Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
04:11:13 (636488): wrapper (7.7.26015): starting
04:11:13 (636488): wrapper: running run_atlas (--nthreads 9)
[2026-03-11 04:11:13] Arguments: --nthreads 9
[2026-03-11 04:11:13] Threads: 9
[2026-03-11 04:11:13] Checking for CVMFS
[2026-03-11 04:11:14] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-11 04:11:14] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-11 04:11:14] Running cvmfs_config stat atlas.cern.ch
[2026-03-11 04:11:14] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-11 04:11:14] 2.13.3.0 313591 104489 117720 157147 3 188 34708372 37030912 1832 16776704 0 85904473 99.991 3829807 24573 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-03-11 04:11:14] CVMFS is ok
[2026-03-11 04:11:14] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-11 04:11:14] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-11 04:11:14] Further information can be found at the LHC@home message board.
[2026-03-11 04:11:14] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-11 04:11:14] Checking for apptainer binary...
[2026-03-11 04:11:14] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-11 04:11:14] Running /usr/bin/apptainer --version
[2026-03-11 04:11:14] apptainer version 1.4.5-3.el9
[2026-03-11 04:11:14] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-11 04:11:14] c-205-37.aglt2.org
[2026-03-11 04:11:14] apptainer works
[2026-03-11 04:11:14] Set ATHENA_PROC_NUMBER=9
[2026-03-11 04:11:14] Set ATHENA_CORE_NUMBER=9
[2026-03-11 04:11:14] Starting ATLAS job with PandaID=7038572994
[2026-03-11 04:11:14] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-11 05:28:40]  *** The last 200 lines of the pilot log: ***
[2026-03-11 05:28:40]  guid=1e83f67b-f7ec-49c7-aa0c-c2b0f45b810d
[2026-03-11 05:28:40]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-03-11 05:28:40]  is_altstaged=None
[2026-03-11 05:28:40]  is_tar=False
[2026-03-11 05:28:40]  lfn=log.48955006._003754.job.log.tgz.1
[2026-03-11 05:28:40]  mtime=0
[2026-03-11 05:28:40]  protocol_id=None
[2026-03-11 05:28:40]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-03-11 05:28:40]  replicas=None
[2026-03-11 05:28:40]  scope=mc23_13p6TeV
[2026-03-11 05:28:40]  status=None
[2026-03-11 05:28:40]  status_code=0
[2026-03-11 05:28:40]  storage_token=
[2026-03-11 05:28:40]  surl=/tmp/boinchome/slots/2/PanDA_Pilot-7038572994/log.48955006._003754.job.log.tgz.1
[2026-03-11 05:28:40]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/43/22/log.48955006._003754.job.log.tgz.1
[2026-03-11 05:28:40]  workdir=None
[2026-03-11 05:28:40] ]
[2026-03-11 05:28:40] 2026-03-11 09:27:35,496 | INFO     | transferring file log.48955006._003754.job.log.tgz.1 from /tmp/boinchome/slots/2/PanDA_Pilot-7038572994/log.48955006._003754.job.log.tgz.1 to /tmp/boinchome/slots/
[2026-03-11 05:28:40] 2026-03-11 09:27:35,496 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/2/PanDA_Pilot-7038572994/log.48955006._003754.job.log.tgz.1 /tmp/boinchome/slots/2/log.48955006._003754.job
[2026-03-11 05:28:40] 2026-03-11 09:27:35,513 | INFO     | adding to output.list: log.48955006._003754.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/43/22/log.48955006._003754.job.log.tg
[2026-03-11 05:28:40] 2026-03-11 09:27:35,513 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-11 05:28:40] 2026-03-11 09:27:35,514 | INFO     | summary of transferred files:
[2026-03-11 05:28:40] 2026-03-11 09:27:35,514 | INFO     |  -- lfn=log.48955006._003754.job.log.tgz.1, status_code=0, status=transferred
[2026-03-11 05:28:40] 2026-03-11 09:27:35,514 | INFO     | stage-out finished correctly
