Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
12:00:27 (2158083): wrapper (7.7.26015): starting
12:00:27 (2158083): wrapper: running run_atlas (--nthreads 4)
[2026-03-12 12:00:27] Arguments: --nthreads 4
[2026-03-12 12:00:27] Threads: 4
[2026-03-12 12:00:27] Checking for CVMFS
[2026-03-12 12:00:27] No cvmfs_config command found, will try listing directly
[2026-03-12 12:00:27] CVMFS is ok
[2026-03-12 12:00:27] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-12 12:00:27] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-12 12:00:27] Further information can be found at the LHC@home message board.
[2026-03-12 12:00:27] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-12 12:00:27] Checking for apptainer binary...
[2026-03-12 12:00:27] which: no apptainer in ((null))
[2026-03-12 12:00:27] apptainer is not installed, using version from CVMFS
[2026-03-12 12:00:27] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-12 12:00:27] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot228/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut19.grid.cesnet.cz
[2026-03-12 12:00:27] apptainer works
[2026-03-12 12:00:27] Set ATHENA_PROC_NUMBER=4
[2026-03-12 12:00:27] Set ATHENA_CORE_NUMBER=4
[2026-03-12 12:00:27] Starting ATLAS job with PandaID=7038571578
[2026-03-12 12:00:27] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot228/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-12 13:21:06]  *** The last 200 lines of the pilot log: ***
[2026-03-12 13:21:06]  guid=1e10af20-88d0-4958-af19-2241622bbdc8
[2026-03-12 13:21:06]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-03-12 13:21:06]  is_altstaged=None
[2026-03-12 13:21:06]  is_tar=False
[2026-03-12 13:21:06]  lfn=log.48955006._003370.job.log.tgz.1
[2026-03-12 13:21:06]  mtime=0
[2026-03-12 13:21:06]  protocol_id=None
[2026-03-12 13:21:06]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-03-12 13:21:06]  replicas=None
[2026-03-12 13:21:06]  scope=mc23_13p6TeV
[2026-03-12 13:21:06]  status=None
[2026-03-12 13:21:06]  status_code=0
[2026-03-12 13:21:06]  storage_token=
[2026-03-12 13:21:06]  surl=/var/lib/boinc/var/slot228/slots/0/PanDA_Pilot-7038571578/log.48955006._003370.job.log.tgz.1
[2026-03-12 13:21:06]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/66/7e/log.48955006._003370.job.log.tgz.1
[2026-03-12 13:21:06]  workdir=None
[2026-03-12 13:21:06] ]
[2026-03-12 13:21:06] 2026-03-12 12:20:00,938 | INFO     | transferring file log.48955006._003370.job.log.tgz.1 from /var/lib/boinc/var/slot228/slots/0/PanDA_Pilot-7038571578/log.48955006._003370.job.log.tgz.1 to /var/lib/
[2026-03-12 13:21:06] 2026-03-12 12:20:00,938 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/var/slot228/slots/0/PanDA_Pilot-7038571578/log.48955006._003370.job.log.tgz.1 /var/lib/boinc/var/slot228/slots/0/
[2026-03-12 13:21:06] 2026-03-12 12:20:00,955 | INFO     | adding to output.list: log.48955006._003370.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/66/7e/log.48955006._003370.job.log.tg
[2026-03-12 13:21:06] 2026-03-12 12:20:00,955 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-12 13:21:06] 2026-03-12 12:20:00,955 | INFO     | summary of transferred files:
[2026-03-12 13:21:06] 2026-03-12 12:20:00,955 | INFO     |  -- lfn=log.48955006._003370.job.log.tgz.1, status_code=0, status=transferred
[2026-03-12 13:21:06] 2026-03-12 12:20:00,956 | INFO     | stage-out finished correctly
