Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
19:12:19 (29875): wrapper (7.7.26015): starting
19:12:19 (29875): wrapper: running run_atlas (--nthreads 8)
[2026-03-11 19:12:19] Arguments: --nthreads 8
[2026-03-11 19:12:19] Threads: 8
[2026-03-11 19:12:19] Checking for CVMFS
[2026-03-11 19:12:21] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-11 19:12:21] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-11 19:12:21] Running cvmfs_config stat atlas.cern.ch
[2026-03-11 19:12:22] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-11 19:12:22] 2.11.2.0 23879 123598 130876 157164 2 57 24704622 25165824 899 130560 157 31978142 99.795 26865938 851 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-03-11 19:12:22] CVMFS is ok
[2026-03-11 19:12:22] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-11 19:12:22] Checking for apptainer binary...
[2026-03-11 19:12:22] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-11 19:12:22] Running /usr/bin/apptainer --version
[2026-03-11 19:12:22] apptainer version 1.3.2-1.el7
[2026-03-11 19:12:22] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-11 19:12:30] cg-vwn385.simple-grid.lan
[2026-03-11 19:12:30] apptainer works
[2026-03-11 19:12:30] Set ATHENA_PROC_NUMBER=8
[2026-03-11 19:12:30] Set ATHENA_CORE_NUMBER=8
[2026-03-11 19:12:30] Starting ATLAS job with PandaID=7049529396
[2026-03-11 19:12:30] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/12 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-12 05:10:51]  *** The last 200 lines of the pilot log: ***
[2026-03-12 05:10:51] 2026-03-12 04:09:54,498 | INFO     | total number of processed events: 400 (read)
[2026-03-12 05:10:51] 2026-03-12 04:09:54,500 | INFO     | using path: /var/lib/boinc/slots/12/PanDA_Pilot-7049529396/memory_monitor_summary.json (trf name=prmon)
[2026-03-12 05:10:51] 2026-03-12 04:09:54,501 | INFO     | extracted standard info from prmon json
[2026-03-12 05:10:51] 2026-03-12 04:09:54,501 | INFO     | extracted standard memory fields from prmon json
[2026-03-12 05:10:51] 2026-03-12 04:09:54,501 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-12 05:10:51] 2026-03-12 04:09:54,501 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-12 05:10:51] 2026-03-12 04:09:54,501 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-12 05:10:51] 2026-03-12 04:09:54,513 | INFO     | fitting pss+swap vs Time
[2026-03-12 05:10:51] 2026-03-12 04:09:54,519 | INFO     | sum of square deviations: 59257669200.0
[2026-03-12 05:10:51] 2026-03-12 04:09:54,541 | INFO     | sum of deviations: 453447769329.0
[2026-03-12 05:10:51] 2026-03-12 04:09:54,542 | INFO     | mean x: 1773270979.5
[2026-03-12 05:10:51] 2026-03-12 04:09:54,542 | INFO     | mean y: 2477808.236111111
[2026-03-12 05:10:51] 2026-03-12 04:09:54,542 | INFO     | intersect: -13566833656.854822
[2026-03-12 05:10:51] 2026-03-12 04:09:54,543 | INFO     | chi2: 8.294654238226936
[2026-03-12 05:10:51] 2026-03-12 04:09:54,544 | INFO     | sum of square deviations: 57727854470.0
[2026-03-12 05:10:51] 2026-03-12 04:09:54,561 | INFO     | sum of deviations: 487708066383.0
[2026-03-12 05:10:51] 2026-03-12 04:09:54,562 | INFO     | mean x: 1773270827.0
[2026-03-12 05:10:51] 2026-03-12 04:09:54,562 | INFO     | mean y: 2481196.3029772327