[2026-03-11 05:28:40] 2026-03-11 09:27:36,186 | INFO     | time since job start (4568s) is within the limit (349056.0s)
[2026-03-11 05:28:40] 2026-03-11 09:27:36,272 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-11 05:28:40] 2026-03-11 09:27:37,005 | INFO     | job 7038572994 has state=finished
[2026-03-11 05:28:40] 2026-03-11 09:27:37,005 | INFO     | preparing for final server update for job 7038572994 in state='finished'
[2026-03-11 05:28:40] 2026-03-11 09:27:37,006 | INFO     | reading metadata from: /tmp/boinchome/slots/2/PanDA_Pilot-7038572994/jobReport.json
[2026-03-11 05:28:40] 2026-03-11 09:27:37,010 | INFO     | added worker_node to metadata from /tmp/boinchome/slots/2/workernode_map.json
[2026-03-11 05:28:40] 2026-03-11 09:27:37,011 | INFO     | this job has now completed (state=finished)
[2026-03-11 05:28:40] 2026-03-11 09:27:37,011 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-11 05:28:40] 2026-03-11 09:27:37,011 | INFO     | log transfer has been attempted: DONE
[2026-03-11 05:28:40] 2026-03-11 09:27:37,011 | INFO     | job 7038572994 has finished - writing final server update
[2026-03-11 05:28:40] 2026-03-11 09:27:37,012 | INFO     | total number of processed events: 400 (read)
[2026-03-11 05:28:40] 2026-03-11 09:27:37,019 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-7038572994/memory_monitor_summary.json (trf name=prmon)
[2026-03-11 05:28:40] 2026-03-11 09:27:37,020 | INFO     | extracted standard info from prmon json
[2026-03-11 05:28:40] 2026-03-11 09:27:37,020 | INFO     | extracted standard memory fields from prmon json
[2026-03-11 05:28:40] 2026-03-11 09:27:37,020 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-11 05:28:40] 2026-03-11 09:27:37,021 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-11 05:28:40] 2026-03-11 09:27:37,021 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-11 05:28:40] 2026-03-11 09:27:37,024 | INFO     | fitting pss+swap vs Time
[2026-03-11 05:28:40] 2026-03-11 09:27:37,024 | INFO     | sum of square deviations: 97479037.0
[2026-03-11 05:28:40] 2026-03-11 09:27:37,024 | INFO     | sum of deviations: -710074831.0
[2026-03-11 05:28:40] 2026-03-11 09:27:37,024 | INFO     | mean x: 1773219056.5
[2026-03-11 05:28:40] 2026-03-11 09:27:37,025 | INFO     | mean y: 2612943.882352941
[2026-03-11 05:28:40] 2026-03-11 09:27:37,025 | INFO     | intersect: 12919423169.143574
[2026-03-11 05:28:40] 2026-03-11 09:27:37,025 | INFO     | chi2: 0.0028832053802489662
[2026-03-11 05:28:40] 2026-03-11 09:27:37,025 | INFO     | current memory leak: -7.28 B/s (using 68 data points, chi2=0.00)
[2026-03-11 05:28:40] 2026-03-11 09:27:37,026 | INFO     | could have reported an average CPU frequency of 2600 MHz (6 samples)
[2026-03-11 05:28:40] 2026-03-11 09:27:37,026 | INFO     | ..............................
[2026-03-11 05:28:40] 2026-03-11 09:27:37,026 | INFO     | . Timing measurements:
[2026-03-11 05:28:40] 2026-03-11 09:27:37,026 | INFO     | . get job = 0 s
[2026-03-11 05:28:40] 2026-03-11 09:27:37,026 | INFO     | . initial setup = 6 s
[2026-03-11 05:28:40] 2026-03-11 09:27:37,026 | INFO     | . payload setup = 5 s
[2026-03-11 05:28:40] 2026-03-11 09:27:37,027 | INFO     | . stage-in = 0 s
[2026-03-11 05:28:40] 2026-03-11 09:27:37,027 | INFO     | . payload execution = 4546 s
[2026-03-11 05:28:40] 2026-03-11 09:27:37,027 | INFO     | . stage-out = 0 s
[2026-03-11 05:28:40] 2026-03-11 09:27:37,027 | INFO     | . log creation = 0 s
[2026-03-11 05:28:40] 2026-03-11 09:27:37,027 | INFO     | ..............................