[2026-03-12 13:21:06] 2026-03-12 12:20:01,167 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-12 13:21:06] 2026-03-12 12:20:01,219 | INFO     | job 7038571578 has state=finished
[2026-03-12 13:21:06] 2026-03-12 12:20:01,219 | INFO     | preparing for final server update for job 7038571578 in state='finished'
[2026-03-12 13:21:06] 2026-03-12 12:20:01,219 | INFO     | reading metadata from: /var/lib/boinc/var/slot228/slots/0/PanDA_Pilot-7038571578/jobReport.json
[2026-03-12 13:21:06] 2026-03-12 12:20:01,222 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot228/slots/0/workernode_map.json
[2026-03-12 13:21:06] 2026-03-12 12:20:01,222 | INFO     | this job has now completed (state=finished)
[2026-03-12 13:21:06] 2026-03-12 12:20:01,222 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-12 13:21:06] 2026-03-12 12:20:01,222 | INFO     | log transfer has been attempted: DONE
[2026-03-12 13:21:06] 2026-03-12 12:20:01,222 | INFO     | job 7038571578 has finished - writing final server update
[2026-03-12 13:21:06] 2026-03-12 12:20:01,223 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_867322/.job.ad'
[2026-03-12 13:21:06] 2026-03-12 12:20:01,223 | INFO     | total number of processed events: 400 (read)
[2026-03-12 13:21:06] 2026-03-12 12:20:01,241 | INFO     | using path: /var/lib/boinc/var/slot228/slots/0/PanDA_Pilot-7038571578/memory_monitor_summary.json (trf name=prmon)
[2026-03-12 13:21:06] 2026-03-12 12:20:01,242 | INFO     | extracted standard info from prmon json
[2026-03-12 13:21:06] 2026-03-12 12:20:01,242 | INFO     | extracted standard memory fields from prmon json
[2026-03-12 13:21:06] 2026-03-12 12:20:01,242 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-12 13:21:06] 2026-03-12 12:20:01,242 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-12 13:21:06] 2026-03-12 12:20:01,242 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-12 13:21:06] 2026-03-12 12:20:01,243 | INFO     | fitting pss+swap vs Time
[2026-03-12 13:21:06] 2026-03-12 12:20:01,243 | INFO     | sum of square deviations: 110960220.0
[2026-03-12 13:21:06] 2026-03-12 12:20:01,244 | INFO     | sum of deviations: 472249861.0
[2026-03-12 13:21:06] 2026-03-12 12:20:01,244 | INFO     | mean x: 1773315701.0
[2026-03-12 13:21:06] 2026-03-12 12:20:01,244 | INFO     | mean y: 2326762.38028169
[2026-03-12 13:21:06] 2026-03-12 12:20:01,244 | INFO     | intersect: -7544955437.550177
[2026-03-12 13:21:06] 2026-03-12 12:20:01,244 | INFO     | chi2: 0.000127509526439603
[2026-03-12 13:21:06] 2026-03-12 12:20:01,244 | INFO     | current memory leak: 4.26 B/s (using 71 data points, chi2=0.00)
[2026-03-12 13:21:06] 2026-03-12 12:20:01,244 | INFO     | could have reported an average CPU frequency of 3539 MHz (6 samples)
[2026-03-12 13:21:06] 2026-03-12 12:20:01,244 | INFO     | ..............................
[2026-03-12 13:21:06] 2026-03-12 12:20:01,244 | INFO     | . Timing measurements:
[2026-03-12 13:21:06] 2026-03-12 12:20:01,244 | INFO     | . get job = 0 s
[2026-03-12 13:21:06] 2026-03-12 12:20:01,244 | INFO     | . initial setup = 5 s
[2026-03-12 13:21:06] 2026-03-12 12:20:01,244 | INFO     | . payload setup = 5 s
[2026-03-12 13:21:06] 2026-03-12 12:20:01,244 | INFO     | . stage-in = 0 s
[2026-03-12 13:21:06] 2026-03-12 12:20:01,244 | INFO     | . payload execution = 4739 s
[2026-03-12 13:21:06] 2026-03-12 12:20:01,244 | INFO     | . stage-out = 0 s
[2026-03-12 13:21:06] 2026-03-12 12:20:01,244 | INFO     | . log creation = 0 s
[2026-03-12 13:21:06] 2026-03-12 12:20:01,244 | INFO     | ..............................