[2026-03-12 05:10:51] 2026-03-12 04:09:54,562 | INFO     | intersect: -14978821922.436565
[2026-03-12 05:10:51] 2026-03-12 04:09:54,563 | INFO     | chi2: 7.545700309664558
[2026-03-12 05:10:51] 2026-03-12 04:09:54,563 | INFO     | current chi2=7.545700309664558 (change=9.029356824914194 %)
[2026-03-12 05:10:51] 2026-03-12 04:09:54,563 | INFO     | right removable region: 570
[2026-03-12 05:10:51] 2026-03-12 04:09:54,564 | INFO     | sum of square deviations: 57727854470.0
[2026-03-12 05:10:51] 2026-03-12 04:09:54,575 | INFO     | sum of deviations: 249463370998.99997
[2026-03-12 05:10:51] 2026-03-12 04:09:54,575 | INFO     | mean x: 1773271132.0
[2026-03-12 05:10:51] 2026-03-12 04:09:54,576 | INFO     | mean y: 2498136.6252189144
[2026-03-12 05:10:51] 2026-03-12 04:09:54,576 | INFO     | intersect: -7660461076.830764
[2026-03-12 05:10:51] 2026-03-12 04:09:54,577 | INFO     | chi2: 3.629629538760935
[2026-03-12 05:10:51] 2026-03-12 04:09:54,577 | INFO     | current chi2=3.629629538760935 (change=56.24134009066538 %)
[2026-03-12 05:10:51] 2026-03-12 04:09:54,578 | INFO     | sum of square deviations: 56224598377.5
[2026-03-12 05:10:51] 2026-03-12 04:09:54,595 | INFO     | sum of deviations: 93283842581.0
[2026-03-12 05:10:51] 2026-03-12 04:09:54,595 | INFO     | mean x: 1773271284.5
[2026-03-12 05:10:51] 2026-03-12 04:09:54,595 | INFO     | mean y: 2513972.0106007066
[2026-03-12 05:10:51] 2026-03-12 04:09:54,596 | INFO     | intersect: -2939571238.559842
[2026-03-12 05:10:51] 2026-03-12 04:09:54,596 | INFO     | chi2: 1.003204371690139
[2026-03-12 05:10:51] 2026-03-12 04:09:54,597 | INFO     | current chi2=1.003204371690139 (change=72.36069519004938 %)
[2026-03-12 05:10:51] 2026-03-12 04:09:54,598 | INFO     | sum of square deviations: 54747668360.0
[2026-03-12 05:10:51] 2026-03-12 04:09:54,608 | INFO     | sum of deviations: 68722396748.00002
[2026-03-12 05:10:51] 2026-03-12 04:09:54,609 | INFO     | mean x: 1773271437.0
[2026-03-12 05:10:51] 2026-03-12 04:09:54,609 | INFO     | mean y: 2516500.7914438504
[2026-03-12 05:10:51] 2026-03-12 04:09:54,609 | INFO     | intersect: -2223394974.2705073
[2026-03-12 05:10:51] 2026-03-12 04:09:54,610 | INFO     | chi2: 0.9271875051270551
[2026-03-12 05:10:51] 2026-03-12 04:09:54,610 | INFO     | current chi2=0.9271875051270551 (change=7.577405831577004 %)
[2026-03-12 05:10:51] 2026-03-12 04:09:54,610 | INFO     | left removable region: 30
[2026-03-12 05:10:51] 2026-03-12 04:09:54,611 | INFO     | sum of square deviations: 48826794555.0
[2026-03-12 05:10:51] 2026-03-12 04:09:54,621 | INFO     | sum of deviations: 55276303723.5
[2026-03-12 05:10:51] 2026-03-12 04:09:54,622 | INFO     | mean x: 1773271711.5
[2026-03-12 05:10:51] 2026-03-12 04:09:54,622 | INFO     | mean y: 2525677.6685185186
[2026-03-12 05:10:51] 2026-03-12 04:09:54,622 | INFO     | intersect: -2004976690.703258
[2026-03-12 05:10:51] 2026-03-12 04:09:54,623 | INFO     | chi2: 0.0024522676220236164
[2026-03-12 05:10:51] 2026-03-12 04:09:54,623 | INFO     | current memory leak: 1.13 B/s (using 540 data points, chi2=0.00)
[2026-03-12 05:10:51] 2026-03-12 04:09:54,624 | INFO     | could have reported an average CPU frequency of 1999 MHz (23 samples)
[2026-03-12 05:10:51] 2026-03-12 04:09:54,624 | INFO     | ..............................
