Stderr output

<core_client_version>8.3.0</core_client_version>
<![CDATA[
<stderr_txt>
07:16:03 (809497): wrapper (7.7.26015): starting
07:16:03 (809497): wrapper: running run_atlas (--nthreads 4)
[2026-03-11 07:16:03] Arguments: --nthreads 4
[2026-03-11 07:16:03] Threads: 4
[2026-03-11 07:16:03] Checking for CVMFS
[2026-03-11 07:16:04] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-11 07:16:04] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-11 07:16:04] Running cvmfs_config stat atlas.cern.ch
[2026-03-11 07:16:04] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-11 07:16:04] 2.13.3.0 1760492 7281 50472 157153 2 50 3559334 4096000 1832 130560 0 5833853 99.991 258430 833 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
[2026-03-11 07:16:04] CVMFS is ok
[2026-03-11 07:16:04] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-11 07:16:04] Small home clusters do not require a local http proxy but it is suggested if
[2026-03-11 07:16:04] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2026-03-11 07:16:04] Further information can be found at the LHC@home message board.
[2026-03-11 07:16:04] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-11 07:16:04] Checking for apptainer binary...
[2026-03-11 07:16:04] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-11 07:16:04] Running /usr/bin/apptainer --version
[2026-03-11 07:16:04] apptainer version 1.4.5
[2026-03-11 07:16:04] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-11 07:16:04] OptiPlex7070-Ubuntu
[2026-03-11 07:16:04] apptainer works
[2026-03-11 07:16:04] Set ATHENA_PROC_NUMBER=4
[2026-03-11 07:16:04] Set ATHENA_CORE_NUMBER=4
[2026-03-11 07:16:04] Starting ATLAS job with PandaID=7043105437
[2026-03-11 07:16:04] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/whitlerd/Desktop/BOINC/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-11 09:24:34]  *** The last 200 lines of the pilot log: ***
[2026-03-11 09:24:34] 2026-03-11 13:23:41,523 | INFO     | added worker_node to metadata from /home/whitlerd/Desktop/BOINC/slots/3/workernode_map.json
[2026-03-11 09:24:34] 2026-03-11 13:23:41,523 | INFO     | this job has now completed (state=finished)
[2026-03-11 09:24:34] 2026-03-11 13:23:41,523 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-11 09:24:34] 2026-03-11 13:23:41,523 | INFO     | log transfer has been attempted: DONE
[2026-03-11 09:24:34] 2026-03-11 13:23:41,524 | INFO     | job 7043105437 has finished - writing final server update
[2026-03-11 09:24:34] 2026-03-11 13:23:41,524 | INFO     | total number of processed events: 400 (read)
[2026-03-11 09:24:34] 2026-03-11 13:23:41,526 | INFO     | using path: /home/whitlerd/Desktop/BOINC/slots/3/PanDA_Pilot-7043105437/memory_monitor_summary.json (trf name=prmon)
[2026-03-11 09:24:34] 2026-03-11 13:23:41,527 | INFO     | extracted standard info from prmon json
[2026-03-11 09:24:34] 2026-03-11 13:23:41,527 | INFO     | extracted standard memory fields from prmon json
[2026-03-11 09:24:34] 2026-03-11 13:23:41,527 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-11 09:24:34] 2026-03-11 13:23:41,527 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-11 09:24:34] 2026-03-11 13:23:41,527 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-11 09:24:34] 2026-03-11 13:23:41,529 | INFO     | fitting pss+swap vs Time
[2026-03-11 09:24:34] 2026-03-11 13:23:41,529 | INFO     | sum of square deviations: 605592750.0
