Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
01:58:41 (3322710): wrapper (7.7.26015): starting
01:58:41 (3322710): wrapper: running run_atlas (--nthreads 3)
[2026-03-12 01:58:41] Arguments: --nthreads 3
[2026-03-12 01:58:41] Threads: 3
[2026-03-12 01:58:41] Checking for CVMFS
[2026-03-12 01:58:41] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-12 01:58:42] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-12 01:58:42] Running cvmfs_config stat atlas.cern.ch
[2026-03-12 01:58:42] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-12 01:58:42] 2.9.2.0 3281840 334 57756 157177 2 50 35112406 36864001 0 130560 0 115845 99.968 12390 12617 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-12 01:58:42] CVMFS is ok
[2026-03-12 01:58:42] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-12 01:58:42] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-12 01:58:42] Further information can be found at the LHC@home message board.
[2026-03-12 01:58:42] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-12 01:58:42] Checking for apptainer binary...
[2026-03-12 01:58:42] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-12 01:58:42] Running /usr/bin/apptainer --version
[2026-03-12 01:58:42] apptainer version 1.4.1-1.1
[2026-03-12 01:58:42] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-12 01:58:42] thA389a
[2026-03-12 01:58:42] apptainer works
[2026-03-12 01:58:42] Set ATHENA_PROC_NUMBER=3
[2026-03-12 01:58:42] Set ATHENA_CORE_NUMBER=3
[2026-03-12 01:58:43] Starting ATLAS job with PandaID=7038560559
[2026-03-12 01:58:43] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-12 03:24:26]  *** The last 200 lines of the pilot log: ***
[2026-03-12 03:24:26] 2026-03-12 02:23:55,391 | INFO     | job 7038560559 has completed (purged errors)
[2026-03-12 03:24:26] 2026-03-12 02:23:55,391 | INFO     | overall cleanup function is called
[2026-03-12 03:24:26] 2026-03-12 02:23:56,397 | INFO     | --- collectZombieJob: --- 10, [3331175]
[2026-03-12 03:24:26] 2026-03-12 02:23:56,397 | INFO     | zombie collector waiting for pid 3331175
[2026-03-12 03:24:26] 2026-03-12 02:23:56,398 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-12 03:24:26] 2026-03-12 02:23:56,398 | INFO     | collected zombie processes
[2026-03-12 03:24:26] 2026-03-12 02:23:56,398 | INFO     | will attempt to kill all subprocesses of pid=3331175
[2026-03-12 03:24:26] 2026-03-12 02:23:56,438 | INFO     | process IDs to be killed: [3331175] (in reverse order)
[2026-03-12 03:24:26] 2026-03-12 02:23:56,464 | WARNING  | found no corresponding commands to process id(s)
[2026-03-12 03:24:26] 2026-03-12 02:23:56,465 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-12 03:24:26] 2026-03-12 02:23:56,466 | INFO     | did not find any defunct processes belonging to 3331175
[2026-03-12 03:24:26] 2026-03-12 02:23:56,467 | INFO     | did not find any defunct processes belonging to 3331175
[2026-03-12 03:24:26] 2026-03-12 02:23:56,467 | INFO     | ready for new job
[2026-03-12 03:24:26] 2026-03-12 02:23:56,467 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-12 03:24:26] 2026-03-12 02:23:56,467 | INFO     | **************************************
[2026-03-12 03:24:26] 2026-03-12 02:23:56,467 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-12 03:24:26] 2026-03-12 02:23:56,467 | INFO     | **************************************
[2026-03-12 03:24:26] 2026-03-12 02:23:56,468 | INFO     | 