[2026-03-12 13:21:06] 2026-03-12 12:20:01,294 | INFO     | 
[2026-03-12 13:21:06] 2026-03-12 12:20:01,294 | INFO     | job summary report
[2026-03-12 13:21:06] 2026-03-12 12:20:01,294 | INFO     | --------------------------------------------------
[2026-03-12 13:21:06] 2026-03-12 12:20:01,294 | INFO     | PanDA job id: 7038571578
[2026-03-12 13:21:06] 2026-03-12 12:20:01,294 | INFO     | task id: 48955006
[2026-03-12 13:21:06] 2026-03-12 12:20:01,294 | INFO     | errors: (none)
[2026-03-12 13:21:06] 2026-03-12 12:20:01,294 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-12 13:21:06] 2026-03-12 12:20:01,294 | INFO     | pilot state: finished 
[2026-03-12 13:21:06] 2026-03-12 12:20:01,294 | INFO     | transexitcode: 0
[2026-03-12 13:21:06] 2026-03-12 12:20:01,294 | INFO     | exeerrorcode: 0
[2026-03-12 13:21:06] 2026-03-12 12:20:01,294 | INFO     | exeerrordiag: 
[2026-03-12 13:21:06] 2026-03-12 12:20:01,294 | INFO     | exitcode: 0
[2026-03-12 13:21:06] 2026-03-12 12:20:01,294 | INFO     | exitmsg: OK
[2026-03-12 13:21:06] 2026-03-12 12:20:01,294 | INFO     | cpuconsumptiontime: 18165 s
[2026-03-12 13:21:06] 2026-03-12 12:20:01,294 | INFO     | nevents: 400
[2026-03-12 13:21:06] 2026-03-12 12:20:01,294 | INFO     | neventsw: 0
[2026-03-12 13:21:06] 2026-03-12 12:20:01,294 | INFO     | pid: 2169382
[2026-03-12 13:21:06] 2026-03-12 12:20:01,294 | INFO     | pgrp: 2169382
[2026-03-12 13:21:06] 2026-03-12 12:20:01,294 | INFO     | corecount: 4
[2026-03-12 13:21:06] 2026-03-12 12:20:01,294 | INFO     | event service: False
[2026-03-12 13:21:06] 2026-03-12 12:20:01,294 | INFO     | sizes: {0: 2280236, 11: 2280236, 4748: 2306547, 4750: 2315763}
[2026-03-12 13:21:06] 2026-03-12 12:20:01,294 | INFO     | --------------------------------------------------
[2026-03-12 13:21:06] 2026-03-12 12:20:01,294 | INFO     | 
[2026-03-12 13:21:06] 2026-03-12 12:20:01,294 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot228/slots/0
[2026-03-12 13:21:06] 2026-03-12 12:20:01,311 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-12 13:21:06] 2026-03-12 12:20:01,311 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-12 13:21:06] 2026-03-12 12:20:01,311 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-12 13:21:06] 2026-03-12 12:20:01,311 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-12 13:21:06] 2026-03-12 12:20:01,311 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-12 13:21:06] 2026-03-12 12:20:01,311 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-12 13:21:06] 2026-03-12 12:20:01,311 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-12 13:21:06] 2026-03-12 12:20:01,311 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-12 13:21:06] 2026-03-12 12:20:01,311 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-12 13:21:06] 2026-03-12 12:20:01,311 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-12 13:21:06] 2026-03-12 12:20:01,311 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-12 13:21:06] 2026-03-12 12:20:01,311 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-12 13:21:06] 2026-03-12 12:20:01,311 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-12 13:21:06] 2026-03-12 12:20:01,312 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-12 13:21:06] 2026-03-12 12:20:01,312 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-12 