[2026-03-11 09:24:34] 2026-03-11 13:23:41,530 | INFO     | sum of deviations: -27068559740.999996
[2026-03-11 09:24:34] 2026-03-11 13:23:41,530 | INFO     | mean x: 1773231576.0
[2026-03-11 09:24:34] 2026-03-11 13:23:41,530 | INFO     | mean y: 2544349.6
[2026-03-11 09:24:34] 2026-03-11 13:23:41,530 | INFO     | intersect: 79261790517.23259
[2026-03-11 09:24:34] 2026-03-11 13:23:41,530 | INFO     | chi2: 1.570832621576075
[2026-03-11 09:24:34] 2026-03-11 13:23:41,531 | INFO     | sum of square deviations: 535786790.0
[2026-03-11 09:24:34] 2026-03-11 13:23:41,531 | INFO     | sum of deviations: -22908598861.0
[2026-03-11 09:24:34] 2026-03-11 13:23:41,531 | INFO     | mean x: 1773231423.5
[2026-03-11 09:24:34] 2026-03-11 13:23:41,531 | INFO     | mean y: 2553444.5
[2026-03-11 09:24:34] 2026-03-11 13:23:41,531 | INFO     | intersect: 75820487232.45604
[2026-03-11 09:24:34] 2026-03-11 13:23:41,532 | INFO     | chi2: 1.5726132201537317
[2026-03-11 09:24:34] 2026-03-11 13:23:41,532 | INFO     | current chi2=1.5726132201537317 (change=-0.11335380696831504 %)
[2026-03-11 09:24:34] 2026-03-11 13:23:41,532 | INFO     | right removable region: 119
[2026-03-11 09:24:34] 2026-03-11 13:23:41,532 | INFO     | sum of square deviations: 535786790.0
[2026-03-11 09:24:34] 2026-03-11 13:23:41,532 | INFO     | sum of deviations: -41613571364.49999
[2026-03-11 09:24:34] 2026-03-11 13:23:41,533 | INFO     | mean x: 1773231728.5
[2026-03-11 09:24:34] 2026-03-11 13:23:41,533 | INFO     | mean y: 2575281.7416666667
[2026-03-11 09:24:34] 2026-03-11 13:23:41,533 | INFO     | intersect: 137726211729.98337
[2026-03-11 09:24:34] 2026-03-11 13:23:41,533 | INFO     | chi2: 0.20922579469188576
[2026-03-11 09:24:34] 2026-03-11 13:23:41,533 | INFO     | current chi2=0.20922579469188576 (change=86.68057997917296 %)
[2026-03-11 09:24:34] 2026-03-11 13:23:41,533 | INFO     | sum of square deviations: 471562330.0
[2026-03-11 09:24:34] 2026-03-11 13:23:41,534 | INFO     | sum of deviations: -39256320518.0
[2026-03-11 09:24:34] 2026-03-11 13:23:41,534 | INFO     | mean x: 1773231881.0
[2026-03-11 09:24:34] 2026-03-11 13:23:41,534 | INFO     | mean y: 2569671.539130435
[2026-03-11 09:24:34] 2026-03-11 13:23:41,534 | INFO     | intersect: 147619447960.50687
[2026-03-11 09:24:34] 2026-03-11 13:23:41,534 | INFO     | chi2: 0.19115911118288564
[2026-03-11 09:24:34] 2026-03-11 13:23:41,534 | INFO     | current chi2=0.19115911118288564 (change=8.635017271940985 %)
[2026-03-11 09:24:34] 2026-03-11 13:23:41,534 | INFO     | left removable region: 20
[2026-03-11 09:24:34] 2026-03-11 13:23:41,534 | INFO     | sum of square deviations: 300842850.0
[2026-03-11 09:24:34] 2026-03-11 13:23:41,535 | INFO     | sum of deviations: -29457419598.000004
[2026-03-11 09:24:34] 2026-03-11 13:23:41,535 | INFO     | mean x: 1773232003.0
[2026-03-11 09:24:34] 2026-03-11 13:23:41,535 | INFO     | mean y: 2568897.474747475
[2026-03-11 09:24:34] 2026-03-11 13:23:41,535 | INFO     | intersect: 173630890650.75226
[2026-03-11 09:24:34] 2026-03-11 13:23:41,535 | INFO     | chi2: 0.15903054312214282
[2026-03-11 09:24:34] 2026-03-11 13:23:41,535 | INFO     | current memory leak: -97.92 B/s (using 99 data points, chi2=0.16)
[2026-03-11 09:24:34] 2026-03-11 13:23:41,536 | INFO     | could have reported an average CPU frequency of 3414 MHz (8 samples)
[2026-03-11 09:24:34] 2026-03-11 13:23:41,536 | INFO     | ..............................