[2026-03-12 03:24:26] 2026-03-12 02:23:56,468 | INFO     | architecture information:
[2026-03-12 03:24:26] 2026-03-12 02:23:56,468 | INFO     | executing command: cat /etc/os-release
[2026-03-12 03:24:26] 2026-03-12 02:23:56,478 | INFO     | cat /etc/os-release:
[2026-03-12 03:24:26] NAME="CentOS Linux"
[2026-03-12 03:24:26] VERSION="7 (Core)"
[2026-03-12 03:24:26] ID="centos"
[2026-03-12 03:24:26] ID_LIKE="rhel fedora"
[2026-03-12 03:24:26] VERSION_ID="7"
[2026-03-12 03:24:26] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-12 03:24:26] ANSI_COLOR="0;31"
[2026-03-12 03:24:26] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-12 03:24:26] HOME_URL="https://www.centos.org/"
[2026-03-12 03:24:26] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-12 03:24:26] 
[2026-03-12 03:24:26] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-12 03:24:26] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-12 03:24:26] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-12 03:24:26] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-12 03:24:26] 
[2026-03-12 03:24:26] 2026-03-12 02:23:56,478 | INFO     | **************************************
[2026-03-12 03:24:26] 2026-03-12 02:23:56,981 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-12 03:24:26] 2026-03-12 02:23:56,994 | INFO     | sufficient remaining disk space (224208617472 B)
[2026-03-12 03:24:26] 2026-03-12 02:23:56,994 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-12 03:24:26] 2026-03-12 02:23:56,994 | INFO     | current server update state: UPDATING_FINAL
[2026-03-12 03:24:26] 2026-03-12 02:23:56,995 | INFO     | update_server=False
[2026-03-12 03:24:26] 2026-03-12 02:23:56,995 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-12 03:24:26] 2026-03-12 02:23:56,995 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-12 03:24:26] 2026-03-12 02:23:56,995 | INFO     | aborting loop
[2026-03-12 03:24:26] 2026-03-12 02:23:56,995 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-12 03:24:26] 2026-03-12 02:23:57,375 | INFO     | all payload control threads have been joined
[2026-03-12 03:24:26] 2026-03-12 02:23:57,448 | INFO     | all job control threads have been joined
[2026-03-12 03:24:26] 2026-03-12 02:23:57,546 | INFO     | all data control threads have been joined
[2026-03-12 03:24:26] 2026-03-12 02:23:58,000 | INFO     | [job] queue monitor thread has finished
[2026-03-12 03:24:26] 2026-03-12 02:23:58,000 | INFO     | [job] job monitor thread has finished
[2026-03-12 03:24:26] 2026-03-12 02:23:58,000 | INFO     | [job] retrieve thread has finished
[2026-03-12 03:24:26] 2026-03-12 02:23:58,225 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-12 03:24:26] 2026-03-12 02:23:58,369 | INFO     | [payload] failed_post thread has finished
[2026-03-12 03:24:26] 2026-03-12 02:23:58,381 | INFO     | [payload] control thread has finished
[2026-03-12 03:24:26] 2026-03-12 02:23:58,385 | INFO     | [payload] execute_payloads thread has finished
[2026-03-12 03:24:26] 2026-03-12 02:23:58,454 | INFO     | [job] control thread has finished
[2026-03-12 03:24:26] 2026-03-12 02:23:58,552 | INFO     | [data] control thread has finished
[2026-03-12 03:24:26] 2026-03-12 02:23:58,921 | INFO     | [payload] validate_post thread has finished
[2026-03-12 03:24:26] 2026-03-12 02:23:59,062 | INFO     | [payload] validate_pre thread has finished
[2026-03-12 03:24:26] 2026-03-12 02:23:59,101 | INFO     | [job] create_data_payload thread has finished