13:21:06] 2026-03-12 12:20:01,312 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-12 13:21:06] 2026-03-12 12:20:01,312 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-12 13:21:06] 2026-03-12 12:20:01,312 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-12 13:21:06] 2026-03-12 12:20:01,312 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-12 13:21:06] 2026-03-12 12:20:01,312 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-12 13:21:06] 2026-03-12 12:20:01,312 | INFO     | job 7038571578 has completed (purged errors)
[2026-03-12 13:21:06] 2026-03-12 12:20:01,312 | INFO     | overall cleanup function is called
[2026-03-12 13:21:06] 2026-03-12 12:20:02,319 | INFO     | --- collectZombieJob: --- 10, [2169382]
[2026-03-12 13:21:06] 2026-03-12 12:20:02,319 | INFO     | zombie collector waiting for pid 2169382
[2026-03-12 13:21:06] 2026-03-12 12:20:02,319 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-12 13:21:06] 2026-03-12 12:20:02,319 | INFO     | collected zombie processes
[2026-03-12 13:21:06] 2026-03-12 12:20:02,319 | INFO     | will attempt to kill all subprocesses of pid=2169382
[2026-03-12 13:21:06] 2026-03-12 12:20:02,875 | INFO     | process IDs to be killed: [2169382] (in reverse order)
[2026-03-12 13:21:06] 2026-03-12 12:20:03,130 | WARNING  | found no corresponding commands to process id(s)
[2026-03-12 13:21:06] 2026-03-12 12:20:03,130 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-12 13:21:06] 2026-03-12 12:20:03,172 | INFO     | did not find any defunct processes belonging to 2169382
[2026-03-12 13:21:06] 2026-03-12 12:20:03,207 | INFO     | did not find any defunct processes belonging to 2169382
[2026-03-12 13:21:06] 2026-03-12 12:20:03,208 | INFO     | ready for new job
[2026-03-12 13:21:06] 2026-03-12 12:20:03,208 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-12 13:21:06] 2026-03-12 12:20:03,209 | INFO     | **************************************
[2026-03-12 13:21:06] 2026-03-12 12:20:03,209 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-12 13:21:06] 2026-03-12 12:20:03,209 | INFO     | **************************************
[2026-03-12 13:21:06] 2026-03-12 12:20:03,209 | INFO     | 
[2026-03-12 13:21:06] 2026-03-12 12:20:03,214 | INFO     | architecture information:
[2026-03-12 13:21:06] 2026-03-12 12:20:03,215 | INFO     | executing command: cat /etc/os-release
[2026-03-12 13:21:06] 2026-03-12 12:20:03,236 | INFO     | cat /etc/os-release:
[2026-03-12 13:21:06] NAME="CentOS Linux"
[2026-03-12 13:21:06] VERSION="7 (Core)"
[2026-03-12 13:21:06] ID="centos"
[2026-03-12 13:21:06] ID_LIKE="rhel fedora"
[2026-03-12 13:21:06] VERSION_ID="7"
[2026-03-12 13:21:06] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-12 13:21:06] ANSI_COLOR="0;31"
[2026-03-12 13:21:06] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-12 13:21:06] HOME_URL="https://www.centos.org/"
[2026-03-12 13:21:06] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-12 13:21:06] 
[2026-03-12 13:21:06] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-12 13:21:06] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-12 13:21:06] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-12 13:21:06] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-12 13:21:06] 
[2026-03-12 13:21:06] 2026-03-12 12:20:03,236 | INFO     | **************************************