[2026-03-11 05:28:40] 2026-03-11 09:27:37,501 | INFO     | 
[2026-03-11 05:28:40] 2026-03-11 09:27:37,501 | INFO     | job summary report
[2026-03-11 05:28:40] 2026-03-11 09:27:37,501 | INFO     | --------------------------------------------------
[2026-03-11 05:28:40] 2026-03-11 09:27:37,501 | INFO     | PanDA job id: 7038572994
[2026-03-11 05:28:40] 2026-03-11 09:27:37,502 | INFO     | task id: 48955006
[2026-03-11 05:28:40] 2026-03-11 09:27:37,502 | INFO     | errors: (none)
[2026-03-11 05:28:40] 2026-03-11 09:27:37,502 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-11 05:28:40] 2026-03-11 09:27:37,502 | INFO     | pilot state: finished 
[2026-03-11 05:28:40] 2026-03-11 09:27:37,502 | INFO     | transexitcode: 0
[2026-03-11 05:28:40] 2026-03-11 09:27:37,502 | INFO     | exeerrorcode: 0
[2026-03-11 05:28:40] 2026-03-11 09:27:37,502 | INFO     | exeerrordiag: 
[2026-03-11 05:28:40] 2026-03-11 09:27:37,502 | INFO     | exitcode: 0
[2026-03-11 05:28:40] 2026-03-11 09:27:37,503 | INFO     | exitmsg: OK
[2026-03-11 05:28:40] 2026-03-11 09:27:37,503 | INFO     | cpuconsumptiontime: 37995 s
[2026-03-11 05:28:40] 2026-03-11 09:27:37,503 | INFO     | nevents: 400
[2026-03-11 05:28:40] 2026-03-11 09:27:37,503 | INFO     | neventsw: 0
[2026-03-11 05:28:40] 2026-03-11 09:27:37,503 | INFO     | pid: 645782
[2026-03-11 05:28:40] 2026-03-11 09:27:37,503 | INFO     | pgrp: 645782
[2026-03-11 05:28:40] 2026-03-11 09:27:37,503 | INFO     | corecount: 9
[2026-03-11 05:28:40] 2026-03-11 09:27:37,503 | INFO     | event service: False
[2026-03-11 05:28:40] 2026-03-11 09:27:37,504 | INFO     | sizes: {0: 2279791, 1: 2280252, 12: 2280252, 4554: 2306509, 4555: 2315507, 4556: 2315563, 4557: 2315885}
[2026-03-11 05:28:40] 2026-03-11 09:27:37,504 | INFO     | --------------------------------------------------
[2026-03-11 05:28:40] 2026-03-11 09:27:37,504 | INFO     | 
[2026-03-11 05:28:40] 2026-03-11 09:27:37,504 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2026-03-11 05:28:40] 2026-03-11 09:27:37,522 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-11 05:28:40] 2026-03-11 09:27:37,522 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-11 05:28:40] 2026-03-11 09:27:37,523 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-11 05:28:40] 2026-03-11 09:27:37,523 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-11 05:28:40] 2026-03-11 09:27:37,523 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-11 05:28:40] 2026-03-11 09:27:37,523 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-11 05:28:40] 2026-03-11 09:27:37,523 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-11 05:28:40] 2026-03-11 09:27:37,523 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-11 05:28:40] 2026-03-11 09:27:37,523 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-11 05:28:40] 2026-03-11 09:27:37,524 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-11 05:28:40] 2026-03-11 09:27:37,524 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-11 05:28:40] 2026-03-11 09:27:37,524 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-11 05:28:40] 2026-03-11 09:27:37,524 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-11 05:28:40] 2026-03-11 09:27:37,524 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-11 05:28:40] 2026-03-11 09:27:37,524 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-11 