Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
02:01:43 (3146302): wrapper (7.7.26015): starting
02:01:43 (3146302): wrapper: running run_atlas (--nthreads 4)
[2026-03-13 02:01:43] Arguments: --nthreads 4
[2026-03-13 02:01:43] Threads: 4
[2026-03-13 02:01:43] Checking for CVMFS
[2026-03-13 02:01:43] No cvmfs_config command found, will try listing directly
[2026-03-13 02:01:43] CVMFS is ok
[2026-03-13 02:01:43] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-13 02:01:43] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-13 02:01:43] Further information can be found at the LHC@home message board.
[2026-03-13 02:01:43] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-13 02:01:43] Checking for apptainer binary...
[2026-03-13 02:01:43] which: no apptainer in ((null))
[2026-03-13 02:01:43] apptainer is not installed, using version from CVMFS
[2026-03-13 02:01:43] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-13 02:01:43] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot32/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut02.grid.cesnet.cz
[2026-03-13 02:01:43] apptainer works
[2026-03-13 02:01:43] Set ATHENA_PROC_NUMBER=4
[2026-03-13 02:01:43] Set ATHENA_CORE_NUMBER=4
[2026-03-13 02:01:43] Starting ATLAS job with PandaID=7049663815
[2026-03-13 02:01:43] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot32/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-13 05:52:30]  *** The last 200 lines of the pilot log: ***
[2026-03-13 05:52:30] 2026-03-13 04:46:33,221 | INFO     | total number of processed events: 400 (read)
[2026-03-13 05:52:30] 2026-03-13 04:46:33,235 | INFO     | using path: /var/lib/boinc/var/slot32/slots/0/PanDA_Pilot-7049663815/memory_monitor_summary.json (trf name=prmon)
[2026-03-13 05:52:30] 2026-03-13 04:46:33,235 | INFO     | extracted standard info from prmon json
[2026-03-13 05:52:30] 2026-03-13 04:46:33,235 | INFO     | extracted standard memory fields from prmon json
[2026-03-13 05:52:30] 2026-03-13 04:46:33,236 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-13 05:52:30] 2026-03-13 04:46:33,236 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-13 05:52:30] 2026-03-13 04:46:33,236 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-13 05:52:30] 2026-03-13 04:46:33,241 | INFO     | fitting pss+swap vs Time
[2026-03-13 05:52:30] 2026-03-13 04:46:33,241 | INFO     | sum of square deviations: 3346927870.0
[2026-03-13 05:52:30] 2026-03-13 04:46:33,243 | INFO     | sum of deviations: 19015102634.000008
[2026-03-13 05:52:30] 2026-03-13 04:46:33,243 | INFO     | mean x: 1773370453.0
[2026-03-13 05:52:30] 2026-03-13 04:46:33,243 | INFO     | mean y: 2304765.0090497737
[2026-03-13 05:52:30] 2026-03-13 04:46:33,243 | INFO     | intersect: -10072851462.333872
[2026-03-13 05:52:30] 2026-03-13 04:46:33,243 | INFO     | chi2: 2.111271923633569
[2026-03-13 05:52:30] 2026-03-13 04:46:33,244 | INFO     | sum of square deviations: 3124858590.0
[2026-03-13 05:52:30] 2026-03-13 04:46:33,245 | INFO     | sum of deviations: 32154626006.500004
[2026-03-13 05:52:30] 2026-03-13 04:46:33,246 | INFO     | mean x: 1773370300.5
[2026-03-13 05:52:30] 2026-03-13 04:46:33,246 | INFO     | mean y: 2313615.060185185