[2026-03-12 05:10:51] 2026-03-12 04:09:54,625 | INFO     | . Timing measurements:
[2026-03-12 05:10:51] 2026-03-12 04:09:54,625 | INFO     | . get job = 0 s
[2026-03-12 05:10:51] 2026-03-12 04:09:54,625 | INFO     | . initial setup = 114 s
[2026-03-12 05:10:51] 2026-03-12 04:09:54,625 | INFO     | . payload setup = 128 s
[2026-03-12 05:10:51] 2026-03-12 04:09:54,625 | INFO     | . stage-in = 0 s
[2026-03-12 05:10:51] 2026-03-12 04:09:54,625 | INFO     | . payload execution = 35255 s
[2026-03-12 05:10:51] 2026-03-12 04:09:54,625 | INFO     | . stage-out = 7 s
[2026-03-12 05:10:51] 2026-03-12 04:09:54,625 | INFO     | . log creation = 1 s
[2026-03-12 05:10:51] 2026-03-12 04:09:54,625 | INFO     | ..............................
[2026-03-12 05:10:51] 2026-03-12 04:09:54,779 | INFO     | 
[2026-03-12 05:10:51] 2026-03-12 04:09:54,780 | INFO     | job summary report
[2026-03-12 05:10:51] 2026-03-12 04:09:54,780 | INFO     | --------------------------------------------------
[2026-03-12 05:10:51] 2026-03-12 04:09:54,780 | INFO     | PanDA job id: 7049529396
[2026-03-12 05:10:51] 2026-03-12 04:09:54,780 | INFO     | task id: 48967067
[2026-03-12 05:10:51] 2026-03-12 04:09:54,780 | INFO     | errors: (none)
[2026-03-12 05:10:51] 2026-03-12 04:09:54,780 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-12 05:10:51] 2026-03-12 04:09:54,780 | INFO     | pilot state: finished 
[2026-03-12 05:10:51] 2026-03-12 04:09:54,780 | INFO     | transexitcode: 0
[2026-03-12 05:10:51] 2026-03-12 04:09:54,780 | INFO     | exeerrorcode: 0
[2026-03-12 05:10:51] 2026-03-12 04:09:54,781 | INFO     | exeerrordiag: 
[2026-03-12 05:10:51] 2026-03-12 04:09:54,781 | INFO     | exitcode: 0
[2026-03-12 05:10:51] 2026-03-12 04:09:54,781 | INFO     | exitmsg: OK
[2026-03-12 05:10:51] 2026-03-12 04:09:54,781 | INFO     | cpuconsumptiontime: 136449 s
[2026-03-12 05:10:51] 2026-03-12 04:09:54,781 | INFO     | nevents: 400
[2026-03-12 05:10:51] 2026-03-12 04:09:54,781 | INFO     | neventsw: 0
[2026-03-12 05:10:51] 2026-03-12 04:09:54,781 | INFO     | pid: 5894
[2026-03-12 05:10:51] 2026-03-12 04:09:54,781 | INFO     | pgrp: 5894
[2026-03-12 05:10:51] 2026-03-12 04:09:54,781 | INFO     | corecount: 8
[2026-03-12 05:10:51] 2026-03-12 04:09:54,781 | INFO     | event service: False
[2026-03-12 05:10:51] 2026-03-12 04:09:54,782 | INFO     | sizes: {0: 2279782, 1: 2280239, 2: 2280299, 12: 2280327, 35387: 2320564, 35388: 2320563, 35397: 2329747, 35400: 2329803, 35402: 2329997}
[2026-03-12 05:10:51] 2026-03-12 04:09:54,782 | INFO     | --------------------------------------------------
[2026-03-12 05:10:51] 2026-03-12 04:09:54,782 | INFO     | 
[2026-03-12 05:10:51] 2026-03-12 04:09:54,782 | INFO     | executing command: ls -lF /var/lib/boinc/slots/12
[2026-03-12 05:10:51] 2026-03-12 04:09:55,296 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-12 05:10:51] 2026-03-12 04:09:55,297 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-12 05:10:51] 2026-03-12 04:09:55,297 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-12 05:10:51] 2026-03-12 04:09:55,297 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-12 05:10:51] 2026-03-12 04:09:55,297 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-12 05:10:51] 2026-03-12 04:09:55,297 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-12 05:10:51] 2026-03-12 04:09:55,297 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-12 