05:28:40] 2026-03-11 09:27:37,524 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-11 05:28:40] 2026-03-11 09:27:37,524 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-11 05:28:40] 2026-03-11 09:27:37,525 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-11 05:28:40] 2026-03-11 09:27:37,525 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-11 05:28:40] 2026-03-11 09:27:37,525 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-11 05:28:40] 2026-03-11 09:27:37,525 | INFO     | job 7038572994 has completed (purged errors)
[2026-03-11 05:28:40] 2026-03-11 09:27:37,525 | INFO     | overall cleanup function is called
[2026-03-11 05:28:40] 2026-03-11 09:27:38,533 | INFO     | --- collectZombieJob: --- 10, [645782]
[2026-03-11 05:28:40] 2026-03-11 09:27:38,534 | INFO     | zombie collector waiting for pid 645782
[2026-03-11 05:28:40] 2026-03-11 09:27:38,534 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-11 05:28:40] 2026-03-11 09:27:38,534 | INFO     | collected zombie processes
[2026-03-11 05:28:40] 2026-03-11 09:27:38,534 | INFO     | will attempt to kill all subprocesses of pid=645782
[2026-03-11 05:28:40] 2026-03-11 09:27:38,732 | INFO     | process IDs to be killed: [645782] (in reverse order)
[2026-03-11 05:28:40] 2026-03-11 09:27:38,788 | WARNING  | found no corresponding commands to process id(s)
[2026-03-11 05:28:40] 2026-03-11 09:27:38,789 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-11 05:28:40] 2026-03-11 09:27:38,796 | INFO     | did not find any defunct processes belonging to 645782
[2026-03-11 05:28:40] 2026-03-11 09:27:38,802 | INFO     | did not find any defunct processes belonging to 645782
[2026-03-11 05:28:40] 2026-03-11 09:27:38,802 | INFO     | ready for new job
[2026-03-11 05:28:40] 2026-03-11 09:27:38,802 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-11 05:28:40] 2026-03-11 09:27:38,805 | INFO     | **************************************
[2026-03-11 05:28:40] 2026-03-11 09:27:38,805 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-11 05:28:40] 2026-03-11 09:27:38,805 | INFO     | **************************************
[2026-03-11 05:28:40] 2026-03-11 09:27:38,805 | INFO     | 
[2026-03-11 05:28:40] 2026-03-11 09:27:38,807 | INFO     | architecture information:
[2026-03-11 05:28:40] 2026-03-11 09:27:38,808 | INFO     | executing command: cat /etc/os-release
[2026-03-11 05:28:40] 2026-03-11 09:27:38,820 | INFO     | cat /etc/os-release:
[2026-03-11 05:28:40] NAME="CentOS Linux"
[2026-03-11 05:28:40] VERSION="7 (Core)"
[2026-03-11 05:28:40] ID="centos"
[2026-03-11 05:28:40] ID_LIKE="rhel fedora"
[2026-03-11 05:28:40] VERSION_ID="7"
[2026-03-11 05:28:40] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-11 05:28:40] ANSI_COLOR="0;31"
[2026-03-11 05:28:40] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-11 05:28:40] HOME_URL="https://www.centos.org/"
[2026-03-11 05:28:40] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-11 05:28:40] 
[2026-03-11 05:28:40] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-11 05:28:40] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-11 05:28:40] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-11 05:28:40] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-11 05:28:40] 
[2026-03-11 05:28:40] 2026-03-11 09:27:38,820 | INFO     | **************************************