[2026-03-11 09:24:34] 2026-03-11 13:23:41,536 | INFO     | . Timing measurements:
[2026-03-11 09:24:34] 2026-03-11 13:23:41,536 | INFO     | . get job = 0 s
[2026-03-11 09:24:34] 2026-03-11 13:23:41,536 | INFO     | . initial setup = 5 s
[2026-03-11 09:24:34] 2026-03-11 13:23:41,536 | INFO     | . payload setup = 3 s
[2026-03-11 09:24:34] 2026-03-11 13:23:41,536 | INFO     | . stage-in = 0 s
[2026-03-11 09:24:34] 2026-03-11 13:23:41,536 | INFO     | . payload execution = 7625 s
[2026-03-11 09:24:34] 2026-03-11 13:23:41,536 | INFO     | . stage-out = 0 s
[2026-03-11 09:24:34] 2026-03-11 13:23:41,536 | INFO     | . log creation = 0 s
[2026-03-11 09:24:34] 2026-03-11 13:23:41,537 | INFO     | ..............................
[2026-03-11 09:24:34] 2026-03-11 13:23:42,067 | INFO     | 
[2026-03-11 09:24:34] 2026-03-11 13:23:42,067 | INFO     | job summary report
[2026-03-11 09:24:34] 2026-03-11 13:23:42,067 | INFO     | --------------------------------------------------
[2026-03-11 09:24:34] 2026-03-11 13:23:42,067 | INFO     | PanDA job id: 7043105437
[2026-03-11 09:24:34] 2026-03-11 13:23:42,067 | INFO     | task id: 48955015
[2026-03-11 09:24:34] 2026-03-11 13:23:42,067 | INFO     | errors: (none)
[2026-03-11 09:24:34] 2026-03-11 13:23:42,067 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-11 09:24:34] 2026-03-11 13:23:42,067 | INFO     | pilot state: finished 
[2026-03-11 09:24:34] 2026-03-11 13:23:42,067 | INFO     | transexitcode: 0
[2026-03-11 09:24:34] 2026-03-11 13:23:42,067 | INFO     | exeerrorcode: 0
[2026-03-11 09:24:34] 2026-03-11 13:23:42,068 | INFO     | exeerrordiag: 
[2026-03-11 09:24:34] 2026-03-11 13:23:42,068 | INFO     | exitcode: 0
[2026-03-11 09:24:34] 2026-03-11 13:23:42,068 | INFO     | exitmsg: OK
[2026-03-11 09:24:34] 2026-03-11 13:23:42,068 | INFO     | cpuconsumptiontime: 29637 s
[2026-03-11 09:24:34] 2026-03-11 13:23:42,068 | INFO     | nevents: 400
[2026-03-11 09:24:34] 2026-03-11 13:23:42,068 | INFO     | neventsw: 0
[2026-03-11 09:24:34] 2026-03-11 13:23:42,068 | INFO     | pid: 818193
[2026-03-11 09:24:34] 2026-03-11 13:23:42,068 | INFO     | pgrp: 818193
[2026-03-11 09:24:34] 2026-03-11 13:23:42,068 | INFO     | corecount: 4
[2026-03-11 09:24:34] 2026-03-11 13:23:42,068 | INFO     | event service: False
[2026-03-11 09:24:34] 2026-03-11 13:23:42,068 | INFO     | sizes: {0: 2279936, 1: 2280226, 11: 2280226, 7632: 2307969, 7633: 2317051, 7634: 2317189}
[2026-03-11 09:24:34] 2026-03-11 13:23:42,068 | INFO     | --------------------------------------------------
[2026-03-11 09:24:34] 2026-03-11 13:23:42,068 | INFO     | 
[2026-03-11 09:24:34] 2026-03-11 13:23:42,068 | INFO     | executing command: ls -lF /home/whitlerd/Desktop/BOINC/slots/3
[2026-03-11 09:24:34] 2026-03-11 13:23:42,081 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-11 09:24:34] 2026-03-11 13:23:42,081 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-11 09:24:34] 2026-03-11 13:23:42,081 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-11 09:24:34] 2026-03-11 13:23:42,081 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-11 09:24:34] 2026-03-11 13:23:42,081 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-11 09:24:34] 2026-03-11 13:23:42,082 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-11 09:24:34] 2026-03-11 13:23:42,082 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-11 09:24:34] 2026-03-11 13:23:42,082 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-11 09:24:34] 2026-03-11 13:23:42,082 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-11 