05:10:51] 2026-03-12 04:09:55,297 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-12 05:10:51] 2026-03-12 04:09:55,297 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-12 05:10:51] 2026-03-12 04:09:55,297 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-12 05:10:51] 2026-03-12 04:09:55,297 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-12 05:10:51] 2026-03-12 04:09:55,297 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-12 05:10:51] 2026-03-12 04:09:55,297 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-12 05:10:51] 2026-03-12 04:09:55,298 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-12 05:10:51] 2026-03-12 04:09:55,298 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-12 05:10:51] 2026-03-12 04:09:55,298 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-12 05:10:51] 2026-03-12 04:09:55,298 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-12 05:10:51] 2026-03-12 04:09:55,298 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-12 05:10:51] 2026-03-12 04:09:55,298 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-12 05:10:51] 2026-03-12 04:09:55,298 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-12 05:10:51] 2026-03-12 04:09:55,298 | INFO     | job 7049529396 has completed (purged errors)
[2026-03-12 05:10:51] 2026-03-12 04:09:55,299 | INFO     | overall cleanup function is called
[2026-03-12 05:10:51] 2026-03-12 04:09:56,307 | INFO     | --- collectZombieJob: --- 10, [5894]
[2026-03-12 05:10:51] 2026-03-12 04:09:56,308 | INFO     | zombie collector waiting for pid 5894
[2026-03-12 05:10:51] 2026-03-12 04:09:56,308 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-12 05:10:51] 2026-03-12 04:09:56,308 | INFO     | collected zombie processes
[2026-03-12 05:10:51] 2026-03-12 04:09:56,308 | INFO     | will attempt to kill all subprocesses of pid=5894
[2026-03-12 05:10:51] 2026-03-12 04:09:56,432 | INFO     | process IDs to be killed: [5894] (in reverse order)
[2026-03-12 05:10:51] 2026-03-12 04:09:57,259 | WARNING  | found no corresponding commands to process id(s)
[2026-03-12 05:10:51] 2026-03-12 04:09:57,259 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-12 05:10:51] 2026-03-12 04:09:57,262 | INFO     | did not find any defunct processes belonging to 5894
[2026-03-12 05:10:51] 2026-03-12 04:09:57,263 | INFO     | did not find any defunct processes belonging to 5894
[2026-03-12 05:10:51] 2026-03-12 04:09:57,264 | INFO     | ready for new job
[2026-03-12 05:10:51] 2026-03-12 04:09:57,264 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-12 05:10:51] 2026-03-12 04:09:57,272 | INFO     | **************************************
[2026-03-12 05:10:51] 2026-03-12 04:09:57,273 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-12 05:10:51] 2026-03-12 04:09:57,273 | INFO     | **************************************
[2026-03-12 05:10:51] 2026-03-12 04:09:57,273 | INFO     | 
[2026-03-12 05:10:51] 2026-03-12 04:09:57,273 | INFO     | pilot is running in a VM
[2026-03-12 05:10:51] 2026-03-12 04:09:57,274 | INFO     | architecture information:
[2026-03-12 05:10:51] 2026-03-12 04:09:57,281 | INFO     | executing command: cat /etc/os-release
[2026-03-12 05:10:51] 2026-03-12 04:09:57,564 | INFO     | cat /etc/os-release:
[2026-03-12 05:10:51] NAME="CentOS Linux"
[2026-03-12 05:10:51] VERSION="7 (Core)"
[2026-03-12 05:10:51] ID="centos"
