Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
14:18:23 (879318): wrapper (7.7.26015): starting
14:18:23 (879318): wrapper: running run_atlas (--nthreads 4)
[2026-03-12 14:18:23] Arguments: --nthreads 4
[2026-03-12 14:18:23] Threads: 4
[2026-03-12 14:18:23] Checking for CVMFS
[2026-03-12 14:18:23] No cvmfs_config command found, will try listing directly
[2026-03-12 14:18:23] CVMFS is ok
[2026-03-12 14:18:23] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-12 14:18:23] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-12 14:18:23] Further information can be found at the LHC@home message board.
[2026-03-12 14:18:23] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-12 14:18:23] Checking for apptainer binary...
[2026-03-12 14:18:23] which: no apptainer in ((null))
[2026-03-12 14:18:23] apptainer is not installed, using version from CVMFS
[2026-03-12 14:18:23] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-12 14:18:23] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot100/slots/1/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut22.grid.cesnet.cz
[2026-03-12 14:18:23] apptainer works
[2026-03-12 14:18:23] Set ATHENA_PROC_NUMBER=4
[2026-03-12 14:18:23] Set ATHENA_CORE_NUMBER=4
[2026-03-12 14:18:23] Starting ATLAS job with PandaID=7038555602
[2026-03-12 14:18:23] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot100/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-12 15:39:10]  *** The last 200 lines of the pilot log: ***
[2026-03-12 15:39:10]  guid=bfb375f4-02dc-48c5-8385-7664538853c2
[2026-03-12 15:39:10]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-03-12 15:39:10]  is_altstaged=None
[2026-03-12 15:39:10]  is_tar=False
[2026-03-12 15:39:10]  lfn=log.48955015._003387.job.log.tgz.1
[2026-03-12 15:39:10]  mtime=0
[2026-03-12 15:39:10]  protocol_id=None
[2026-03-12 15:39:10]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-03-12 15:39:10]  replicas=None
[2026-03-12 15:39:10]  scope=mc23_13p6TeV
[2026-03-12 15:39:10]  status=None
[2026-03-12 15:39:10]  status_code=0
[2026-03-12 15:39:10]  storage_token=
[2026-03-12 15:39:10]  surl=/var/lib/boinc/var/slot100/slots/1/PanDA_Pilot-7038555602/log.48955015._003387.job.log.tgz.1
[2026-03-12 15:39:10]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/33/88/log.48955015._003387.job.log.tgz.1
[2026-03-12 15:39:10]  workdir=None
[2026-03-12 15:39:10] ]
[2026-03-12 15:39:10] 2026-03-12 14:37:41,429 | INFO     | transferring file log.48955015._003387.job.log.tgz.1 from /var/lib/boinc/var/slot100/slots/1/PanDA_Pilot-7038555602/log.48955015._003387.job.log.tgz.1 to /var/lib/
[2026-03-12 15:39:10] 2026-03-12 14:37:41,429 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/var/slot100/slots/1/PanDA_Pilot-7038555602/log.48955015._003387.job.log.tgz.1 /var/lib/boinc/var/slot100/slots/1/
[2026-03-12 15:39:10] 2026-03-12 14:37:41,444 | INFO     | adding to output.list: log.48955015._003387.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/33/88/log.48955015._003387.job.log.tg
[2026-03-12 15:39:10] 2026-03-12 14:37:41,445 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-12 15:39:10] 2026-03-12 14:37:41,445 | INFO     | summary of transferred files:
[2026-03-12 15:39:10] 2026-03-12 14:37:41,445 | INFO     |  -- lfn=log.48955015._003387.job.log.tgz.1, status_code=0, status=transferred