[2026-03-12 03:24:26] 2026-03-12 02:23:59,126 | INFO     | [job] validate thread has finished
[2026-03-12 03:24:26] 2026-03-12 02:23:59,349 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-12 03:24:26] 2026-03-12 02:23:59,452 | INFO     | [data] copytool_in thread has finished
[2026-03-12 03:24:26] 2026-03-12 02:24:00,232 | INFO     | [data] copytool_out thread has finished
[2026-03-12 03:24:26] 2026-03-12 02:24:03,355 | INFO     | [data] queue_monitor thread has finished
[2026-03-12 03:24:26] 2026-03-12 02:24:05,149 | INFO     | [monitor] cgroup control has ended
[2026-03-12 03:24:26] 2026-03-12 02:24:07,391 | INFO     | job.realtimelogging is not enabled
[2026-03-12 03:24:26] 2026-03-12 02:24:08,396 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-12 03:24:26] 2026-03-12 02:24:08,727 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140440628553536)>', '<ExcThread(monitor, started 140439969580800)>']
[2026-03-12 03:24:26] 2026-03-12 02:24:13,730 | INFO     | all workflow threads have been joined
[2026-03-12 03:24:26] 2026-03-12 02:24:13,730 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-12 03:24:26] 2026-03-12 02:24:13,731 | INFO     | traces error code: 0
[2026-03-12 03:24:26] 2026-03-12 02:24:13,731 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-12 03:24:26] 2026-03-12 02:24:26,478 | INFO     | PID=3326748 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-12 03:24:26] 2026-03-12 02:24:26,479 | INFO     | found 0 job(s) in 20 queues
[2026-03-12 03:24:26] 2026-03-12 02:24:26,479 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-12 03:24:26] 2026-03-12 02:24:26,479 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-12 03:24:26] 2026-03-12 02:24:26,479 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-12 03:24:26] 2026-03-12 02:24:26,479 | INFO     | [monitor] control thread has ended
[2026-03-12 03:24:26] 2026-03-12 02:24:26,524 [wrapper] ==== pilot stdout END ====
[2026-03-12 03:24:26] 2026-03-12 02:24:26,528 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-12 03:24:26] 2026-03-12 02:24:26,531 [wrapper] pilotpid: 3326748
[2026-03-12 03:24:26] 2026-03-12 02:24:26,534 [wrapper] Pilot exit status: 0
[2026-03-12 03:24:26] 2026-03-12 02:24:26,542 [wrapper] pandaids: 7038560559
[2026-03-12 03:24:26] 2026-03-12 02:24:26,559 [wrapper] cleanup supervisor_pilot 3336488 3326749
[2026-03-12 03:24:26] 2026-03-12 02:24:26,562 [wrapper] Test setup, not cleaning
[2026-03-12 03:24:26] 2026-03-12 02:24:26,565 [wrapper] apfmon messages muted
[2026-03-12 03:24:26] 2026-03-12 02:24:26,568 [wrapper] ==== wrapper stdout END ====
[2026-03-12 03:24:26] 2026-03-12 02:24:26,571 [wrapper] ==== wrapper stderr END ====
[2026-03-12 03:24:26]  *** Error codes and diagnostics ***
[2026-03-12 03:24:26]     "exeErrorCode": 0,
[2026-03-12 03:24:26]     "exeErrorDiag": "",
[2026-03-12 03:24:26]     "pilotErrorCode": 0,
[2026-03-12 03:24:26]     "pilotErrorDiag": "",
[2026-03-12 03:24:26]  *** Listing of results directory ***
[2026-03-12 03:24:26] total 620336
[2026-03-12 03:24:26] -rw-r--r-- 1 boinc boinc    584627 Mar  5 04:43 pilot3.tar.gz
[2026-03-12 03:24:26] -rwx------ 1 boinc boinc     36322 Mar  5 04:44 runpilot2-wrapper.sh
[2026-03-12 03:24:26] -rw-r--r-- 1 boinc boinc      5111 Mar  5 04:45 queuedata.json
[2026-03-12 03:24:26] -rw-r--r-- 1 boinc boinc       100 Mar 12 01:58 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-12 03:24:26] -rwxr-xr-x 1 boinc boinc      7986 Mar 12 01:58 run_atlas
[2026-03-12 03:24:26] -rw-r--r-- 1 boinc boinc       105 Mar 12 01:58 job.xml
[2026-03-12 03:24:26] -rw-r--r-- 2 boinc boinc 443279996 Mar 12 01:58 EVNT.46701403._002126.pool.root.1
[2026-03-12 03:24:26] drwxrwx--x 2 boinc boinc      4096 Mar 12 01:58 shared
[2026-03-12 03:24:26] -rw-r--r-- 2 boinc boinc    597948 Mar 12 01:58 input.tar.gz
[2026-03-12 03:24:26] -rw-r--r-- 2 boinc boinc     15845 Mar 12 01:58 start_atlas.sh
[2026-03-12 03:24:26] -rw-r--r-- 1 boinc boinc         0 Mar 12 01:58 boinc_setup_complete
[2026-03-12 03:24:26] -rw-r--r-- 1 boinc boinc      6197 Mar 12 01:58 init_data.xml
[2026-03-12 03:24:26] -rw-r--r-- 1 boinc boinc         0 Mar 12 01:58 boinc_lockfile
[2026-03-12 03:24:26] -rw-r--r-- 1 boinc boinc      2569 Mar 12 01:58 pandaJob.out
[2026-03-12 03:24:26] -rw------- 1 boinc boinc   1006227 Mar 12 01:58 agis_schedconf.cvmfs.json
[2026-03-12 03:24:26] -rw------- 1 boinc boinc   1511578 Mar 12 01:58 agis_ddmendpoints.agis.ALL.json
[2026-03-12 03:24:26] -rw------- 1 boinc boinc       420 Mar 12 01:58 workernode_map.json
[2026-03-12 03:24:26] drwx------ 5 boinc boinc      4096 Mar 12 01:58 pilot3
[2026-03-12 03:24:26] -rw------- 1 boinc boinc 186013964 Mar 12 03:23 HITS.48955015._004071.pool.root.1
[2026-03-12 03:24:26] -rw-r--r-- 1 boinc boinc       530 Mar 12 03:23 boinc_task_state.xml
[2026-03-12 03:24:26] -rw------- 1 boinc boinc      1020 Mar 12 03:23 memory_monitor_summary.json
[2026-03-12 03:24:26] -rw------- 1 boinc boinc    263622 Mar 12 03:23 log.48955015._004071.job.log.tgz.1
[2026-03-12 03:24:26] -rw------- 1 boinc boinc      6308 Mar 12 03:23 heartbeat.json
[2026-03-12 03:24:26] -rw-r--r-- 1 boinc boinc        27 Mar 12 03:24 wrapper_checkpoint.txt
[2026-03-12 03:24:26] -rw-r--r-- 1 boinc boinc      8192 Mar 12 03:24 boinc_mmap_file
[2026-03-12 03:24:26] -rw------- 1 boinc boinc       747 Mar 12 03:24 pilotlog.txt
[2026-03-12 03:24:26] -rw------- 1 boinc boinc        95 Mar 12 03:24 pilot_heartbeat.json
[2026-03-12 03:24:26] -rw------- 1 boinc boinc    745255 Mar 12 03:24 log.48955015._004071.job.log.1
[2026-03-12 03:24:26] -rw------- 1 boinc boinc       357 Mar 12 03:24 output.list
[2026-03-12 03:24:26] -rw-r--r-- 1 boinc boinc       620 Mar 12 03:24 runtime_log
[2026-03-12 03:24:26] -rw------- 1 boinc boinc   1024000 Mar 12 03:24 result.tar.gz
[2026-03-12 03:24:26] -rw-r--r-- 1 boinc boinc      8901 Mar 12 03:24 runtime_log.err
[2026-03-12 03:24:26] -rw------- 1 boinc boinc       658 Mar 12 03:24 dGjLDmxoEI9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDm8lMLDmgkTjtn.diag
[2026-03-12 03:24:26] -rw-r--r-- 1 boinc boinc     10901 Mar 12 03:24 stderr.txt
[2026-03-12 03:24:26] HITS file was successfully produced:
[2026-03-12 03:24:26] -rw------- 1 boinc boinc 186013964 Mar 12 03:23 shared/HITS.pool.root.1
[2026-03-12 03:24:26]  *** Contents of shared directory: ***
[2026-03-12 03:24:26] total 616152
[2026-03-12 03:24:26] -rw-r--r-- 2 boinc boinc 443279996 Mar 12 01:58 ATLAS.root_0
[2026-03-12 03:24:26] -rw-r--r-- 2 boinc boinc    597948 Mar 12 01:58 input.tar.gz
[2026-03-12 03:24:26] -rw-r--r-- 2 boinc boinc     15845 Mar 12 01:58 start_atlas.sh
[2026-03-12 03:24:26] -rw------- 1 boinc boinc 186013964 Mar 12 03:23 HITS.pool.root.1
[2026-03-12 03:24:26] -rw------- 1 boinc boinc   1024000 Mar 12 03:24 result.tar.gz
03:24:28 (3322710): run_atlas exited; CPU time 14504.304919
03:24:28 (3322710): called boinc_finish(0)

</stderr_txt>
]]>

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