[2026-03-11 05:28:40] 2026-03-11 09:27:39,022 | WARNING  | process 645782 can no longer be monitored (due to stat problems) - aborting
[2026-03-11 05:28:40] 2026-03-11 09:27:39,185 | INFO     | using path: /tmp/boinchome/slots/2/memory_monitor_summary.json (trf name=prmon)
[2026-03-11 05:28:40] 2026-03-11 09:27:39,323 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2026-03-11 05:28:40] 2026-03-11 09:27:39,338 | INFO     | sufficient remaining disk space (41080061952 B)
[2026-03-11 05:28:40] 2026-03-11 09:27:39,339 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-11 05:28:40] 2026-03-11 09:27:39,339 | INFO     | current server update state: UPDATING_FINAL
[2026-03-11 05:28:40] 2026-03-11 09:27:39,339 | INFO     | update_server=False
[2026-03-11 05:28:40] 2026-03-11 09:27:39,339 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-11 05:28:40] 2026-03-11 09:27:39,340 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-11 05:28:40] 2026-03-11 09:27:39,392 | INFO     | number of running child processes to parent process 645782: 1
[2026-03-11 05:28:40] 2026-03-11 09:27:39,392 | INFO     | maximum number of monitored processes: 6
[2026-03-11 05:28:40] 2026-03-11 09:27:39,393 | INFO     | aborting job monitoring since job object (job id=7038572994) has expired
[2026-03-11 05:28:40] 2026-03-11 09:27:39,393 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-11 05:28:40] 2026-03-11 09:27:39,393 | INFO     | will abort loop
[2026-03-11 05:28:40] 2026-03-11 09:27:39,630 | INFO     | all data control threads have been joined
[2026-03-11 05:28:40] 2026-03-11 09:27:40,344 | INFO     | [job] retrieve thread has finished
[2026-03-11 05:28:40] 2026-03-11 09:27:40,366 | INFO     | [job] create_data_payload thread has finished
[2026-03-11 05:28:40] 2026-03-11 09:27:40,398 | INFO     | [job] job monitor thread has finished
[2026-03-11 05:28:40] 2026-03-11 09:27:40,401 | INFO     | all job control threads have been joined
[2026-03-11 05:28:40] 2026-03-11 09:27:40,479 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-11 05:28:40] 2026-03-11 09:27:40,491 | INFO     | [payload] validate_post thread has finished
[2026-03-11 05:28:40] 2026-03-11 09:27:40,512 | INFO     | [payload] validate_pre thread has finished
[2026-03-11 05:28:40] 2026-03-11 09:27:40,548 | INFO     | all payload control threads have been joined
[2026-03-11 05:28:40] 2026-03-11 09:27:40,635 | INFO     | [data] control thread has finished
[2026-03-11 05:28:40] 2026-03-11 09:27:40,721 | INFO     | [payload] failed_post thread has finished
[2026-03-11 05:28:40] 2026-03-11 09:27:40,932 | INFO     | [data] copytool_in thread has finished
[2026-03-11 05:28:40] 2026-03-11 09:27:41,345 | INFO     | [data] copytool_out thread has finished
[2026-03-11 05:28:40] 2026-03-11 09:27:41,406 | INFO     | [job] control thread has finished
[2026-03-11 05:28:40] 2026-03-11 09:27:41,553 | INFO     | [payload] control thread has finished
[2026-03-11 05:28:40] 2026-03-11 09:27:41,612 | INFO     | [payload] execute_payloads thread has finished
[2026-03-11 05:28:40] 2026-03-11 09:27:41,613 | INFO     | [job] validate thread has finished
[2026-03-11 05:28:40] 2026-03-11 09:27:42,142 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-11 05:28:40] 2026-03-11 09:27:42,378 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-11 05:28:40] 2026-03-11 09:27:43,148 | INFO     | [job] queue monitor thread has finished