[2026-03-13 05:52:30] 2026-03-13 04:46:33,246 | INFO     | intersect: -18245570934.368988
[2026-03-13 05:52:30] 2026-03-13 04:46:33,246 | INFO     | chi2: 1.3227662456853282
[2026-03-13 05:52:30] 2026-03-13 04:46:33,246 | INFO     | current chi2=1.3227662456853282 (change=37.347424039590145 %)
[2026-03-13 05:52:30] 2026-03-13 04:46:33,247 | INFO     | sum of square deviations: 2912836010.0
[2026-03-13 05:52:30] 2026-03-13 04:46:33,248 | INFO     | sum of deviations: 31307005112.0
[2026-03-13 05:52:30] 2026-03-13 04:46:33,248 | INFO     | mean x: 1773370148.0
[2026-03-13 05:52:30] 2026-03-13 04:46:33,248 | INFO     | mean y: 2313005.289099526
[2026-03-13 05:52:30] 2026-03-13 04:46:33,248 | INFO     | intersect: -19057774173.770527
[2026-03-13 05:52:30] 2026-03-13 04:46:33,249 | INFO     | chi2: 1.3232301699363556
[2026-03-13 05:52:30] 2026-03-13 04:46:33,249 | INFO     | current chi2=1.3232301699363556 (change=-0.035072277701417284 %)
[2026-03-13 05:52:30] 2026-03-13 04:46:33,249 | INFO     | right removable region: 210
[2026-03-13 05:52:30] 2026-03-13 04:46:33,250 | INFO     | sum of square deviations: 3124858590.0
[2026-03-13 05:52:30] 2026-03-13 04:46:33,251 | INFO     | sum of deviations: -9206177523.0
[2026-03-13 05:52:30] 2026-03-13 04:46:33,251 | INFO     | mean x: 1773370605.5
[2026-03-13 05:52:30] 2026-03-13 04:46:33,251 | INFO     | mean y: 2323922.435185185
[2026-03-13 05:52:30] 2026-03-13 04:46:33,251 | INFO     | intersect: 5226869014.026994
[2026-03-13 05:52:30] 2026-03-13 04:46:33,252 | INFO     | chi2: 0.8121446556455288
[2026-03-13 05:52:30] 2026-03-13 04:46:33,252 | INFO     | current chi2=0.8121446556455288 (change=61.53292020064374 %)
[2026-03-13 05:52:30] 2026-03-13 04:46:33,252 | INFO     | sum of square deviations: 2912836010.0
[2026-03-13 05:52:30] 2026-03-13 04:46:33,254 | INFO     | sum of deviations: -8344737292.0
[2026-03-13 05:52:30] 2026-03-13 04:46:33,254 | INFO     | mean x: 1773370758.0
[2026-03-13 05:52:30] 2026-03-13 04:46:33,254 | INFO     | mean y: 2323288.663507109
[2026-03-13 05:52:30] 2026-03-13 04:46:33,254 | INFO     | intersect: 5082703044.345293
[2026-03-13 05:52:30] 2026-03-13 04:46:33,254 | INFO     | chi2: 0.808962109745303
[2026-03-13 05:52:30] 2026-03-13 04:46:33,255 | INFO     | current chi2=0.808962109745303 (change=0.39186933979097477 %)
[2026-03-13 05:52:30] 2026-03-13 04:46:33,255 | INFO     | left removable region: 20
[2026-03-13 05:52:30] 2026-03-13 04:46:33,255 | INFO     | sum of square deviations: 2126802667.5
[2026-03-13 05:52:30] 2026-03-13 04:46:33,256 | INFO     | sum of deviations: 4148786290.0
[2026-03-13 05:52:30] 2026-03-13 04:46:33,256 | INFO     | mean x: 1773370727.5
[2026-03-13 05:52:30] 2026-03-13 04:46:33,256 | INFO     | mean y: 2333225.863157895
[2026-03-13 05:52:30] 2026-03-13 04:46:33,257 | INFO     | intersect: -3457008006.7617188
[2026-03-13 05:52:30] 2026-03-13 04:46:33,257 | INFO     | chi2: 0.0005747929276507353
[2026-03-13 05:52:30] 2026-03-13 04:46:33,257 | INFO     | current memory leak: 1.95 B/s (using 190 data points, chi2=0.00)
[2026-03-13 05:52:30] 2026-03-13 04:46:33,258 | INFO     | could have reported an average CPU frequency of 2579 MHz (11 samples)
[2026-03-13 05:52:30] 2026-03-13 04:46:33,258 | INFO     | ..............................