[2026-03-12 05:10:51] ID_LIKE="rhel fedora"
[2026-03-12 05:10:51] VERSION_ID="7"
[2026-03-12 05:10:51] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-12 05:10:51] ANSI_COLOR="0;31"
[2026-03-12 05:10:51] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-12 05:10:51] HOME_URL="https://www.centos.org/"
[2026-03-12 05:10:51] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-12 05:10:51] 
[2026-03-12 05:10:51] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-12 05:10:51] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-12 05:10:51] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-12 05:10:51] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-12 05:10:51] 
[2026-03-12 05:10:51] 2026-03-12 04:09:57,564 | INFO     | **************************************
[2026-03-12 05:10:51] 2026-03-12 04:09:58,068 | INFO     | executing command: df -mP /var/lib/boinc/slots/12
[2026-03-12 05:10:51] 2026-03-12 04:09:58,381 | INFO     | sufficient remaining disk space (496673751040 B)
[2026-03-12 05:10:51] 2026-03-12 04:09:58,382 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-12 05:10:51] 2026-03-12 04:09:58,382 | INFO     | current server update state: UPDATING_FINAL
[2026-03-12 05:10:51] 2026-03-12 04:09:58,382 | INFO     | update_server=False
[2026-03-12 05:10:51] 2026-03-12 04:09:58,382 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-12 05:10:51] 2026-03-12 04:09:58,383 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-12 05:10:51] 2026-03-12 04:09:58,398 | INFO     | all job control threads have been joined
[2026-03-12 05:10:51] 2026-03-12 04:09:58,538 | INFO     | all data control threads have been joined
[2026-03-12 05:10:51] 2026-03-12 04:09:58,638 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-12 05:10:51] 2026-03-12 04:09:58,876 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-03-12 05:10:51] 2026-03-12 04:09:58,877 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-03-12 05:10:51] 2026-03-12 04:09:58,877 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-12 05:10:51] 2026-03-12 04:09:58,877 | INFO     | will abort loop
[2026-03-12 05:10:51] 2026-03-12 04:09:59,389 | INFO     | [job] retrieve thread has finished
[2026-03-12 05:10:51] 2026-03-12 04:09:59,404 | INFO     | [job] control thread has finished
[2026-03-12 05:10:51] 2026-03-12 04:09:59,509 | INFO     | [data] copytool_in thread has finished
[2026-03-12 05:10:51] 2026-03-12 04:09:59,544 | INFO     | [data] control thread has finished
[2026-03-12 05:10:51] 2026-03-12 04:09:59,554 | INFO     | [payload] execute_payloads thread has finished
[2026-03-12 05:10:51] 2026-03-12 04:09:59,621 | INFO     | all payload control threads have been joined
[2026-03-12 05:10:51] 2026-03-12 04:09:59,727 | INFO     | [payload] validate_post thread has finished
[2026-03-12 05:10:51] 2026-03-12 04:09:59,795 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-12 05:10:51] 2026-03-12 04:09:59,882 | INFO     | [job] job monitor thread has finished
[2026-03-12 05:10:51] 2026-03-12 04:10:00,270 | INFO     | [job] validate thread has finished
[2026-03-12 05:10:51] 2026-03-12 04:10:00,313 | INFO     | [job] create_data_payload thread has finished
[2026-03-12 05:10:51] 2026-03-12 04:10:00,383 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-12 05:10:51] 2026-03-12 04:10:00,390 | INFO     | [data] copytool_out thread has finished