[2026-03-11 05:28:40] 2026-03-11 09:27:46,383 | INFO     | [data] queue_monitor thread has finished
[2026-03-11 05:28:40] 2026-03-11 09:28:09,497 | INFO     | PID=640185 has CPU usage=5.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-11 05:28:40] 2026-03-11 09:28:09,498 | INFO     | .. there are 3 such processes running
[2026-03-11 05:28:40] 2026-03-11 09:28:09,498 | INFO     | found 0 job(s) in 20 queues
[2026-03-11 05:28:40] 2026-03-11 09:28:09,498 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-11 05:28:40] 2026-03-11 09:28:09,498 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-11 05:28:40] 2026-03-11 09:28:34,683 | INFO     | [monitor] cgroup control has ended
[2026-03-11 05:28:40] 2026-03-11 09:28:35,411 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140108886357824)>', '<ExcThread(monitor, started 140108250466048)>']
[2026-03-11 05:28:40] 2026-03-11 09:28:35,624 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-11 05:28:40] 2026-03-11 09:28:35,624 | INFO     | [monitor] control thread has ended
[2026-03-11 05:28:40] 2026-03-11 09:28:40,437 | INFO     | all workflow threads have been joined
[2026-03-11 05:28:40] 2026-03-11 09:28:40,437 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-11 05:28:40] 2026-03-11 09:28:40,437 | INFO     | traces error code: 0
[2026-03-11 05:28:40] 2026-03-11 09:28:40,438 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-11 05:28:40] 2026-03-11 09:28:40,549 [wrapper] ==== pilot stdout END ====
[2026-03-11 05:28:40] 2026-03-11 09:28:40,552 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-11 05:28:40] 2026-03-11 09:28:40,555 [wrapper] pilotpid: 640185
[2026-03-11 05:28:40] 2026-03-11 09:28:40,557 [wrapper] Pilot exit status: 0
[2026-03-11 05:28:40] 2026-03-11 09:28:40,566 [wrapper] pandaids: 7038572994
[2026-03-11 05:28:40] 2026-03-11 09:28:40,605 [wrapper] cleanup supervisor_pilot  716435 640186
[2026-03-11 05:28:40] 2026-03-11 09:28:40,607 [wrapper] Test setup, not cleaning
[2026-03-11 05:28:40] 2026-03-11 09:28:40,610 [wrapper] apfmon messages muted
[2026-03-11 05:28:40] 2026-03-11 09:28:40,612 [wrapper] ==== wrapper stdout END ====
[2026-03-11 05:28:40] 2026-03-11 09:28:40,615 [wrapper] ==== wrapper stderr END ====
[2026-03-11 05:28:40]  *** Error codes and diagnostics ***
[2026-03-11 05:28:40]     "exeErrorCode": 0,
[2026-03-11 05:28:40]     "exeErrorDiag": "",
[2026-03-11 05:28:40]     "pilotErrorCode": 0,
[2026-03-11 05:28:40]     "pilotErrorDiag": "",
[2026-03-11 05:28:40]  *** Listing of results directory ***
[2026-03-11 05:28:40] total 616924
[2026-03-11 05:28:40] -rw-r--r--. 1 boincer umatlas      5111 Mar  5 01:14 queuedata.json
[2026-03-11 05:28:40] -rw-r--r--. 1 boincer umatlas    584627 Mar  5 01:14 pilot3.tar.gz
[2026-03-11 05:28:40] -rwx------. 1 boincer umatlas     36322 Mar  5 01:14 runpilot2-wrapper.sh
[2026-03-11 05:28:40] -rw-r--r--. 1 boincer umatlas       100 Mar 11 04:11 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-11 05:28:40] -rwxr-xr-x. 1 boincer umatlas      7986 Mar 11 04:11 run_atlas
[2026-03-11 05:28:40] -rw-r--r--. 1 boincer umatlas       105 Mar 11 04:11 job.xml
[2026-03-11 05:28:40] -rw-r--r--. 2 boincer umatlas 444954201 Mar 11 04:11 EVNT.46701403._000076.pool.root.1