[2026-03-12 13:21:06] 2026-03-12 12:20:03,739 | INFO     | executing command: df -mP /var/lib/boinc/var/slot228/slots/0
[2026-03-12 13:21:06] 2026-03-12 12:20:03,758 | INFO     | sufficient remaining disk space (20499660800 B)
[2026-03-12 13:21:06] 2026-03-12 12:20:03,758 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-12 13:21:06] 2026-03-12 12:20:03,758 | INFO     | current server update state: UPDATING_FINAL
[2026-03-12 13:21:06] 2026-03-12 12:20:03,758 | INFO     | update_server=False
[2026-03-12 13:21:06] 2026-03-12 12:20:03,758 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-12 13:21:06] 2026-03-12 12:20:03,867 | INFO     | all data control threads have been joined
[2026-03-12 13:21:06] 2026-03-12 12:20:03,872 | INFO     | all job control threads have been joined
[2026-03-12 13:21:06] 2026-03-12 12:20:04,014 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-12 13:21:06] 2026-03-12 12:20:04,299 | WARNING  | process 2169382 can no longer be monitored (due to stat problems) - aborting
[2026-03-12 13:21:06] 2026-03-12 12:20:04,667 | INFO     | using path: /var/lib/boinc/var/slot228/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-03-12 13:21:06] 2026-03-12 12:20:04,763 | INFO     | [job] retrieve thread has finished
[2026-03-12 13:21:06] 2026-03-12 12:20:04,778 | INFO     | all payload control threads have been joined
[2026-03-12 13:21:06] 2026-03-12 12:20:04,857 | INFO     | [payload] execute_payloads thread has finished
[2026-03-12 13:21:06] 2026-03-12 12:20:04,872 | INFO     | [data] control thread has finished
[2026-03-12 13:21:06] 2026-03-12 12:20:04,877 | INFO     | [job] control thread has finished
[2026-03-12 13:21:06] 2026-03-12 12:20:05,229 | INFO     | [payload] validate_post thread has finished
[2026-03-12 13:21:06] 2026-03-12 12:20:05,245 | INFO     | number of running child processes to parent process 2169382: 1
[2026-03-12 13:21:06] 2026-03-12 12:20:05,245 | INFO     | maximum number of monitored processes: 6
[2026-03-12 13:21:06] 2026-03-12 12:20:05,245 | INFO     | aborting job monitoring since job object (job id=7038571578) has expired
[2026-03-12 13:21:06] 2026-03-12 12:20:05,245 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-12 13:21:06] 2026-03-12 12:20:05,245 | INFO     | will abort loop
[2026-03-12 13:21:06] 2026-03-12 12:20:05,309 | INFO     | [job] validate thread has finished
[2026-03-12 13:21:06] 2026-03-12 12:20:05,448 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-12 13:21:06] 2026-03-12 12:20:05,461 | INFO     | [job] create_data_payload thread has finished
[2026-03-12 13:21:06] 2026-03-12 12:20:05,564 | INFO     | [data] copytool_in thread has finished
[2026-03-12 13:21:06] 2026-03-12 12:20:05,658 | INFO     | [payload] validate_pre thread has finished
[2026-03-12 13:21:06] 2026-03-12 12:20:05,716 | INFO     | [payload] failed_post thread has finished
[2026-03-12 13:21:06] 2026-03-12 12:20:05,783 | INFO     | [payload] control thread has finished
[2026-03-12 13:21:06] 2026-03-12 12:20:06,019 | INFO     | [data] copytool_out thread has finished
[2026-03-12 13:21:06] 2026-03-12 12:20:06,250 | INFO     | [job] job monitor thread has finished