[2026-03-13 05:52:30] 2026-03-13 04:46:33,258 | INFO     | . Timing measurements:
[2026-03-13 05:52:30] 2026-03-13 04:46:33,258 | INFO     | . get job = 0 s
[2026-03-13 05:52:30] 2026-03-13 04:46:33,258 | INFO     | . initial setup = 6 s
[2026-03-13 05:52:30] 2026-03-13 04:46:33,258 | INFO     | . payload setup = 6 s
[2026-03-13 05:52:30] 2026-03-13 04:46:33,258 | INFO     | . stage-in = 0 s
[2026-03-13 05:52:30] 2026-03-13 04:46:33,258 | INFO     | . payload execution = 13445 s
[2026-03-13 05:52:30] 2026-03-13 04:46:33,259 | INFO     | . stage-out = 1 s
[2026-03-13 05:52:30] 2026-03-13 04:46:33,259 | INFO     | . log creation = 0 s
[2026-03-13 05:52:30] 2026-03-13 04:46:33,259 | INFO     | ..............................
[2026-03-13 05:52:30] 2026-03-13 04:46:33,366 | INFO     | 
[2026-03-13 05:52:30] 2026-03-13 04:46:33,367 | INFO     | job summary report
[2026-03-13 05:52:30] 2026-03-13 04:46:33,367 | INFO     | --------------------------------------------------
[2026-03-13 05:52:30] 2026-03-13 04:46:33,367 | INFO     | PanDA job id: 7049663815
[2026-03-13 05:52:30] 2026-03-13 04:46:33,367 | INFO     | task id: 48967011
[2026-03-13 05:52:30] 2026-03-13 04:46:33,367 | INFO     | errors: (none)
[2026-03-13 05:52:30] 2026-03-13 04:46:33,367 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-13 05:52:30] 2026-03-13 04:46:33,367 | INFO     | pilot state: finished 
[2026-03-13 05:52:30] 2026-03-13 04:46:33,367 | INFO     | transexitcode: 0
[2026-03-13 05:52:30] 2026-03-13 04:46:33,367 | INFO     | exeerrorcode: 0
[2026-03-13 05:52:30] 2026-03-13 04:46:33,368 | INFO     | exeerrordiag: 
[2026-03-13 05:52:30] 2026-03-13 04:46:33,368 | INFO     | exitcode: 0
[2026-03-13 05:52:30] 2026-03-13 04:46:33,368 | INFO     | exitmsg: OK
[2026-03-13 05:52:30] 2026-03-13 04:46:33,368 | INFO     | cpuconsumptiontime: 51895 s
[2026-03-13 05:52:30] 2026-03-13 04:46:33,368 | INFO     | nevents: 400
[2026-03-13 05:52:30] 2026-03-13 04:46:33,368 | INFO     | neventsw: 0
[2026-03-13 05:52:30] 2026-03-13 04:46:33,368 | INFO     | pid: 3154923
[2026-03-13 05:52:30] 2026-03-13 04:46:33,368 | INFO     | pgrp: 3154923
[2026-03-13 05:52:30] 2026-03-13 04:46:33,368 | INFO     | corecount: 4
[2026-03-13 05:52:30] 2026-03-13 04:46:33,368 | INFO     | event service: False
[2026-03-13 05:52:30] 2026-03-13 04:46:33,368 | INFO     | sizes: {0: 2279816, 1: 2280277, 12: 2280277, 13455: 2310414, 13457: 2319434, 13460: 2319490, 13462: 2319812}
[2026-03-13 05:52:30] 2026-03-13 04:46:33,369 | INFO     | --------------------------------------------------
[2026-03-13 05:52:30] 2026-03-13 04:46:33,369 | INFO     | 
[2026-03-13 05:52:30] 2026-03-13 04:46:33,369 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot32/slots/0
[2026-03-13 05:52:30] 2026-03-13 04:46:33,392 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-13 05:52:30] 2026-03-13 04:46:33,393 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-13 05:52:30] 2026-03-13 04:46:33,393 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-13 05:52:30] 2026-03-13 04:46:33,393 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-13 05:52:30] 2026-03-13 04:46:33,393 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-13 05:52:30] 2026-03-13 04:46:33,393 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-13 05:52:30] 2026-03-13 04:46:33,393 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-13 05:52:30] 2026-03-13 04:46:33,393 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-13 05:52:30] 2026-03-13 04:46:33,393 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-13 05:52:30] 2026-03-13 04:46:33,394 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-13 05:52:30] 2026-03-13 04:46:33,394 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-13 05:52:30] 2026-03-13 04:46:33,394 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-13 05:52:30] 2026-03-13 04:46:33,394 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-13 05:52:30] 2026-03-13 04:46:33,394 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-13 05:52:30] 2026-03-13 04:46:33,394 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-13 05:52:30] 2026-03-13 04:46:33,394 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-13 05:52:30] 2026-03-13 04:46:33,394 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-13 05:52:30] 2026-03-13 04:46:33,395 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-13 05:52:30] 2026-03-13 04:46:33,395 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-13 05:52:30] 2026-03-13 04:46:33,395 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-13 05:52:30] 2026-03-13 04:46:33,395 | INFO     | job 7049663815 has completed (purged errors)
[2026-03-13 05:52:30] 2026-03-13 04:46:33,395 | INFO     | overall cleanup function is called
[2026-03-13 05:52:30] 2026-03-13 04:46:34,084 | INFO     | PID=3150080 has CPU usage=15.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-03-13 05:52:30] 2026-03-13 04:46:34,085 | INFO     | .. there are 10 such processes running
[2026-03-13 05:52:30] 2026-03-13 04:46:34,406 | INFO     | --- collectZombieJob: --- 10, [3154923]
[2026-03-13 05:52:30] 2026-03-13 04:46:34,406 | INFO     | zombie collector waiting for pid 3154923
[2026-03-13 05:52:30] 2026-03-13 04:46:34,406 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-13 05:52:30] 2026-03-13 04:46:34,406 | INFO     | collected zombie processes
[2026-03-13 05:52:30] 2026-03-13 04:46:34,406 | INFO     | will attempt to kill all subprocesses of pid=3154923
[2026-03-13 05:52:30] 2026-03-13 04:46:34,808 | INFO     | process IDs to be killed: [3154923] (in reverse order)
[2026-03-13 05:52:30] 2026-03-13 04:46:34,932 | WARNING  | found no corresponding commands to process id(s)
[2026-03-13 05:52:30] 2026-03-13 04:46:34,932 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-13 05:52:30] 2026-03-13 04:46:34,944 | INFO     | did not find any defunct processes belonging to 3154923
[2026-03-13 05:52:30] 2026-03-13 04:46:34,956 | INFO     | did not find any defunct processes belonging to 3154923
[2026-03-13 05:52:30] 2026-03-13 04:46:34,956 | INFO     | ready for new job
[2026-03-13 05:52:30] 2026-03-13 04:46:34,956 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-13 05:52:30] 2026-03-13 04:46:34,959 | INFO     | **************************************
[2026-03-13 05:52:30] 2026-03-13 04:46:34,959 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-13 05:52:30] 2026-03-13 04:46:34,959 | INFO     | **************************************
[2026-03-13 05:52:30] 2026-03-13 04:46:34,959 | INFO     | 
[2026-03-13 05:52:30] 2026-03-13 04:46:34,963 | INFO     | architecture information:
[2026-03-13 05:52:30] 2026-03-13 04:46:34,963 | INFO     | executing command: cat /etc/os-release
[2026-03-13 05:52:30] 2026-03-13 04:46:34,981 | INFO     | cat /etc/os-release:
[2026-03-13 05:52:30] NAME="CentOS Linux"