[2026-03-11 05:28:40] -rw-r--r--. 2 boincer umatlas    597952 Mar 11 04:11 input.tar.gz
[2026-03-11 05:28:40] -rw-r--r--. 2 boincer umatlas     15845 Mar 11 04:11 start_atlas.sh
[2026-03-11 05:28:40] drwxrwx--x. 2 boincer umatlas      4096 Mar 11 04:11 shared
[2026-03-11 05:28:40] -rw-r--r--. 1 boincer umatlas         0 Mar 11 04:11 boinc_lockfile
[2026-03-11 05:28:40] -rw-r--r--. 1 boincer umatlas      2561 Mar 11 04:11 pandaJob.out
[2026-03-11 05:28:40] -rw-------. 1 boincer umatlas   1006644 Mar 11 04:11 agis_schedconf.cvmfs.json
[2026-03-11 05:28:40] -rw-------. 1 boincer umatlas   1511578 Mar 11 04:11 agis_ddmendpoints.agis.ALL.json
[2026-03-11 05:28:40] -rw-------. 1 boincer umatlas       440 Mar 11 04:11 workernode_map.json
[2026-03-11 05:28:40] drwx------. 5 boincer umatlas      4096 Mar 11 04:11 pilot3
[2026-03-11 05:28:40] -rw-r--r--. 1 boincer umatlas      6531 Mar 11 05:18 init_data.xml
[2026-03-11 05:28:40] -rw-------. 1 boincer umatlas 180826466 Mar 11 05:27 HITS.48955006._003754.pool.root.1
[2026-03-11 05:28:40] -rw-r--r--. 1 boincer umatlas       530 Mar 11 05:27 boinc_task_state.xml
[2026-03-11 05:28:40] -rw-------. 1 boincer umatlas        95 Mar 11 05:27 pilot_heartbeat.json
[2026-03-11 05:28:40] -rw-------. 1 boincer umatlas      1031 Mar 11 05:27 memory_monitor_summary.json
[2026-03-11 05:28:40] -rw-------. 1 boincer umatlas    331063 Mar 11 05:27 log.48955006._003754.job.log.tgz.1
[2026-03-11 05:28:40] -rw-------. 1 boincer umatlas      6376 Mar 11 05:27 heartbeat.json
[2026-03-11 05:28:40] -rw-r--r--. 1 boincer umatlas        27 Mar 11 05:28 wrapper_checkpoint.txt
[2026-03-11 05:28:40] -rw-r--r--. 1 boincer umatlas      8192 Mar 11 05:28 boinc_mmap_file
[2026-03-11 05:28:40] -rw-------. 1 boincer umatlas      5337 Mar 11 05:28 pilotlog.txt
[2026-03-11 05:28:40] -rw-------. 1 boincer umatlas    679254 Mar 11 05:28 log.48955006._003754.job.log.1
[2026-03-11 05:28:40] -rw-------. 1 boincer umatlas       357 Mar 11 05:28 output.list
[2026-03-11 05:28:40] -rw-r--r--. 1 boincer umatlas       620 Mar 11 05:28 runtime_log
[2026-03-11 05:28:40] -rw-------. 1 boincer umatlas   1024000 Mar 11 05:28 result.tar.gz
[2026-03-11 05:28:40] -rw-r--r--. 1 boincer umatlas      8816 Mar 11 05:28 runtime_log.err
[2026-03-11 05:28:40] -rw-------. 1 boincer umatlas       651 Mar 11 05:28 eFBLDms9GI9n9Rq4apOajLDm4fhM0noT9bVooX4SDmFvKLDmEqVN0m.diag
[2026-03-11 05:28:40] -rw-r--r--. 1 boincer umatlas     21388 Mar 11 05:28 stderr.txt
[2026-03-11 05:28:40] HITS file was successfully produced:
[2026-03-11 05:28:40] -rw-------. 1 boincer umatlas 180826466 Mar 11 05:27 shared/HITS.pool.root.1
[2026-03-11 05:28:40]  *** Contents of shared directory: ***
[2026-03-11 05:28:40] total 612724
[2026-03-11 05:28:40] -rw-r--r--. 2 boincer umatlas 444954201 Mar 11 04:11 ATLAS.root_0
[2026-03-11 05:28:40] -rw-r--r--. 2 boincer umatlas    597952 Mar 11 04:11 input.tar.gz
[2026-03-11 05:28:40] -rw-r--r--. 2 boincer umatlas     15845 Mar 11 04:11 start_atlas.sh
[2026-03-11 05:28:40] -rw-------. 1 boincer umatlas 180826466 Mar 11 05:27 HITS.pool.root.1
[2026-03-11 05:28:40] -rw-------. 1 boincer umatlas   1024000 Mar 11 05:28 result.tar.gz
05:28:42 (636488): run_atlas exited; CPU time 38085.825129
05:28:42 (636488): called boinc_finish(0)

</stderr_txt>
]]>

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