[2026-03-12 13:21:06] 2026-03-12 12:20:06,302 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-12 13:21:06] 2026-03-12 12:20:07,224 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-12 13:21:06] 2026-03-12 12:20:07,307 | INFO     | [job] queue monitor thread has finished
[2026-03-12 13:21:06] 2026-03-12 12:20:11,229 | INFO     | [data] queue_monitor thread has finished
[2026-03-12 13:21:06] 2026-03-12 12:20:34,114 | INFO     | PID=2162767 has CPU usage=8.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-12 13:21:06] 2026-03-12 12:20:34,114 | INFO     | .. there are 45 such processes running
[2026-03-12 13:21:06] 2026-03-12 12:20:34,114 | INFO     | found 0 job(s) in 20 queues
[2026-03-12 13:21:06] 2026-03-12 12:20:34,114 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-12 13:21:06] 2026-03-12 12:20:34,114 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-12 13:21:06] 2026-03-12 12:20:47,623 | INFO     | [monitor] cgroup control has ended
[2026-03-12 13:21:06] 2026-03-12 12:20:49,347 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22612462450496)>', '<ExcThread(monitor, started 22612217693952)>']
[2026-03-12 13:21:06] 2026-03-12 12:20:50,194 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-12 13:21:06] 2026-03-12 12:20:50,194 | INFO     | [monitor] control thread has ended
[2026-03-12 13:21:06] 2026-03-12 12:20:54,372 | INFO     | all workflow threads have been joined
[2026-03-12 13:21:06] 2026-03-12 12:20:54,372 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-12 13:21:06] 2026-03-12 12:20:54,372 | INFO     | traces error code: 0
[2026-03-12 13:21:06] 2026-03-12 12:20:54,372 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-12 13:21:06] 2026-03-12 12:20:54,616 [wrapper] ==== pilot stdout END ====
[2026-03-12 13:21:06] 2026-03-12 12:20:54,618 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-12 13:21:06] 2026-03-12 12:20:54,631 [wrapper] pilotpid: 2162767
[2026-03-12 13:21:06] 2026-03-12 12:20:54,634 [wrapper] Pilot exit status: 0
[2026-03-12 13:21:06] 2026-03-12 12:20:54,666 [wrapper] pandaids: 7038571578
[2026-03-12 13:21:06] 2026-03-12 12:20:54,792 [wrapper] cleanup supervisor_pilot 2837187 2162768
[2026-03-12 13:21:06] 2026-03-12 12:20:54,795 [wrapper] Test setup, not cleaning
[2026-03-12 13:21:06] 2026-03-12 12:20:54,798 [wrapper] apfmon messages muted
[2026-03-12 13:21:06] 2026-03-12 12:20:54,801 [wrapper] ==== wrapper stdout END ====
[2026-03-12 13:21:06] 2026-03-12 12:20:54,803 [wrapper] ==== wrapper stderr END ====
[2026-03-12 13:21:06]  *** Error codes and diagnostics ***
[2026-03-12 13:21:06]     "exeErrorCode": 0,
[2026-03-12 13:21:06]     "exeErrorDiag": "",
[2026-03-12 13:21:06]     "pilotErrorCode": 0,
[2026-03-12 13:21:06]     "pilotErrorDiag": "",
[2026-03-12 13:21:06]  *** Listing of results directory ***
[2026-03-12 13:21:06] total 623660
[2026-03-12 13:21:06] -rwx------. 1 boinc boinc     36322 Mar  5 07:14 runpilot2-wrapper.sh
[2026-03-12 13:21:06] -rw-r--r--. 1 boinc boinc      5111 Mar  5 07:14 queuedata.json
[2026-03-12 13:21:06] -rw-r--r--. 1 boinc boinc    584627 Mar  5 07:14 pilot3.tar.gz
[2026-03-12 13:21:06] -rw-r--r--. 1 boinc boinc       100 Mar 12 12:00 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-12 13:21:06] -rwxr-xr-x. 1 boinc boinc      7986 Mar 12 12:00 run_atlas
[2026-03-12 13:21:06] -rw-r--r--. 1 boinc boinc       105 Mar 12 12:00 job.xml