[2026-03-13 05:52:30] VERSION="7 (Core)"
[2026-03-13 05:52:30] ID="centos"
[2026-03-13 05:52:30] ID_LIKE="rhel fedora"
[2026-03-13 05:52:30] VERSION_ID="7"
[2026-03-13 05:52:30] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-13 05:52:30] ANSI_COLOR="0;31"
[2026-03-13 05:52:30] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-13 05:52:30] HOME_URL="https://www.centos.org/"
[2026-03-13 05:52:30] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-13 05:52:30] 
[2026-03-13 05:52:30] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-13 05:52:30] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-13 05:52:30] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-13 05:52:30] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-13 05:52:30] 
[2026-03-13 05:52:30] 2026-03-13 04:46:34,981 | INFO     | **************************************
[2026-03-13 05:52:30] 2026-03-13 04:46:35,484 | INFO     | executing command: df -mP /var/lib/boinc/var/slot32/slots/0
[2026-03-13 05:52:30] 2026-03-13 04:46:35,503 | INFO     | sufficient remaining disk space (22858956800 B)
[2026-03-13 05:52:30] 2026-03-13 04:46:35,503 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-13 05:52:30] 2026-03-13 04:46:35,503 | INFO     | current server update state: UPDATING_FINAL
[2026-03-13 05:52:30] 2026-03-13 04:46:35,503 | INFO     | update_server=False
[2026-03-13 05:52:30] 2026-03-13 04:46:35,503 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-13 05:52:30] 2026-03-13 04:46:35,722 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-13 05:52:30] 2026-03-13 04:46:35,798 | INFO     | all payload control threads have been joined
[2026-03-13 05:52:30] 2026-03-13 04:46:36,094 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-13 05:52:30] 2026-03-13 04:46:36,094 | INFO     | aborting loop
[2026-03-13 05:52:30] 2026-03-13 04:46:36,166 | INFO     | all job control threads have been joined
[2026-03-13 05:52:30] 2026-03-13 04:46:36,304 | INFO     | all data control threads have been joined
[2026-03-13 05:52:30] 2026-03-13 04:46:36,509 | INFO     | [job] retrieve thread has finished
[2026-03-13 05:52:30] 2026-03-13 04:46:36,509 | INFO     | [job] validate thread has finished
[2026-03-13 05:52:30] 2026-03-13 04:46:36,676 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-13 05:52:30] 2026-03-13 04:46:36,695 | INFO     | [job] create_data_payload thread has finished
[2026-03-13 05:52:30] 2026-03-13 04:46:36,800 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-13 05:52:30] 2026-03-13 04:46:36,802 | INFO     | [payload] control thread has finished
[2026-03-13 05:52:30] 2026-03-13 04:46:36,826 | INFO     | [payload] validate_pre thread has finished
[2026-03-13 05:52:30] 2026-03-13 04:46:36,837 | INFO     | [payload] failed_post thread has finished
[2026-03-13 05:52:30] 2026-03-13 04:46:37,100 | INFO     | [job] job monitor thread has finished
[2026-03-13 05:52:30] 2026-03-13 04:46:37,172 | INFO     | [job] control thread has finished
[2026-03-13 05:52:30] 2026-03-13 04:46:37,184 | INFO     | [data] copytool_in thread has finished
[2026-03-13 05:52:30] 2026-03-13 04:46:37,205 | INFO     | [payload] execute_payloads thread has finished
[2026-03-13 05:52:30] 2026-03-13 04:46:37,309 | INFO     | [data] control thread has finished
[2026-03-13 05:52:30] 2026-03-13 04:46:37,726 | INFO     | [data] copytool_out thread has finished