09:24:34] 2026-03-11 13:23:42,082 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-11 09:24:34] 2026-03-11 13:23:42,082 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-11 09:24:34] 2026-03-11 13:23:42,082 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-11 09:24:34] 2026-03-11 13:23:42,082 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-11 09:24:34] 2026-03-11 13:23:42,082 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-11 09:24:34] 2026-03-11 13:23:42,082 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-11 09:24:34] 2026-03-11 13:23:42,082 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-11 09:24:34] 2026-03-11 13:23:42,082 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-11 09:24:34] 2026-03-11 13:23:42,083 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-11 09:24:34] 2026-03-11 13:23:42,083 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-11 09:24:34] 2026-03-11 13:23:42,083 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-11 09:24:34] 2026-03-11 13:23:42,083 | INFO     | job 7043105437 has completed (purged errors)
[2026-03-11 09:24:34] 2026-03-11 13:23:42,083 | INFO     | overall cleanup function is called
[2026-03-11 09:24:34] 2026-03-11 13:23:43,090 | INFO     | --- collectZombieJob: --- 10, [818193]
[2026-03-11 09:24:34] 2026-03-11 13:23:43,090 | INFO     | zombie collector waiting for pid 818193
[2026-03-11 09:24:34] 2026-03-11 13:23:43,090 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-11 09:24:34] 2026-03-11 13:23:43,090 | INFO     | collected zombie processes
[2026-03-11 09:24:34] 2026-03-11 13:23:43,090 | INFO     | will attempt to kill all subprocesses of pid=818193
[2026-03-11 09:24:34] 2026-03-11 13:23:43,201 | INFO     | process IDs to be killed: [818193] (in reverse order)
[2026-03-11 09:24:34] 2026-03-11 13:23:43,242 | WARNING  | found no corresponding commands to process id(s)
[2026-03-11 09:24:34] 2026-03-11 13:23:43,242 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-11 09:24:34] 2026-03-11 13:23:43,246 | INFO     | did not find any defunct processes belonging to 818193
[2026-03-11 09:24:34] 2026-03-11 13:23:43,248 | INFO     | did not find any defunct processes belonging to 818193
[2026-03-11 09:24:34] 2026-03-11 13:23:43,249 | INFO     | ready for new job
[2026-03-11 09:24:34] 2026-03-11 13:23:43,249 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-11 09:24:34] 2026-03-11 13:23:43,249 | INFO     | **************************************
[2026-03-11 09:24:34] 2026-03-11 13:23:43,250 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-11 09:24:34] 2026-03-11 13:23:43,250 | INFO     | **************************************
[2026-03-11 09:24:34] 2026-03-11 13:23:43,250 | INFO     | 
[2026-03-11 09:24:34] 2026-03-11 13:23:43,250 | INFO     | architecture information:
[2026-03-11 09:24:34] 2026-03-11 13:23:43,250 | INFO     | executing command: cat /etc/os-release
[2026-03-11 09:24:34] 2026-03-11 13:23:43,263 | INFO     | cat /etc/os-release:
[2026-03-11 09:24:34] NAME="CentOS Linux"
[2026-03-11 09:24:34] VERSION="7 (Core)"
[2026-03-11 09:24:34] ID="centos"
[2026-03-11 09:24:34] ID_LIKE="rhel fedora"
[2026-03-11 09:24:34] VERSION_ID="7"
[2026-03-11 09:24:34] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-11 09:24:34] ANSI_COLOR="0;31"
[2026-03-11 09:24:34] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-11 09:24:34] HOME_URL="https://www.centos.org/"
[2026-03-11 09:24:34] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-11 09:24:34] 