[2026-03-12 05:10:51] 2026-03-12 04:10:00,464 | INFO     | [payload] failed_post thread has finished
[2026-03-12 05:10:51] 2026-03-12 04:10:00,624 | INFO     | [payload] validate_pre thread has finished
[2026-03-12 05:10:51] 2026-03-12 04:10:00,627 | INFO     | [payload] control thread has finished
[2026-03-12 05:10:51] 2026-03-12 04:10:00,801 | INFO     | [job] queue monitor thread has finished
[2026-03-12 05:10:51] 2026-03-12 04:10:02,647 | INFO     | [data] queue_monitor thread has finished
[2026-03-12 05:10:51] 2026-03-12 04:10:26,842 | INFO     | PID=1440 has CPU usage=3.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-03-12 05:10:51] 2026-03-12 04:10:26,842 | INFO     | .. there are 2 such processes running
[2026-03-12 05:10:51] 2026-03-12 04:10:26,843 | INFO     | found 0 job(s) in 20 queues
[2026-03-12 05:10:51] 2026-03-12 04:10:26,843 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-12 05:10:51] 2026-03-12 04:10:26,843 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-12 05:10:51] 2026-03-12 04:10:41,156 | INFO     | [monitor] cgroup control has ended
[2026-03-12 05:10:51] 2026-03-12 04:10:41,690 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140424739415872)>', '<ExcThread(monitor, started 140424073172736)>']
[2026-03-12 05:10:51] 2026-03-12 04:10:41,933 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-12 05:10:51] 2026-03-12 04:10:41,934 | INFO     | [monitor] control thread has ended
[2026-03-12 05:10:51] 2026-03-12 04:10:46,716 | INFO     | all workflow threads have been joined
[2026-03-12 05:10:51] 2026-03-12 04:10:46,717 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-12 05:10:51] 2026-03-12 04:10:46,717 | INFO     | traces error code: 0
[2026-03-12 05:10:51] 2026-03-12 04:10:46,717 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-12 05:10:51] 2026-03-12 04:10:47,116 [wrapper] ==== pilot stdout END ====
[2026-03-12 05:10:51] 2026-03-12 04:10:47,216 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-12 05:10:51] 2026-03-12 04:10:47,355 [wrapper] pilotpid: 1440
[2026-03-12 05:10:51] 2026-03-12 04:10:47,453 [wrapper] Pilot exit status: 0
[2026-03-12 05:10:51] 2026-03-12 04:10:47,780 [wrapper] pandaids: 7049529396
[2026-03-12 05:10:51] 2026-03-12 04:10:49,007 [wrapper] cleanup supervisor_pilot 14062 1441
[2026-03-12 05:10:51] 2026-03-12 04:10:49,063 [wrapper] Test setup, not cleaning
[2026-03-12 05:10:51] 2026-03-12 04:10:49,135 [wrapper] apfmon messages muted
[2026-03-12 05:10:51] 2026-03-12 04:10:49,232 [wrapper] ==== wrapper stdout END ====
[2026-03-12 05:10:51] 2026-03-12 04:10:49,365 [wrapper] ==== wrapper stderr END ====
[2026-03-12 05:10:51]  *** Error codes and diagnostics ***
[2026-03-12 05:10:51]     "exeErrorCode": 0,
[2026-03-12 05:10:51]     "exeErrorDiag": "",
[2026-03-12 05:10:51]     "pilotErrorCode": 0,
[2026-03-12 05:10:51]     "pilotErrorDiag": "",
[2026-03-12 05:10:51]  *** Listing of results directory ***
[2026-03-12 05:10:51] total 519756
[2026-03-12 05:10:51] -rw-r--r--. 1 boinc boinc    585013 Mar 11 06:14 pilot3.tar.gz
[2026-03-12 05:10:51] -rwx------. 1 boinc boinc     36322 Mar 11 06:14 runpilot2-wrapper.sh
[2026-03-12 05:10:51] -rw-r--r--. 1 boinc boinc      5111 Mar 11 06:14 queuedata.json
[2026-03-12 05:10:51] -rw-r--r--. 1 boinc boinc       100 Mar 11 19:12 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-12 05:10:51] -rwxr-xr-x. 1 boinc boinc      7986 Mar 11 19:12 run_atlas