[2026-03-13 05:52:30] 2026-03-13 04:46:37,987 | INFO     | [payload] validate_post thread has finished
[2026-03-13 05:52:30] 2026-03-13 04:46:38,376 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-13 05:52:30] 2026-03-13 04:46:39,381 | INFO     | [job] queue monitor thread has finished
[2026-03-13 05:52:30] 2026-03-13 04:46:40,808 | INFO     | [data] queue_monitor thread has finished
[2026-03-13 05:52:30] 2026-03-13 04:46:52,793 [wrapper] supervise_pilot (15 min periods counter: 16)
[2026-03-13 05:52:30] 2026-03-13 04:47:06,678 | INFO     | PID=3150080 has CPU usage=3.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-13 05:52:30] 2026-03-13 04:47:06,678 | INFO     | .. there are 10 such processes running
[2026-03-13 05:52:30] 2026-03-13 04:47:06,678 | INFO     | found 0 job(s) in 20 queues
[2026-03-13 05:52:30] 2026-03-13 04:47:06,678 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-13 05:52:30] 2026-03-13 04:47:06,678 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-13 05:52:30] 2026-03-13 04:47:21,099 | INFO     | [monitor] cgroup control has ended
[2026-03-13 05:52:30] 2026-03-13 04:47:22,834 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22903336154944)>', '<ExcThread(monitor, started 22903094777600)>']
[2026-03-13 05:52:30] 2026-03-13 04:47:23,741 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-13 05:52:30] 2026-03-13 04:47:23,742 | INFO     | [monitor] control thread has ended
[2026-03-13 05:52:30] 2026-03-13 04:47:27,839 | INFO     | all workflow threads have been joined
[2026-03-13 05:52:30] 2026-03-13 04:47:27,839 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-13 05:52:30] 2026-03-13 04:47:27,839 | INFO     | traces error code: 0
[2026-03-13 05:52:30] 2026-03-13 04:47:27,840 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-13 05:52:30] 2026-03-13 04:47:28,027 [wrapper] ==== pilot stdout END ====
[2026-03-13 05:52:30] 2026-03-13 04:47:28,030 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-13 05:52:30] 2026-03-13 04:47:28,033 [wrapper] pilotpid: 3150080
[2026-03-13 05:52:30] 2026-03-13 04:47:28,037 [wrapper] Pilot exit status: 0
[2026-03-13 05:52:30] 2026-03-13 04:47:28,047 [wrapper] pandaids: 7049663815
[2026-03-13 05:52:30] 2026-03-13 04:47:28,135 [wrapper] cleanup supervisor_pilot 3393868 3150081
[2026-03-13 05:52:30] 2026-03-13 04:47:28,138 [wrapper] Test setup, not cleaning
[2026-03-13 05:52:30] 2026-03-13 04:47:28,141 [wrapper] apfmon messages muted
[2026-03-13 05:52:30] 2026-03-13 04:47:28,144 [wrapper] ==== wrapper stdout END ====
[2026-03-13 05:52:30] 2026-03-13 04:47:28,147 [wrapper] ==== wrapper stderr END ====
[2026-03-13 05:52:30]  *** Error codes and diagnostics ***
[2026-03-13 05:52:30]     "exeErrorCode": 0,
[2026-03-13 05:52:30]     "exeErrorDiag": "",
[2026-03-13 05:52:30]     "pilotErrorCode": 0,
[2026-03-13 05:52:30]     "pilotErrorDiag": "",
[2026-03-13 05:52:30]  *** Listing of results directory ***
[2026-03-13 05:52:30] total 424744
[2026-03-13 05:52:30] -rw-r--r--. 1 boinc boinc    585013 Mar 11 10:02 pilot3.tar.gz
[2026-03-13 05:52:30] -rw-r--r--. 1 boinc boinc      5111 Mar 11 10:06 queuedata.json
[2026-03-13 05:52:30] -rwx------. 1 boinc boinc     36322 Mar 11 10:06 runpilot2-wrapper.sh
[2026-03-13 05:52:30] -rw-r--r--. 1 boinc boinc       100 Mar 13 02:01 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-13 05:52:30] -rwxr-xr-x. 1 boinc boinc      7986 Mar 13 02:01 run_atlas