[2026-03-11 09:24:34] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-11 09:24:34] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-11 09:24:34] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-11 09:24:34] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-11 09:24:34] 
[2026-03-11 09:24:34] 2026-03-11 13:23:43,263 | INFO     | **************************************
[2026-03-11 09:24:34] 2026-03-11 13:23:43,481 | WARNING  | process 818193 can no longer be monitored (due to stat problems) - aborting
[2026-03-11 09:24:34] 2026-03-11 13:23:43,533 | INFO     | using path: /home/whitlerd/Desktop/BOINC/slots/3/memory_monitor_summary.json (trf name=prmon)
[2026-03-11 09:24:34] 2026-03-11 13:23:43,617 | INFO     | number of running child processes to parent process 818193: 1
[2026-03-11 09:24:34] 2026-03-11 13:23:43,617 | INFO     | maximum number of monitored processes: 6
[2026-03-11 09:24:34] 2026-03-11 13:23:43,617 | INFO     | aborting job monitoring since job object (job id=7043105437) has expired
[2026-03-11 09:24:34] 2026-03-11 13:23:43,766 | INFO     | executing command: df -mP /home/whitlerd/Desktop/BOINC/slots/3
[2026-03-11 09:24:34] 2026-03-11 13:23:43,774 | INFO     | sufficient remaining disk space (411400404992 B)
[2026-03-11 09:24:34] 2026-03-11 13:23:43,774 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-11 09:24:34] 2026-03-11 13:23:43,774 | INFO     | current server update state: UPDATING_FINAL
[2026-03-11 09:24:34] 2026-03-11 13:23:43,774 | INFO     | update_server=False
[2026-03-11 09:24:34] 2026-03-11 13:23:43,774 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-11 09:24:34] 2026-03-11 13:23:43,774 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-11 09:24:34] 2026-03-11 13:23:43,774 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-11 09:24:34] 2026-03-11 13:23:43,775 | INFO     | will abort loop
[2026-03-11 09:24:34] 2026-03-11 13:23:43,881 | INFO     | all job control threads have been joined
[2026-03-11 09:24:34] 2026-03-11 13:23:44,775 | INFO     | all payload control threads have been joined
[2026-03-11 09:24:34] 2026-03-11 13:23:44,779 | INFO     | [job] retrieve thread has finished
[2026-03-11 09:24:34] 2026-03-11 13:23:44,780 | INFO     | [job] job monitor thread has finished
[2026-03-11 09:24:34] 2026-03-11 13:23:44,877 | INFO     | all data control threads have been joined
[2026-03-11 09:24:34] 2026-03-11 13:23:44,886 | INFO     | [job] control thread has finished
[2026-03-11 09:24:34] 2026-03-11 13:23:44,896 | INFO     | [job] create_data_payload thread has finished
[2026-03-11 09:24:34] 2026-03-11 13:23:45,037 | INFO     | [payload] validate_pre thread has finished
[2026-03-11 09:24:34] 2026-03-11 13:23:45,319 | INFO     | [data] copytool_in thread has finished
[2026-03-11 09:24:34] 2026-03-11 13:23:45,422 | INFO     | [payload] execute_payloads thread has finished
[2026-03-11 09:24:34] 2026-03-11 13:23:45,633 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-11 09:24:34] 2026-03-11 13:23:45,780 | INFO     | [data] copytool_out thread has finished
[2026-03-11 09:24:34] 2026-03-11 13:23:45,780 | INFO     | [payload] control thread has finished
[2026-03-11 09:24:34] 2026-03-11 13:23:45,797 | INFO     | [payload] validate_post thread has finished
[2026-03-11 09:24:34] 2026-03-11 13:23:45,817 | INFO     | [payload] failed_post thread has finished
[2026-03-11 09:24:34] 2026-03-11 13:23:45,882 | INFO     | [data] control thread has finished
[2026-03-11 09:24:34] 2026-03-11 13:23:46,184 | INFO     | [job] validate thread has finished
[2026-03-11 09:24:34] 2026-03-11 13:23:46,614 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-11 09:24:34] 2026-03-11 13:23:46,718 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-11 09:24:34] 2026-03-11 13:23:47,619 | INFO     | [job] queue monitor thread has finished
[2026-03-11 09:24:34] 2026-03-11 13:23:50,723 | INFO     | [data] queue_monitor thread has finished
[2026-03-11 09:24:34] 2026-03-11 13:24:14,466 | INFO     | PID=813635 has CPU usage=2.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-11 09:24:34] 2026-03-11 13:24:14,466 | INFO     | .. there are 3 such processes running
[2026-03-11 09:24:34] 2026-03-11 13:24:14,466 | INFO     | found 0 job(s) in 20 queues
[2026-03-11 09:24:34] 2026-03-11 13:24:14,467 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-11 09:24:34] 2026-03-11 13:24:14,467 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-11 09:24:34] 2026-03-11 13:24:28,916 | INFO     | [monitor] cgroup control has ended
[2026-03-11 09:24:34] 2026-03-11 13:24:29,073 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 125369112446784)>', '<ExcThread(monitor, started 125368830015232)>']
[2026-03-11 09:24:34] 2026-03-11 13:24:29,537 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-11 09:24:34] 2026-03-11 13:24:29,537 | INFO     | [monitor] control thread has ended
[2026-03-11 09:24:34] 2026-03-11 13:24:34,098 | INFO     | all workflow threads have been joined
[2026-03-11 09:24:34] 2026-03-11 13:24:34,098 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-11 09:24:34] 2026-03-11 13:24:34,098 | INFO     | traces error code: 0
[2026-03-11 09:24:34] 2026-03-11 13:24:34,098 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-11 09:24:34] 2026-03-11 13:24:34,170 [wrapper] ==== pilot stdout END ====
[2026-03-11 09:24:34] 2026-03-11 13:24:34,172 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-11 09:24:34] 2026-03-11 13:24:34,175 [wrapper] pilotpid: 813635
[2026-03-11 09:24:34] 2026-03-11 13:24:34,176 [wrapper] Pilot exit status: 0
[2026-03-11 09:24:34] 2026-03-11 13:24:34,181 [wrapper] pandaids: 7043105437
[2026-03-11 09:24:34] 2026-03-11 13:24:34,205 [wrapper] cleanup supervisor_pilot  858658 813636
[2026-03-11 09:24:34] 2026-03-11 13:24:34,207 [wrapper] Test setup, not cleaning
[2026-03-11 09:24:34] 2026-03-11 13:24:34,208 [wrapper] apfmon messages muted
[2026-03-11 09:24:34] 2026-03-11 13:24:34,210 [wrapper] ==== wrapper stdout END ====
[2026-03-11 09:24:34] 2026-03-11 13:24:34,211 [wrapper] ==== wrapper stderr END ====
[2026-03-11 09:24:34]  *** Error codes and diagnostics ***
[2026-03-11 09:24:34]     "exeErrorCode": 0,
[2026-03-11 09:24:34]     "exeErrorDiag": "",
[2026-03-11 09:24:34]     "pilotErrorCode": 0,
[2026-03-11 09:24:34]     "pilotErrorDiag": "",
[2026-03-11 09:24:34]  *** Listing of results directory ***
[2026-03-11 09:24:34] total 623716
[2026-03-11 09:24:34] -rw-r--r-- 1 whitlerd whitlerd    585013 Mar 11 02:55 pilot3.tar.gz
[2026-03-11 09:24:34] -rwx------ 1 whitlerd whitlerd     36322 Mar 11 02:58 runpilot2-wrapper.sh
[2026-03-11 09:24:34] -rw-r--r-- 1 whitlerd whitlerd      5111 Mar 11 02:59 queuedata.json
[2026-03-11 09:24:34] -rw-rw-r-- 1 whitlerd whitlerd       100 Mar 11 07:16 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-11 09:24:34] -rwxr-xr-x 1 whitlerd whitlerd      7986 Mar 11 07:16 run_atlas
[2026-03-11 09:24:34] -rw-rw-r-- 1 whitlerd whitlerd       105 Mar 11 07:16 job.xml
[2026-03-11 09:24:34] -rw-r--r-- 2 whitlerd whitlerd 443099010 Mar 11 07:16 EVNT.46701403._002133.pool.root.1
[2026-03-11 09:24:34] -rw-r--r-- 2 whitlerd whitlerd     15845 Mar 11 07:16 start_atlas.sh
[2026-03-11 09:24:34] drwxrwx--x 2 whitlerd whitlerd      4096 Mar 11 07:16 shared
[2026-03-11 09:24:34] -rw-r--r-- 2 whitlerd whitlerd    597539 Mar 11 07:16 input.tar.gz
[2026-03-11 09:24:34] -rw-rw-r-- 1 whitlerd whitlerd      6467 Mar 11 07:16 init_data.xml
[2026-03-11 09:24:34] -rw-rw-r-- 1 whitlerd whitlerd         0 Mar 11 07:16 boinc_setup_complete
[2026-03-11 09:24:34] -rw-rw-r-- 1 whitlerd whitlerd         0 Mar 11 07:16 boinc_lockfile
[2026-03-11 09:24:34] -rw-rw-r-- 1 whitlerd whitlerd      2570 Mar 11 07:16 pandaJob.out
[2026-03-11 09:24:34] -rw------- 1 whitlerd whitlerd   1007002 Mar 11 07:16 agis_schedconf.cvmfs.json
[2026-03-11 09:24:34] -rw------- 1 whitlerd whitlerd   1511578 Mar 11 07:16 agis_ddmendpoints.agis.ALL.json
[2026-03-11 09:24:34] -rw------- 1 whitlerd whitlerd       433 Mar 11 07:16 workernode_map.json
[2026-03-11 09:24:34] drwx------ 5 whitlerd whitlerd      4096 Mar 11 07:16 pilot3
[2026-03-11 09:24:34] -rw------- 1 whitlerd whitlerd 188691928 Mar 11 09:23 HITS.48955015._012952.pool.root.1
[2026-03-11 09:24:34] -rw------- 1 whitlerd whitlerd        95 Mar 11 09:23 pilot_heartbeat.json
[2026-03-11 09:24:34] -rw-rw-r-- 1 whitlerd whitlerd       530 Mar 11 09:23 boinc_task_state.xml
[2026-03-11 09:24:34] -rw------- 1 whitlerd whitlerd      1028 Mar 11 09:23 memory_monitor_summary.json
[2026-03-11 09:24:34] -rw------- 1 whitlerd whitlerd    350858 Mar 11 09:23 log.48955015._012952.job.log.tgz.1
[2026-03-11 09:24:34] -rw------- 1 whitlerd whitlerd      6364 Mar 11 09:23 heartbeat.json
[2026-03-11 09:24:34] -rw-rw-r-- 1 whitlerd whitlerd      8192 Mar 11 09:24 boinc_mmap_file
[2026-03-11 09:24:34] -rw-rw-r-- 1 whitlerd whitlerd        27 Mar 11 09:24 wrapper_checkpoint.txt
[2026-03-11 09:24:34] -rw------- 1 whitlerd whitlerd      5366 Mar 11 09:24 pilotlog.txt
[2026-03-11 09:24:34] -rw------- 1 whitlerd whitlerd   1129317 Mar 11 09:24 log.48955015._012952.job.log.1
[2026-03-11 09:24:34] -rw------- 1 whitlerd whitlerd       357 Mar 11 09:24 output.list
[2026-03-11 09:24:34] -rw-rw-r-- 1 whitlerd whitlerd       620 Mar 11 09:24 runtime_log
[2026-03-11 09:24:34] -rw------- 1 whitlerd whitlerd   1495040 Mar 11 09:24 result.tar.gz
[2026-03-11 09:24:34] -rw------- 1 whitlerd whitlerd       658 Mar 11 09:24 XQ4MDm2hSK9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmSriLDmJqxJMn.diag
[2026-03-11 09:24:34] -rw-rw-r-- 1 whitlerd whitlerd      9054 Mar 11 09:24 runtime_log.err
[2026-03-11 09:24:34] -rw-rw-r-- 1 whitlerd whitlerd     21376 Mar 11 09:24 stderr.txt
[2026-03-11 09:24:34] HITS file was successfully produced:
[2026-03-11 09:24:34] -rw------- 1 whitlerd whitlerd 188691928 Mar 11 09:23 shared/HITS.pool.root.1
[2026-03-11 09:24:34]  *** Contents of shared directory: ***
[2026-03-11 09:24:34] total 619056
[2026-03-11 09:24:34] -rw-r--r-- 2 whitlerd whitlerd 443099010 Mar 11 07:16 ATLAS.root_0
[2026-03-11 09:24:34] -rw-r--r-- 2 whitlerd whitlerd     15845 Mar 11 07:16 start_atlas.sh
[2026-03-11 09:24:34] -rw-r--r-- 2 whitlerd whitlerd    597539 Mar 11 07:16 input.tar.gz
[2026-03-11 09:24:34] -rw------- 1 whitlerd whitlerd 188691928 Mar 11 09:23 HITS.pool.root.1
[2026-03-11 09:24:34] -rw------- 1 whitlerd whitlerd   1495040 Mar 11 09:24 result.tar.gz
09:24:35 (809497): run_atlas exited; CPU time 29762.804987
09:24:35 (809497): called boinc_finish(0)

</stderr_txt>
]]>

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