[2026-03-12 15:39:10] 2026-03-12 14:37:41,445 | INFO     | stage-out finished correctly
[2026-03-12 15:39:10] 2026-03-12 14:37:42,163 | INFO     | time since job start (4746s) is within the limit (349056.0s)
[2026-03-12 15:39:10] 2026-03-12 14:37:43,442 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-12 15:39:10] 2026-03-12 14:37:43,878 | INFO     | monitor loop #344: job 0:7038555602 is in state 'finished'
[2026-03-12 15:39:10] 2026-03-12 14:37:43,878 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-03-12 15:39:10] 2026-03-12 14:37:44,169 | INFO     | time since job start (4748s) is within the limit (349056.0s)
[2026-03-12 15:39:10] 2026-03-12 14:37:44,496 | INFO     | job 7038555602 has state=finished
[2026-03-12 15:39:10] 2026-03-12 14:37:44,496 | INFO     | preparing for final server update for job 7038555602 in state='finished'
[2026-03-12 15:39:10] 2026-03-12 14:37:44,496 | INFO     | reading metadata from: /var/lib/boinc/var/slot100/slots/1/PanDA_Pilot-7038555602/jobReport.json
[2026-03-12 15:39:10] 2026-03-12 14:37:44,498 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot100/slots/1/workernode_map.json
[2026-03-12 15:39:10] 2026-03-12 14:37:44,498 | INFO     | this job has now completed (state=finished)
[2026-03-12 15:39:10] 2026-03-12 14:37:44,498 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-12 15:39:10] 2026-03-12 14:37:44,498 | INFO     | log transfer has been attempted: DONE
[2026-03-12 15:39:10] 2026-03-12 14:37:44,499 | INFO     | job 7038555602 has finished - writing final server update
[2026-03-12 15:39:10] 2026-03-12 14:37:44,499 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_1112936/.job.ad'
[2026-03-12 15:39:10] 2026-03-12 14:37:44,499 | INFO     | total number of processed events: 400 (read)
[2026-03-12 15:39:10] 2026-03-12 14:37:44,518 | INFO     | using path: /var/lib/boinc/var/slot100/slots/1/PanDA_Pilot-7038555602/memory_monitor_summary.json (trf name=prmon)
[2026-03-12 15:39:10] 2026-03-12 14:37:44,518 | INFO     | extracted standard info from prmon json
[2026-03-12 15:39:10] 2026-03-12 14:37:44,518 | INFO     | extracted standard memory fields from prmon json
[2026-03-12 15:39:10] 2026-03-12 14:37:44,518 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-12 15:39:10] 2026-03-12 14:37:44,518 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-12 15:39:10] 2026-03-12 14:37:44,519 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-12 15:39:10] 2026-03-12 14:37:44,520 | INFO     | fitting pss+swap vs Time
[2026-03-12 15:39:10] 2026-03-12 14:37:44,520 | INFO     | sum of square deviations: 110960220.0
[2026-03-12 15:39:10] 2026-03-12 14:37:44,520 | INFO     | sum of deviations: -1273569224.0
[2026-03-12 15:39:10] 2026-03-12 14:37:44,520 | INFO     | mean x: 1773323977.0
[2026-03-12 15:39:10] 2026-03-12 14:37:44,520 | INFO     | mean y: 2358640.9014084507
[2026-03-12 15:39:10] 2026-03-12 14:37:44,520 | INFO     | intersect: 20356056941.864437
[2026-03-12 15:39:10] 2026-03-12 14:37:44,520 | INFO     | chi2: 0.00029277329065652107
[2026-03-12 15:39:10] 2026-03-12 14:37:44,520 | INFO     | current memory leak: -11.48 B/s (using 71 data points, chi2=0.00)
[2026-03-12 15:39:10] 2026-03-12 14:37:44,521 | INFO     | could have reported an average CPU frequency of 3596 MHz (6 samples)
[2026-03-12 15:39:10] 2026-03-12 14:37:44,521 | INFO     | ..............................