[2026-03-13 05:52:30] -rw-r--r--. 1 boinc boinc       105 Mar 13 02:01 job.xml
[2026-03-13 05:52:30] -rw-r--r--. 2 boinc boinc 218488442 Mar 13 02:01 EVNT.48967008._000395.pool.root.1
[2026-03-13 05:52:30] -rw-r--r--. 1 boinc boinc      6563 Mar 13 02:01 init_data.xml
[2026-03-13 05:52:30] -rw-r--r--. 2 boinc boinc     15845 Mar 13 02:01 start_atlas.sh
[2026-03-13 05:52:30] drwxrwx--x. 2 boinc boinc      4096 Mar 13 02:01 shared
[2026-03-13 05:52:30] -rw-r--r--. 2 boinc boinc    597521 Mar 13 02:01 input.tar.gz
[2026-03-13 05:52:30] -rw-r--r--. 1 boinc boinc         0 Mar 13 02:01 boinc_lockfile
[2026-03-13 05:52:30] -rw-r--r--. 1 boinc boinc      2561 Mar 13 02:01 pandaJob.out
[2026-03-13 05:52:30] -rw-------. 1 boinc boinc   1006522 Mar 13 02:01 agis_schedconf.cvmfs.json
[2026-03-13 05:52:30] -rw-------. 1 boinc boinc       451 Mar 13 02:01 workernode_map.json
[2026-03-13 05:52:30] drwx------. 5 boinc boinc      4096 Mar 13 02:01 pilot3
[2026-03-13 05:52:30] -rw-------. 1 boinc boinc 207959816 Mar 13 05:45 HITS.48967011._009992.pool.root.1
[2026-03-13 05:52:30] -rw-r--r--. 1 boinc boinc       528 Mar 13 05:45 boinc_task_state.xml
[2026-03-13 05:52:30] -rw-------. 1 boinc boinc        95 Mar 13 05:46 pilot_heartbeat.json
[2026-03-13 05:52:30] -rw-------. 1 boinc boinc      1033 Mar 13 05:46 memory_monitor_summary.json
[2026-03-13 05:52:30] -rw-------. 1 boinc boinc   1511578 Mar 13 05:46 agis_ddmendpoints.agis.ALL.json
[2026-03-13 05:52:30] -rw-------. 1 boinc boinc    384665 Mar 13 05:46 log.48967011._009992.job.log.tgz.1
[2026-03-13 05:52:30] -rw-------. 1 boinc boinc      6413 Mar 13 05:46 heartbeat.json
[2026-03-13 05:52:30] -rw-------. 1 boinc boinc      4829 Mar 13 05:47 pilotlog.txt
[2026-03-13 05:52:30] -rw-------. 1 boinc boinc   1895959 Mar 13 05:47 log.48967011._009992.job.log.1
[2026-03-13 05:52:30] -rw-------. 1 boinc boinc       357 Mar 13 05:47 output.list
[2026-03-13 05:52:30] -rw-r--r--. 1 boinc boinc       620 Mar 13 05:47 runtime_log
[2026-03-13 05:52:30] -rw-------. 1 boinc boinc   2293760 Mar 13 05:47 result.tar.gz
[2026-03-13 05:52:30] -rw-r--r--. 1 boinc boinc      9205 Mar 13 05:47 runtime_log.err
[2026-03-13 05:52:30] -rw-------. 1 boinc boinc       665 Mar 13 05:47 JifNDmihUK9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmb6iLDmugNkim.diag
[2026-03-13 05:52:30] -rw-r--r--. 1 boinc boinc        27 Mar 13 05:52 wrapper_checkpoint.txt
[2026-03-13 05:52:30] -rw-r--r--. 1 boinc boinc      8192 Mar 13 05:52 boinc_mmap_file
[2026-03-13 05:52:30] -rw-r--r--. 1 boinc boinc     20920 Mar 13 05:52 stderr.txt
[2026-03-13 05:52:30] HITS file was successfully produced:
[2026-03-13 05:52:30] -rw-------. 1 boinc boinc 207959816 Mar 13 05:45 shared/HITS.pool.root.1
[2026-03-13 05:52:30]  *** Contents of shared directory: ***
[2026-03-13 05:52:30] total 419304
[2026-03-13 05:52:30] -rw-r--r--. 2 boinc boinc 218488442 Mar 13 02:01 ATLAS.root_0
[2026-03-13 05:52:30] -rw-r--r--. 2 boinc boinc     15845 Mar 13 02:01 start_atlas.sh
[2026-03-13 05:52:30] -rw-r--r--. 2 boinc boinc    597521 Mar 13 02:01 input.tar.gz
[2026-03-13 05:52:30] -rw-------. 1 boinc boinc 207959816 Mar 13 05:45 HITS.pool.root.1
[2026-03-13 05:52:30] -rw-------. 1 boinc boinc   2293760 Mar 13 05:47 result.tar.gz
05:52:32 (3146302): run_atlas exited; CPU time 52505.849074
05:52:32 (3146302): called boinc_finish(0)

</stderr_txt>
]]>

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