[2026-03-12 13:21:06] -rw-r--r--. 2 boinc boinc 441616893 Mar 12 12:00 EVNT.46701403._000068.pool.root.1
[2026-03-12 13:21:06] -rw-r--r--. 2 boinc boinc     15845 Mar 12 12:00 start_atlas.sh
[2026-03-12 13:21:06] drwxrwx--x. 2 boinc boinc      4096 Mar 12 12:00 shared
[2026-03-12 13:21:06] -rw-r--r--. 2 boinc boinc    597950 Mar 12 12:00 input.tar.gz
[2026-03-12 13:21:06] -rw-r--r--. 1 boinc boinc      6708 Mar 12 12:00 init_data.xml
[2026-03-12 13:21:06] -rw-r--r--. 1 boinc boinc         0 Mar 12 12:00 boinc_lockfile
[2026-03-12 13:21:06] -rw-r--r--. 1 boinc boinc      2561 Mar 12 12:00 pandaJob.out
[2026-03-12 13:21:06] -rw-------. 1 boinc boinc   1006241 Mar 12 12:00 agis_schedconf.cvmfs.json
[2026-03-12 13:21:06] -rw-------. 1 boinc boinc   1511578 Mar 12 12:00 agis_ddmendpoints.agis.ALL.json
[2026-03-12 13:21:06] -rw-------. 1 boinc boinc       444 Mar 12 12:00 workernode_map.json
[2026-03-12 13:21:06] drwx------. 5 boinc boinc      4096 Mar 12 12:00 pilot3
[2026-03-12 13:21:06] -rw-------. 1 boinc boinc 191119452 Mar 12 13:19 HITS.48955006._003370.pool.root.1
[2026-03-12 13:21:06] -rw-r--r--. 1 boinc boinc       529 Mar 12 13:19 boinc_task_state.xml
[2026-03-12 13:21:06] -rw-------. 1 boinc boinc        95 Mar 12 13:19 pilot_heartbeat.json
[2026-03-12 13:21:06] -rw-------. 1 boinc boinc      1044 Mar 12 13:19 memory_monitor_summary.json
[2026-03-12 13:21:06] -rw-------. 1 boinc boinc    275674 Mar 12 13:20 log.48955006._003370.job.log.tgz.1
[2026-03-12 13:21:06] -rw-------. 1 boinc boinc      6352 Mar 12 13:20 heartbeat.json
[2026-03-12 13:21:06] -rw-r--r--. 1 boinc boinc        26 Mar 12 13:20 wrapper_checkpoint.txt
[2026-03-12 13:21:06] -rw-------. 1 boinc boinc      5363 Mar 12 13:20 pilotlog.txt
[2026-03-12 13:21:06] -rw-------. 1 boinc boinc    696589 Mar 12 13:20 log.48955006._003370.job.log.1
[2026-03-12 13:21:06] -rw-------. 1 boinc boinc       357 Mar 12 13:20 output.list
[2026-03-12 13:21:06] -rw-r--r--. 1 boinc boinc       620 Mar 12 13:20 runtime_log
[2026-03-12 13:21:06] -rw-------. 1 boinc boinc    993280 Mar 12 13:20 result.tar.gz
[2026-03-12 13:21:06] -rw-r--r--. 1 boinc boinc      9221 Mar 12 13:20 runtime_log.err
[2026-03-12 13:21:06] -rw-------. 1 boinc boinc       663 Mar 12 13:20 iEqLDmh9GI9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmnxMLDmXOWQfm.diag
[2026-03-12 13:21:06] -rw-r--r--. 1 boinc boinc      8192 Mar 12 13:21 boinc_mmap_file
[2026-03-12 13:21:06] -rw-r--r--. 1 boinc boinc     21251 Mar 12 13:21 stderr.txt
[2026-03-12 13:21:06] HITS file was successfully produced:
[2026-03-12 13:21:06] -rw-------. 1 boinc boinc 191119452 Mar 12 13:19 shared/HITS.pool.root.1
[2026-03-12 13:21:06]  *** Contents of shared directory: ***
[2026-03-12 13:21:06] total 619492
[2026-03-12 13:21:06] -rw-r--r--. 2 boinc boinc 441616893 Mar 12 12:00 ATLAS.root_0
[2026-03-12 13:21:06] -rw-r--r--. 2 boinc boinc     15845 Mar 12 12:00 start_atlas.sh
[2026-03-12 13:21:06] -rw-r--r--. 2 boinc boinc    597950 Mar 12 12:00 input.tar.gz
[2026-03-12 13:21:06] -rw-------. 1 boinc boinc 191119452 Mar 12 13:19 HITS.pool.root.1
[2026-03-12 13:21:06] -rw-------. 1 boinc boinc    993280 Mar 12 13:20 result.tar.gz
13:21:08 (2158083): run_atlas exited; CPU time 18388.850344
13:21:08 (2158083): called boinc_finish(0)

</stderr_txt>
]]>

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