[2026-03-12 15:39:10] 2026-03-12 14:37:44,521 | INFO     | . Timing measurements:
[2026-03-12 15:39:10] 2026-03-12 14:37:44,521 | INFO     | . get job = 0 s
[2026-03-12 15:39:10] 2026-03-12 14:37:44,521 | INFO     | . initial setup = 5 s
[2026-03-12 15:39:10] 2026-03-12 14:37:44,521 | INFO     | . payload setup = 5 s
[2026-03-12 15:39:10] 2026-03-12 14:37:44,521 | INFO     | . stage-in = 0 s
[2026-03-12 15:39:10] 2026-03-12 14:37:44,521 | INFO     | . payload execution = 4723 s
[2026-03-12 15:39:10] 2026-03-12 14:37:44,521 | INFO     | . stage-out = 0 s
[2026-03-12 15:39:10] 2026-03-12 14:37:44,521 | INFO     | . log creation = 0 s
[2026-03-12 15:39:10] 2026-03-12 14:37:44,521 | INFO     | ..............................
[2026-03-12 15:39:10] 2026-03-12 14:37:44,573 | INFO     | 
[2026-03-12 15:39:10] 2026-03-12 14:37:44,574 | INFO     | job summary report
[2026-03-12 15:39:10] 2026-03-12 14:37:44,574 | INFO     | --------------------------------------------------
[2026-03-12 15:39:10] 2026-03-12 14:37:44,574 | INFO     | PanDA job id: 7038555602
[2026-03-12 15:39:10] 2026-03-12 14:37:44,574 | INFO     | task id: 48955015
[2026-03-12 15:39:10] 2026-03-12 14:37:44,574 | INFO     | errors: (none)
[2026-03-12 15:39:10] 2026-03-12 14:37:44,574 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-12 15:39:10] 2026-03-12 14:37:44,574 | INFO     | pilot state: finished 
[2026-03-12 15:39:10] 2026-03-12 14:37:44,574 | INFO     | transexitcode: 0
[2026-03-12 15:39:10] 2026-03-12 14:37:44,574 | INFO     | exeerrorcode: 0
[2026-03-12 15:39:10] 2026-03-12 14:37:44,574 | INFO     | exeerrordiag: 
[2026-03-12 15:39:10] 2026-03-12 14:37:44,574 | INFO     | exitcode: 0
[2026-03-12 15:39:10] 2026-03-12 14:37:44,574 | INFO     | exitmsg: OK
[2026-03-12 15:39:10] 2026-03-12 14:37:44,574 | INFO     | cpuconsumptiontime: 18211 s
[2026-03-12 15:39:10] 2026-03-12 14:37:44,574 | INFO     | nevents: 400
[2026-03-12 15:39:10] 2026-03-12 14:37:44,574 | INFO     | neventsw: 0
[2026-03-12 15:39:10] 2026-03-12 14:37:44,574 | INFO     | pid: 890374
[2026-03-12 15:39:10] 2026-03-12 14:37:44,574 | INFO     | pgrp: 890374
[2026-03-12 15:39:10] 2026-03-12 14:37:44,574 | INFO     | corecount: 4
[2026-03-12 15:39:10] 2026-03-12 14:37:44,574 | INFO     | event service: False
[2026-03-12 15:39:10] 2026-03-12 14:37:44,574 | INFO     | sizes: {0: 2279813, 1: 2280274, 11: 2280274, 4732: 2306529, 4734: 2315551, 4736: 2315607, 4737: 2315929}
[2026-03-12 15:39:10] 2026-03-12 14:37:44,574 | INFO     | --------------------------------------------------
[2026-03-12 15:39:10] 2026-03-12 14:37:44,574 | INFO     | 
[2026-03-12 15:39:10] 2026-03-12 14:37:44,574 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot100/slots/1
[2026-03-12 15:39:10] 2026-03-12 14:37:44,594 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-12 15:39:10] 2026-03-12 14:37:44,594 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-12 15:39:10] 2026-03-12 14:37:44,594 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-12 15:39:10] 2026-03-12 14:37:44,594 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-12 15:39:10] 2026-03-12 14:37:44,594 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-12 15:39:10] 2026-03-12 14:37:44,594 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-12 15:39:10] 2026-03-12 14:37:44,594 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-12 15:39:10] 2026-03-12 14:37:44,594 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-12 15:39:10] 2026-03-12 14:37:44,594 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-12 15:39:10] 2026-03-12 14:37:44,594 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-12 15:39:10] 2026-03-12 14:37:44,594 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-12 15:39:10] 2026-03-12 14:37:44,594 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-12 15:39:10] 2026-03-12 14:37:44,594 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-12 15:39:10] 2026-03-12 14:37:44,595 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-12 15:39:10] 2026-03-12 14:37:44,595 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-12 15:39:10] 2026-03-12 14:37:44,595 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-12 15:39:10] 2026-03-12 14:37:44,595 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-12 15:39:10] 2026-03-12 14:37:44,595 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-12 15:39:10] 2026-03-12 14:37:44,595 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-12 15:39:10] 2026-03-12 14:37:44,595 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-12 15:39:10] 2026-03-12 14:37:44,595 | INFO     | job 7038555602 has completed (purged errors)
[2026-03-12 15:39:10] 2026-03-12 14:37:44,595 | INFO     | overall cleanup function is called
[2026-03-12 15:39:10] 2026-03-12 14:37:45,602 | INFO     | --- collectZombieJob: --- 10, [890374]
[2026-03-12 15:39:10] 2026-03-12 14:37:45,602 | INFO     | zombie collector waiting for pid 890374
[2026-03-12 15:39:10] 2026-03-12 14:37:45,602 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-12 15:39:10] 2026-03-12 14:37:45,602 | INFO     | collected zombie processes
[2026-03-12 15:39:10] 2026-03-12 14:37:45,602 | INFO     | will attempt to kill all subprocesses of pid=890374
[2026-03-12 15:39:10] 2026-03-12 14:37:46,081 | INFO     | process IDs to be killed: [890374] (in reverse order)
[2026-03-12 15:39:10] 2026-03-12 14:37:46,311 | WARNING  | found no corresponding commands to process id(s)
[2026-03-12 15:39:10] 2026-03-12 14:37:46,312 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-12 15:39:10] 2026-03-12 14:37:46,345 | INFO     | did not find any defunct processes belonging to 890374
[2026-03-12 15:39:10] 2026-03-12 14:37:46,377 | INFO     | did not find any defunct processes belonging to 890374
[2026-03-12 15:39:10] 2026-03-12 14:37:46,377 | INFO     | ready for new job
[2026-03-12 15:39:10] 2026-03-12 14:37:46,377 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-12 15:39:10] 2026-03-12 14:37:46,378 | INFO     | **************************************
[2026-03-12 15:39:10] 2026-03-12 14:37:46,378 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-12 15:39:10] 2026-03-12 14:37:46,378 | INFO     | **************************************
[2026-03-12 15:39:10] 2026-03-12 14:37:46,379 | INFO     | 
[2026-03-12 15:39:10] 2026-03-12 14:37:46,385 | INFO     | architecture information:
[2026-03-12 15:39:10] 2026-03-12 14:37:46,385 | INFO     | executing command: cat /etc/os-release
[2026-03-12 15:39:10] 2026-03-12 14:37:46,403 | INFO     | cat /etc/os-release:
[2026-03-12 15:39:10] NAME="CentOS Linux"
[2026-03-12 15:39:10] VERSION="7 (Core)"
[2026-03-12 15:39:10] ID="centos"
[2026-03-12 15:39:10] ID_LIKE="rhel fedora"
[2026-03-12 15:39:10] VERSION_ID="7"
[2026-03-12 15:39:10] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-12 15:39:10] ANSI_COLOR="0;31"
[2026-03-12 15:39:10] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-12 15:39:10] HOME_URL="https://www.centos.org/"
[2026-03-12 15:39:10] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-12 15:39:10] 
[2026-03-12 15:39:10] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-12 15:39:10] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-12 15:39:10] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-12 15:39:10] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-12 15:39:10] 
[2026-03-12 15:39:10] 2026-03-12 14:37:46,403 | INFO     | **************************************
[2026-03-12 15:39:10] 2026-03-12 14:37:46,906 | INFO     | executing command: df -mP /var/lib/boinc/var/slot100/slots/1
[2026-03-12 15:39:10] 2026-03-12 14:37:46,921 | INFO     | sufficient remaining disk space (20876099584 B)
[2026-03-12 15:39:10] 2026-03-12 14:37:46,921 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-12 15:39:10] 2026-03-12 14:37:46,921 | INFO     | current server update state: UPDATING_FINAL
[2026-03-12 15:39:10] 2026-03-12 14:37:46,921 | INFO     | update_server=False
[2026-03-12 15:39:10] 2026-03-12 14:37:46,921 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-12 15:39:10] 2026-03-12 14:37:46,982 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-12 15:39:10] 2026-03-12 14:37:46,997 | INFO     | all job control threads have been joined
[2026-03-12 15:39:10] 2026-03-12 14:37:47,194 | INFO     | all data control threads have been joined
[2026-03-12 15:39:10] 2026-03-12 14:37:47,386 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-12 15:39:10] 2026-03-12 14:37:47,386 | INFO     | aborting loop
[2026-03-12 15:39:10] 2026-03-12 14:37:47,927 | INFO     | [job] retrieve thread has finished
[2026-03-12 15:39:10] 2026-03-12 14:37:47,986 | INFO     | [data] copytool_in thread has finished
[2026-03-12 15:39:10] 2026-03-12 14:37:48,002 | INFO     | [job] control thread has finished
[2026-03-12 15:39:10] 2026-03-12 14:37:48,199 | INFO     | [data] control thread has finished
[2026-03-12 15:39:10] 2026-03-12 14:37:48,252 | INFO     | [payload] execute_payloads thread has finished
[2026-03-12 15:39:10] 2026-03-12 14:37:48,316 | INFO     | [payload] failed_post thread has finished
[2026-03-12 15:39:10] 2026-03-12 14:37:48,391 | INFO     | [job] job monitor thread has finished
[2026-03-12 15:39:10] 2026-03-12 14:37:48,409 | INFO     | all payload control threads have been joined
[2026-03-12 15:39:10] 2026-03-12 14:37:48,804 | INFO     | [payload] validate_post thread has finished
[2026-03-12 15:39:10] 2026-03-12 14:37:48,987 | INFO     | [data] copytool_out thread has finished
[2026-03-12 15:39:10] 2026-03-12 14:37:49,187 | INFO     | [payload] validate_pre thread has finished
[2026-03-12 15:39:10] 2026-03-12 14:37:49,253 | INFO     | [job] validate thread has finished
[2026-03-12 15:39:10] 2026-03-12 14:37:49,297 | INFO     | [job] create_data_payload thread has finished
[2026-03-12 15:39:10] 2026-03-12 14:37:49,415 | INFO     | [payload] control thread has finished
[2026-03-12 15:39:10] 2026-03-12 14:37:49,498 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-12 15:39:10] 2026-03-12 14:37:49,587 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-12 15:39:10] 2026-03-12 14:37:50,592 | INFO     | [job] queue monitor thread has finished
[2026-03-12 15:39:10] 2026-03-12 14:37:53,503 | INFO     | [data] queue_monitor thread has finished
[2026-03-12 15:39:10] 2026-03-12 14:37:57,190 | INFO     | job.realtimelogging is not enabled
[2026-03-12 15:39:10] 2026-03-12 14:37:58,197 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-12 15:39:10] 2026-03-12 14:38:17,823 | INFO     | PID=884393 has CPU usage=5.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-12 15:39:10] 2026-03-12 14:38:17,823 | INFO     | .. there are 45 such processes running
[2026-03-12 15:39:10] 2026-03-12 14:38:17,823 | INFO     | found 0 job(s) in 20 queues
[2026-03-12 15:39:10] 2026-03-12 14:38:17,823 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-12 15:39:10] 2026-03-12 14:38:17,824 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-12 15:39:10] 2026-03-12 14:38:43,967 | INFO     | [monitor] cgroup control has ended
[2026-03-12 15:39:10] 2026-03-12 14:38:44,972 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22966996584256)>', '<ExcThread(monitor, started 22966758029056)>']
[2026-03-12 15:39:10] 2026-03-12 14:38:45,964 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-12 15:39:10] 2026-03-12 14:38:45,964 | INFO     | [monitor] control thread has ended
[2026-03-12 15:39:10] 2026-03-12 14:38:49,997 | INFO     | all workflow threads have been joined
[2026-03-12 15:39:10] 2026-03-12 14:38:49,997 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-12 15:39:10] 2026-03-12 14:38:49,997 | INFO     | traces error code: 0
[2026-03-12 15:39:10] 2026-03-12 14:38:49,997 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-12 15:39:10] 2026-03-12 14:38:50,132 [wrapper] ==== pilot stdout END ====
[2026-03-12 15:39:10] 2026-03-12 14:38:50,135 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-12 15:39:10] 2026-03-12 14:38:50,137 [wrapper] pilotpid: 884393
[2026-03-12 15:39:10] 2026-03-12 14:38:50,141 [wrapper] Pilot exit status: 0
[2026-03-12 15:39:10] 2026-03-12 14:38:50,150 [wrapper] pandaids: 7038555602
[2026-03-12 15:39:10] 2026-03-12 14:38:50,289 [wrapper] cleanup supervisor_pilot 1388460 884394
[2026-03-12 15:39:10] 2026-03-12 14:38:50,293 [wrapper] Test setup, not cleaning
[2026-03-12 15:39:10] 2026-03-12 14:38:50,295 [wrapper] apfmon messages muted
[2026-03-12 15:39:10] 2026-03-12 14:38:50,297 [wrapper] ==== wrapper stdout END ====
[2026-03-12 15:39:10] 2026-03-12 14:38:50,299 [wrapper] ==== wrapper stderr END ====
[2026-03-12 15:39:10]  *** Error codes and diagnostics ***
[2026-03-12 15:39:10]     "exeErrorCode": 0,
[2026-03-12 15:39:10]     "exeErrorDiag": "",
[2026-03-12 15:39:10]     "pilotErrorCode": 0,
[2026-03-12 15:39:10]     "pilotErrorDiag": "",
[2026-03-12 15:39:10]  *** Listing of results directory ***
[2026-03-12 15:39:10] total 615340
[2026-03-12 15:39:10] -rw-r--r--. 1 boinc boinc    584627 Mar  5 03:30 pilot3.tar.gz
[2026-03-12 15:39:10] -rwx------. 1 boinc boinc     36322 Mar  5 03:31 runpilot2-wrapper.sh
[2026-03-12 15:39:10] -rw-r--r--. 1 boinc boinc      5111 Mar  5 03:32 queuedata.json
[2026-03-12 15:39:10] -rw-r--r--. 1 boinc boinc       100 Mar 12 14:18 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-12 15:39:10] -rwxr-xr-x. 1 boinc boinc      7986 Mar 12 14:18 run_atlas
[2026-03-12 15:39:10] -rw-r--r--. 1 boinc boinc       105 Mar 12 14:18 job.xml
[2026-03-12 15:39:10] -rw-r--r--. 1 boinc boinc      6709 Mar 12 14:18 init_data.xml
[2026-03-12 15:39:10] -rw-r--r--. 2 boinc boinc 436860963 Mar 12 14:18 EVNT.46701403._002112.pool.root.1
[2026-03-12 15:39:10] -rw-r--r--. 2 boinc boinc     15845 Mar 12 14:18 start_atlas.sh
[2026-03-12 15:39:10] drwxrwx--x. 2 boinc boinc      4096 Mar 12 14:18 shared
[2026-03-12 15:39:10] -rw-r--r--. 2 boinc boinc    597957 Mar 12 14:18 input.tar.gz
[2026-03-12 15:39:10] -rw-r--r--. 1 boinc boinc         0 Mar 12 14:18 boinc_lockfile
[2026-03-12 15:39:10] -rw-r--r--. 1 boinc boinc      2570 Mar 12 14:18 pandaJob.out
[2026-03-12 15:39:10] -rw-------. 1 boinc boinc   1006268 Mar 12 14:18 agis_schedconf.cvmfs.json
[2026-03-12 15:39:10] -rw-------. 1 boinc boinc   1511578 Mar 12 14:18 agis_ddmendpoints.agis.ALL.json
[2026-03-12 15:39:10] -rw-------. 1 boinc boinc       444 Mar 12 14:18 workernode_map.json
[2026-03-12 15:39:10] drwx------. 5 boinc boinc      4096 Mar 12 14:18 pilot3
[2026-03-12 15:39:10] -rw-------. 1 boinc boinc 187333590 Mar 12 15:37 HITS.48955015._003387.pool.root.1
[2026-03-12 15:39:10] -rw-------. 1 boinc boinc      1043 Mar 12 15:37 memory_monitor_summary.json
[2026-03-12 15:39:10] -rw-r--r--. 1 boinc boinc       529 Mar 12 15:37 boinc_task_state.xml
[2026-03-12 15:39:10] -rw-------. 1 boinc boinc    295475 Mar 12 15:37 log.48955015._003387.job.log.tgz.1
[2026-03-12 15:39:10] -rw-------. 1 boinc boinc      6356 Mar 12 15:37 heartbeat.json
[2026-03-12 15:39:10] -rw-------. 1 boinc boinc        95 Mar 12 15:38 pilot_heartbeat.json
[2026-03-12 15:39:10] -rw-------. 1 boinc boinc      4901 Mar 12 15:38 pilotlog.txt
[2026-03-12 15:39:10] -rw-------. 1 boinc boinc    695256 Mar 12 15:38 log.48955015._003387.job.log.1
[2026-03-12 15:39:10] -rw-------. 1 boinc boinc       357 Mar 12 15:38 output.list
[2026-03-12 15:39:10] -rw-r--r--. 1 boinc boinc       620 Mar 12 15:38 runtime_log
[2026-03-12 15:39:10] -rw-------. 1 boinc boinc   1003520 Mar 12 15:38 result.tar.gz
[2026-03-12 15:39:10] -rw-r--r--. 1 boinc boinc      9221 Mar 12 15:38 runtime_log.err
[2026-03-12 15:39:10] -rw-------. 1 boinc boinc       661 Mar 12 15:38 EuKKDmbfDI9n9Rq4apOajLDm4fhM0noT9bVooX4SDm8ZKLDm1iRvQn.diag
[2026-03-12 15:39:10] -rw-r--r--. 1 boinc boinc        27 Mar 12 15:39 wrapper_checkpoint.txt
[2026-03-12 15:39:10] -rw-r--r--. 1 boinc boinc      8192 Mar 12 15:39 boinc_mmap_file
[2026-03-12 15:39:10] -rw-r--r--. 1 boinc boinc     21238 Mar 12 15:39 stderr.txt
[2026-03-12 15:39:10] HITS file was successfully produced:
[2026-03-12 15:39:10] -rw-------. 1 boinc boinc 187333590 Mar 12 15:37 shared/HITS.pool.root.1
[2026-03-12 15:39:10]  *** Contents of shared directory: ***
[2026-03-12 15:39:10] total 611156
[2026-03-12 15:39:10] -rw-r--r--. 2 boinc boinc 436860963 Mar 12 14:18 ATLAS.root_0
[2026-03-12 15:39:10] -rw-r--r--. 2 boinc boinc     15845 Mar 12 14:18 start_atlas.sh
[2026-03-12 15:39:10] -rw-r--r--. 2 boinc boinc    597957 Mar 12 14:18 input.tar.gz
[2026-03-12 15:39:10] -rw-------. 1 boinc boinc 187333590 Mar 12 15:37 HITS.pool.root.1
[2026-03-12 15:39:10] -rw-------. 1 boinc boinc   1003520 Mar 12 15:38 result.tar.gz
15:39:11 (879318): run_atlas exited; CPU time 18413.522109
15:39:11 (879318): called boinc_finish(0)

</stderr_txt>
]]>

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