[2026-03-12 05:10:51] -rw-r--r--. 1 boinc boinc       105 Mar 11 19:12 job.xml
[2026-03-12 05:10:51] -rw-r--r--. 1 boinc boinc      6392 Mar 11 19:12 init_data.xml
[2026-03-12 05:10:51] -rw-r--r--. 2 boinc boinc 238007065 Mar 11 19:12 EVNT.48967065._000013.pool.root.1
[2026-03-12 05:10:51] -rw-r--r--. 2 boinc boinc     15845 Mar 11 19:12 start_atlas.sh
[2026-03-12 05:10:51] drwxrwx--x. 2 boinc boinc        68 Mar 11 19:12 shared
[2026-03-12 05:10:51] -rw-r--r--. 2 boinc boinc    597540 Mar 11 19:12 input.tar.gz
[2026-03-12 05:10:51] -rw-r--r--. 1 boinc boinc         0 Mar 11 19:12 boinc_lockfile
[2026-03-12 05:10:51] -rw-r--r--. 1 boinc boinc      2609 Mar 11 19:12 pandaJob.out
[2026-03-12 05:10:51] -rw-------. 1 boinc boinc       415 Mar 11 19:19 workernode_map.json
[2026-03-12 05:10:51] -rw-------. 1 boinc boinc   1006243 Mar 11 19:19 agis_schedconf.cvmfs.json
[2026-03-12 05:10:51] drwx------. 5 boinc boinc      4096 Mar 11 19:19 pilot3
[2026-03-12 05:10:51] -rw-------. 1 boinc boinc 278964889 Mar 12 05:07 HITS.48967067._000311.pool.root.1
[2026-03-12 05:10:51] -rw-r--r--. 1 boinc boinc       532 Mar 12 05:08 boinc_task_state.xml
[2026-03-12 05:10:51] -rw-------. 1 boinc boinc      1009 Mar 12 05:09 memory_monitor_summary.json
[2026-03-12 05:10:51] -rw-------. 1 boinc boinc   1511578 Mar 12 05:09 agis_ddmendpoints.agis.ALL.json
[2026-03-12 05:10:51] -rw-------. 1 boinc boinc    738976 Mar 12 05:09 log.48967067._000311.job.log.tgz.1
[2026-03-12 05:10:51] -rw-------. 1 boinc boinc      6311 Mar 12 05:09 heartbeat.json
[2026-03-12 05:10:51] -rw-r--r--. 1 boinc boinc      8192 Mar 12 05:10 boinc_mmap_file
[2026-03-12 05:10:51] -rw-r--r--. 1 boinc boinc        29 Mar 12 05:10 wrapper_checkpoint.txt
[2026-03-12 05:10:51] -rw-------. 1 boinc boinc        95 Mar 12 05:10 pilot_heartbeat.json
[2026-03-12 05:10:51] -rw-------. 1 boinc boinc      5066 Mar 12 05:10 pilotlog.txt
[2026-03-12 05:10:51] -rw-------. 1 boinc boinc   4927611 Mar 12 05:10 log.48967067._000311.job.log.1
[2026-03-12 05:10:51] -rw-------. 1 boinc boinc       357 Mar 12 05:10 output.list
[2026-03-12 05:10:51] -rw-r--r--. 1 boinc boinc       620 Mar 12 05:10 runtime_log
[2026-03-12 05:10:51] -rw-------. 1 boinc boinc   5683200 Mar 12 05:10 result.tar.gz
[2026-03-12 05:10:51] -rw-r--r--. 1 boinc boinc      8832 Mar 12 05:10 runtime_log.err
[2026-03-12 05:10:51] -rw-------. 1 boinc boinc       658 Mar 12 05:10 CHlNDms4QK9n9Rq4apOajLDm4fhM0noT9bVooX4SDmukfLDm0G1z9m.diag
[2026-03-12 05:10:51] -rw-r--r--. 1 boinc boinc     20734 Mar 12 05:10 stderr.txt
[2026-03-12 05:10:51] HITS file was successfully produced:
[2026-03-12 05:10:51] -rw-------. 1 boinc boinc 278964889 Mar 12 05:07 shared/HITS.pool.root.1
[2026-03-12 05:10:51]  *** Contents of shared directory: ***
[2026-03-12 05:10:51] total 511012
[2026-03-12 05:10:51] -rw-r--r--. 2 boinc boinc 238007065 Mar 11 19:12 ATLAS.root_0
[2026-03-12 05:10:51] -rw-r--r--. 2 boinc boinc     15845 Mar 11 19:12 start_atlas.sh
[2026-03-12 05:10:51] -rw-r--r--. 2 boinc boinc    597540 Mar 11 19:12 input.tar.gz
[2026-03-12 05:10:51] -rw-------. 1 boinc boinc 278964889 Mar 12 05:07 HITS.pool.root.1
[2026-03-12 05:10:51] -rw-------. 1 boinc boinc   5683200 Mar 12 05:10 result.tar.gz
05:10:53 (29875): run_atlas exited; CPU time 136855.795051
05:10:53 (29875): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN