Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
20:50:13 (2687035): wrapper (7.7.26015): starting
20:50:13 (2687035): wrapper: running run_atlas (--nthreads 4)
[2026-03-12 20:50:13] Arguments: --nthreads 4
[2026-03-12 20:50:13] Threads: 4
[2026-03-12 20:50:13] Checking for CVMFS
[2026-03-12 20:50:13] No cvmfs_config command found, will try listing directly
[2026-03-12 20:50:13] CVMFS is ok
[2026-03-12 20:50:13] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-12 20:50:13] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-12 20:50:13] Further information can be found at the LHC@home message board.
[2026-03-12 20:50:13] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-12 20:50:13] Checking for apptainer binary...
[2026-03-12 20:50:13] which: no apptainer in ((null))
[2026-03-12 20:50:13] apptainer is not installed, using version from CVMFS
[2026-03-12 20:50:13] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-12 20:50:13] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot60/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut01.grid.cesnet.cz
[2026-03-12 20:50:13] apptainer works
[2026-03-12 20:50:13] Set ATHENA_PROC_NUMBER=4
[2026-03-12 20:50:13] Set ATHENA_CORE_NUMBER=4
[2026-03-12 20:50:13] Starting ATLAS job with PandaID=7049311936
[2026-03-12 20:50:13] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot60/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-13 00:32:55]  *** The last 200 lines of the pilot log: ***
[2026-03-13 00:32:55] 2026-03-12 23:26:11,976 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-13 00:32:55] 2026-03-12 23:26:11,977 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-13 00:32:55] 2026-03-12 23:26:11,977 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-13 00:32:55] 2026-03-12 23:26:11,980 | INFO     | fitting pss+swap vs Time
[2026-03-13 00:32:55] 2026-03-12 23:26:11,981 | INFO     | sum of square deviations: 2954447953.0
[2026-03-13 00:32:55] 2026-03-12 23:26:11,982 | INFO     | sum of deviations: 7833285140.499996
[2026-03-13 00:32:55] 2026-03-12 23:26:11,982 | INFO     | mean x: 1773351489.5
[2026-03-13 00:32:55] 2026-03-12 23:26:11,982 | INFO     | mean y: 2325307.4386792453
[2026-03-13 00:32:55] 2026-03-12 23:26:11,982 | INFO     | intersect: -4699455902.644423
[2026-03-13 00:32:55] 2026-03-12 23:26:11,983 | INFO     | chi2: 1.3589635385592556
[2026-03-13 00:32:55] 2026-03-12 23:26:11,983 | INFO     | sum of square deviations: 2750295288.0
[2026-03-13 00:32:55] 2026-03-12 23:26:11,984 | INFO     | sum of deviations: 7635335230.000003
[2026-03-13 00:32:55] 2026-03-12 23:26:11,985 | INFO     | mean x: 1773351337.0
[2026-03-13 00:32:55] 2026-03-12 23:26:11,985 | INFO     | mean y: 2325159.574879227
[2026-03-13 00:32:55] 2026-03-12 23:26:11,985 | INFO     | intersect: -4920830545.79304
[2026-03-13 00:32:55] 2026-03-12 23:26:11,985 | INFO     | chi2: 1.3594506321350674
[2026-03-13 00:32:55] 2026-03-12 23:26:11,985 | INFO     | current chi2=1.3594506321350674 (change=-0.03584302021291156 %)
[2026-03-13 00:32:55] 2026-03-12 23:26:11,985 | INFO     | right removable region: 206
[2026-03-13 00:32:55] 2026-03-12 23:26:11,986 | INFO     | sum of square deviations: 2750295288.0
[2026-03-13 00:32:55] 2026-03-12 23:26:11,987 | INFO     | sum of deviations: -17279828680.0
[2026-03-13 00:32:55] 2026-03-12 23:26:11,987 | INFO     | mean x: 1773351642.0
[2026-03-13 00:32:55] 2026-03-12 23:26:11,987 | INFO     | mean y: 2343815.502415459
[2026-03-13 00:32:55] 2026-03-12 23:26:11,987 | INFO     | intersect: 11144133825.054543
[2026-03-13 00:32:55] 2026-03-12 23:26:11,988 | INFO     | chi2: 0.07876848170131333
[2026-03-13 00:32:55] 2026-03-12 23:26:11,988 | INFO     | current chi2=0.07876848170131333 (change=94.2037825544001 %)
[2026-03-13 00:32:55] 2026-03-12 23:26:11,988 | INFO     | sum of square deviations: 2555770710.5
[2026-03-13 00:32:55] 2026-03-12 23:26:11,989 | INFO     | sum of deviations: -13058618279.499998
[2026-03-13 00:32:55] 2026-03-12 23:26:11,989 | INFO     | mean x: 1773351794.5
[2026-03-13 00:32:55] 2026-03-12 23:26:11,989 | INFO     | mean y: 2340502.371287129
[2026-03-13 00:32:55] 2026-03-12 23:26:11,990 | INFO     | intersect: 9063217546.036673
[2026-03-13 00:32:55] 2026-03-12 23:26:11,990 | INFO     | chi2: 0.07022014295818378
[2026-03-13 00:32:55] 2026-03-12 23:26:11,990 | INFO     | current chi2=0.07022014295818378 (change=10.852486373349784 %)
[2026-03-13 00:32:55] 2026-03-12 23:26:11,990 | INFO     | left removable region: 20
[2026-03-13 00:32:55] 2026-03-12 23:26:11,990 | INFO     | sum of square deviations: 1995283922.5
[2026-03-13 00:32:55] 2026-03-12 23:26:11,991 | INFO     | sum of deviations: -3007536253.0
[2026-03-13 00:32:55] 2026-03-12 23:26:11,992 | INFO     | mean x: 1773351916.5
[2026-03-13 00:32:55] 2026-03-12 23:26:11,992 | INFO     | mean y: 2332027.505376344
[2026-03-13 00:32:55] 2026-03-12 23:26:11,992 | INFO     | intersect: 2675345185.2108955
[2026-03-13 00:32:55] 2026-03-12 23:26:11,992 | INFO     | chi2: 0.03181599997621746
[2026-03-13 00:32:55] 2026-03-12 23:26:11,992 | INFO     | current memory leak: -1.51 B/s (using 186 data points, chi2=0.03)
[2026-03-13 00:32:55] 2026-03-12 23:26:11,993 | INFO     | could have reported an average CPU frequency of 2596 MHz (11 samples)
[2026-03-13 00:32:55] 2026-03-12 23:26:11,993 | INFO     | ..............................
[2026-03-13 00:32:55] 2026-03-12 23:26:11,993 | INFO     | . Timing measurements:
[2026-03-13 00:32:55] 2026-03-12 23:26:11,993 | INFO     | . get job = 0 s
[2026-03-13 00:32:55] 2026-03-12 23:26:11,993 | INFO     | . initial setup = 6 s
[2026-03-13 00:32:55] 2026-03-12 23:26:11,993 | INFO     | . payload setup = 6 s
[2026-03-13 00:32:55] 2026-03-12 23:26:11,993 | INFO     | . stage-in = 0 s
[2026-03-13 00:32:55] 2026-03-12 23:26:11,993 | INFO     | . payload execution = 12916 s
[2026-03-13 00:32:55] 2026-03-12 23:26:11,993 | INFO     | . stage-out = 1 s
[2026-03-13 00:32:55] 2026-03-12 23:26:11,994 | INFO     | . log creation = 0 s
[2026-03-13 00:32:55] 2026-03-12 23:26:11,994 | INFO     | ..............................
[2026-03-13 00:32:55] 2026-03-12 23:26:12,082 | INFO     | 
[2026-03-13 00:32:55] 2026-03-12 23:26:12,082 | INFO     | job summary report
[2026-03-13 00:32:55] 2026-03-12 23:26:12,082 | INFO     | --------------------------------------------------
[2026-03-13 00:32:55] 2026-03-12 23:26:12,083 | INFO     | PanDA job id: 7049311936
[2026-03-13 00:32:55] 2026-03-12 23:26:12,083 | INFO     | task id: 48967085
[2026-03-13 00:32:55] 2026-03-12 23:26:12,083 | INFO     | errors: (none)
[2026-03-13 00:32:55] 2026-03-12 23:26:12,083 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-13 00:32:55] 2026-03-12 23:26:12,083 | INFO     | pilot state: finished 
[2026-03-13 00:32:55] 2026-03-12 23:26:12,083 | INFO     | transexitcode: 0
[2026-03-13 00:32:55] 2026-03-12 23:26:12,083 | INFO     | exeerrorcode: 0
[2026-03-13 00:32:55] 2026-03-12 23:26:12,083 | INFO     | exeerrordiag: 
[2026-03-13 00:32:55] 2026-03-12 23:26:12,083 | INFO     | exitcode: 0
[2026-03-13 00:32:55] 2026-03-12 23:26:12,083 | INFO     | exitmsg: OK
[2026-03-13 00:32:55] 2026-03-12 23:26:12,083 | INFO     | cpuconsumptiontime: 49857 s
[2026-03-13 00:32:55] 2026-03-12 23:26:12,083 | INFO     | nevents: 400
[2026-03-13 00:32:55] 2026-03-12 23:26:12,083 | INFO     | neventsw: 0
[2026-03-13 00:32:55] 2026-03-12 23:26:12,083 | INFO     | pid: 2695981
[2026-03-13 00:32:55] 2026-03-12 23:26:12,083 | INFO     | pgrp: 2695981
[2026-03-13 00:32:55] 2026-03-12 23:26:12,084 | INFO     | corecount: 4
[2026-03-13 00:32:55] 2026-03-12 23:26:12,084 | INFO     | event service: False
[2026-03-13 00:32:55] 2026-03-12 23:26:12,084 | INFO     | sizes: {0: 2279148, 1: 2280277, 12: 2280277, 12926: 2310190, 12928: 2319210, 12930: 2319588}
[2026-03-13 00:32:55] 2026-03-12 23:26:12,084 | INFO     | --------------------------------------------------
[2026-03-13 00:32:55] 2026-03-12 23:26:12,084 | INFO     | 
[2026-03-13 00:32:55] 2026-03-12 23:26:12,084 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot60/slots/0
[2026-03-13 00:32:55] 2026-03-12 23:26:12,107 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-13 00:32:55] 2026-03-12 23:26:12,107 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-13 00:32:55] 2026-03-12 23:26:12,107 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-13 00:32:55] 2026-03-12 23:26:12,107 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-13 00:32:55] 2026-03-12 23:26:12,107 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-13 00:32:55] 2026-03-12 23:26:12,107 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-13 00:32:55] 2026-03-12 23:26:12,107 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-13 00:32:55] 2026-03-12 23:26:12,107 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-13 00:32:55] 2026-03-12 23:26:12,108 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-13 00:32:55] 2026-03-12 23:26:12,108 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-13 00:32:55] 2026-03-12 23:26:12,108 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-13 00:32:55] 2026-03-12 23:26:12,108 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-13 00:32:55] 2026-03-12 23:26:12,108 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-13 00:32:55] 2026-03-12 23:26:12,108 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-13 00:32:55] 2026-03-12 23:26:12,108 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-13 00:32:55] 2026-03-12 23:26:12,108 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-13 00:32:55] 2026-03-12 23:26:12,108 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-13 00:32:55] 2026-03-12 23:26:12,108 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-13 00:32:55] 2026-03-12 23:26:12,108 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-13 00:32:55] 2026-03-12 23:26:12,109 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-13 00:32:55] 2026-03-12 23:26:12,109 | INFO     | job 7049311936 has completed (purged errors)
[2026-03-13 00:32:55] 2026-03-12 23:26:12,109 | INFO     | overall cleanup function is called
[2026-03-13 00:32:55] 2026-03-12 23:26:13,116 | INFO     | --- collectZombieJob: --- 10, [2695981]
[2026-03-13 00:32:55] 2026-03-12 23:26:13,117 | INFO     | zombie collector waiting for pid 2695981
[2026-03-13 00:32:55] 2026-03-12 23:26:13,117 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-13 00:32:55] 2026-03-12 23:26:13,117 | INFO     | collected zombie processes
[2026-03-13 00:32:55] 2026-03-12 23:26:13,117 | INFO     | will attempt to kill all subprocesses of pid=2695981
[2026-03-13 00:32:55] 2026-03-12 23:26:13,637 | INFO     | process IDs to be killed: [2695981] (in reverse order)
[2026-03-13 00:32:55] 2026-03-12 23:26:13,762 | WARNING  | found no corresponding commands to process id(s)
[2026-03-13 00:32:55] 2026-03-12 23:26:13,763 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-13 00:32:55] 2026-03-12 23:26:13,791 | INFO     | did not find any defunct processes belonging to 2695981
[2026-03-13 00:32:55] 2026-03-12 23:26:13,817 | INFO     | did not find any defunct processes belonging to 2695981
[2026-03-13 00:32:55] 2026-03-12 23:26:13,817 | INFO     | ready for new job
[2026-03-13 00:32:55] 2026-03-12 23:26:13,817 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-13 00:32:55] 2026-03-12 23:26:13,820 | INFO     | **************************************
[2026-03-13 00:32:55] 2026-03-12 23:26:13,820 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-13 00:32:55] 2026-03-12 23:26:13,820 | INFO     | **************************************
[2026-03-13 00:32:55] 2026-03-12 23:26:13,820 | INFO     | 
[2026-03-13 00:32:55] 2026-03-12 23:26:13,825 | INFO     | architecture information:
[2026-03-13 00:32:55] 2026-03-12 23:26:13,825 | INFO     | executing command: cat /etc/os-release
[2026-03-13 00:32:55] 2026-03-12 23:26:13,845 | INFO     | cat /etc/os-release:
[2026-03-13 00:32:55] NAME="CentOS Linux"
[2026-03-13 00:32:55] VERSION="7 (Core)"
[2026-03-13 00:32:55] ID="centos"
[2026-03-13 00:32:55] ID_LIKE="rhel fedora"
[2026-03-13 00:32:55] VERSION_ID="7"
[2026-03-13 00:32:55] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-13 00:32:55] ANSI_COLOR="0;31"
[2026-03-13 00:32:55] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-13 00:32:55] HOME_URL="https://www.centos.org/"
[2026-03-13 00:32:55] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-13 00:32:55] 
[2026-03-13 00:32:55] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-13 00:32:55] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-13 00:32:55] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-13 00:32:55] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-13 00:32:55] 
[2026-03-13 00:32:55] 2026-03-12 23:26:13,845 | INFO     | **************************************
[2026-03-13 00:32:55] 2026-03-12 23:26:14,001 | WARNING  | process 2695981 can no longer be monitored (due to stat problems) - aborting
[2026-03-13 00:32:55] 2026-03-12 23:26:14,303 | INFO     | using path: /var/lib/boinc/var/slot60/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-03-13 00:32:55] 2026-03-12 23:26:14,304 | INFO     | using path: /var/lib/boinc/var/slot60/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-03-13 00:32:55] 2026-03-12 23:26:14,305 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-03-13 00:32:55] 2026-03-12 23:26:14,305 | WARNING  | maxPSS not found in memory monitor output
[2026-03-13 00:32:55] 2026-03-12 23:26:14,306 | INFO     | skipping file size check of payload stdout file (/var/lib/boinc/var/slot60/slots/0/PanDA_Pilot-7049311936/payload.stdout) since it has not been created yet
[2026-03-13 00:32:55] 2026-03-12 23:26:14,306 | INFO     | executing command: df -mP /var/lib/boinc/var/slot60/slots/0
[2026-03-13 00:32:55] 2026-03-12 23:26:14,323 | INFO     | sufficient remaining disk space (26822574080 B)
[2026-03-13 00:32:55] 2026-03-12 23:26:14,324 | WARNING  | skipping size check of workdir since it has not been created yet
[2026-03-13 00:32:55] 2026-03-12 23:26:14,324 | INFO     | output file size check: skipping output file /var/lib/boinc/var/slot60/slots/0/PanDA_Pilot-7049311936/HITS.48967085._003483.pool.root.1 since it does not exist
[2026-03-13 00:32:55] 2026-03-12 23:26:14,349 | INFO     | executing command: df -mP /var/lib/boinc/var/slot60/slots/0
[2026-03-13 00:32:55] 2026-03-12 23:26:14,367 | INFO     | sufficient remaining disk space (26822574080 B)
[2026-03-13 00:32:55] 2026-03-12 23:26:14,367 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-13 00:32:55] 2026-03-12 23:26:14,368 | INFO     | current server update state: UPDATING_FINAL
[2026-03-13 00:32:55] 2026-03-12 23:26:14,368 | INFO     | update_server=False
[2026-03-13 00:32:55] 2026-03-12 23:26:14,368 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-13 00:32:55] 2026-03-12 23:26:14,698 | INFO     | number of running child processes to parent process 2695981: 1
[2026-03-13 00:32:55] 2026-03-12 23:26:14,698 | INFO     | maximum number of monitored processes: 6
[2026-03-13 00:32:55] 2026-03-12 23:26:14,699 | INFO     | aborting job monitoring since job object (job id=7049311936) has expired
[2026-03-13 00:32:55] 2026-03-12 23:26:14,699 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-13 00:32:55] 2026-03-12 23:26:14,699 | INFO     | will abort loop
[2026-03-13 00:32:55] 2026-03-12 23:26:15,317 | INFO     | all data control threads have been joined
[2026-03-13 00:32:55] 2026-03-12 23:26:15,373 | INFO     | [job] retrieve thread has finished
[2026-03-13 00:32:55] 2026-03-12 23:26:15,532 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-13 00:32:55] 2026-03-12 23:26:15,570 | INFO     | [payload] failed_post thread has finished
[2026-03-13 00:32:55] 2026-03-12 23:26:15,598 | INFO     | [job] create_data_payload thread has finished
[2026-03-13 00:32:55] 2026-03-12 23:26:15,605 | INFO     | [job] validate thread has finished
[2026-03-13 00:32:55] 2026-03-12 23:26:15,618 | INFO     | all job control threads have been joined
[2026-03-13 00:32:55] 2026-03-12 23:26:15,704 | INFO     | [job] job monitor thread has finished
[2026-03-13 00:32:55] 2026-03-12 23:26:15,724 | INFO     | all payload control threads have been joined
[2026-03-13 00:32:55] 2026-03-12 23:26:15,828 | INFO     | [payload] validate_pre thread has finished
[2026-03-13 00:32:55] 2026-03-12 23:26:16,002 | INFO     | [payload] validate_post thread has finished
[2026-03-13 00:32:55] 2026-03-12 23:26:16,295 | INFO     | [data] copytool_in thread has finished
[2026-03-13 00:32:55] 2026-03-12 23:26:16,322 | INFO     | [data] control thread has finished
[2026-03-13 00:32:55] 2026-03-12 23:26:16,623 | INFO     | [job] control thread has finished
[2026-03-13 00:32:55] 2026-03-12 23:26:16,653 | INFO     | [payload] execute_payloads thread has finished
[2026-03-13 00:32:55] 2026-03-12 23:26:16,729 | INFO     | [payload] control thread has finished
[2026-03-13 00:32:55] 2026-03-12 23:26:17,092 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-13 00:32:55] 2026-03-12 23:26:17,534 | INFO     | [data] copytool_out thread has finished
[2026-03-13 00:32:55] 2026-03-12 23:26:17,859 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-13 00:32:55] 2026-03-12 23:26:18,097 | INFO     | [job] queue monitor thread has finished
[2026-03-13 00:32:55] 2026-03-12 23:26:21,864 | INFO     | [data] queue_monitor thread has finished
[2026-03-13 00:32:55] 2026-03-12 23:26:24,869 | INFO     | job.realtimelogging is not enabled
[2026-03-13 00:32:55] 2026-03-12 23:26:25,870 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-13 00:32:55] 2026-03-12 23:26:44,331 | INFO     | PID=2691110 has CPU usage=9.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-13 00:32:55] 2026-03-12 23:26:44,332 | INFO     | .. there are 10 such processes running
[2026-03-13 00:32:55] 2026-03-12 23:26:44,332 | INFO     | found 0 job(s) in 20 queues
[2026-03-13 00:32:55] 2026-03-12 23:26:44,333 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-13 00:32:55] 2026-03-12 23:26:44,333 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-13 00:32:55] 2026-03-12 23:26:51,387 | INFO     | [monitor] cgroup control has ended
[2026-03-13 00:32:55] 2026-03-12 23:26:52,545 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23200393058112)>', '<ExcThread(monitor, started 23200152168192)>']
[2026-03-13 00:32:55] 2026-03-12 23:26:53,364 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-13 00:32:55] 2026-03-12 23:26:53,364 | INFO     | [monitor] control thread has ended
[2026-03-13 00:32:55] 2026-03-12 23:26:57,562 | INFO     | all workflow threads have been joined
[2026-03-13 00:32:55] 2026-03-12 23:26:57,562 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-13 00:32:55] 2026-03-12 23:26:57,563 | INFO     | traces error code: 0
[2026-03-13 00:32:55] 2026-03-12 23:26:57,563 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-13 00:32:55] 2026-03-12 23:26:57,713 [wrapper] ==== pilot stdout END ====
[2026-03-13 00:32:55] 2026-03-12 23:26:57,716 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-13 00:32:55] 2026-03-12 23:26:57,719 [wrapper] pilotpid: 2691110
[2026-03-13 00:32:55] 2026-03-12 23:26:57,721 [wrapper] Pilot exit status: 0
[2026-03-13 00:32:55] 2026-03-12 23:26:57,730 [wrapper] pandaids: 7049311936
[2026-03-13 00:32:55] 2026-03-12 23:26:57,820 [wrapper] cleanup supervisor_pilot 2933894 2691111
[2026-03-13 00:32:55] 2026-03-12 23:26:57,823 [wrapper] Test setup, not cleaning
[2026-03-13 00:32:55] 2026-03-12 23:26:57,826 [wrapper] apfmon messages muted
[2026-03-13 00:32:55] 2026-03-12 23:26:57,829 [wrapper] ==== wrapper stdout END ====
[2026-03-13 00:32:55] 2026-03-12 23:26:57,831 [wrapper] ==== wrapper stderr END ====
[2026-03-13 00:32:55]  *** Error codes and diagnostics ***
[2026-03-13 00:32:55]     "exeErrorCode": 0,
[2026-03-13 00:32:55]     "exeErrorDiag": "",
[2026-03-13 00:32:55]     "pilotErrorCode": 0,
[2026-03-13 00:32:55]     "pilotErrorDiag": "",
[2026-03-13 00:32:55]  *** Listing of results directory ***
[2026-03-13 00:32:55] total 406400
[2026-03-13 00:32:55] -rw-r--r--. 1 boinc boinc    585013 Mar 11 01:16 pilot3.tar.gz
[2026-03-13 00:32:55] -rwx------. 1 boinc boinc     36322 Mar 11 01:21 runpilot2-wrapper.sh
[2026-03-13 00:32:55] -rw-r--r--. 1 boinc boinc      5111 Mar 11 01:21 queuedata.json
[2026-03-13 00:32:55] -rw-r--r--. 1 boinc boinc       100 Mar 12 20:50 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-13 00:32:55] -rwxr-xr-x. 1 boinc boinc      7986 Mar 12 20:50 run_atlas
[2026-03-13 00:32:55] -rw-r--r--. 1 boinc boinc       105 Mar 12 20:50 job.xml
[2026-03-13 00:32:55] -rw-r--r--. 1 boinc boinc      6563 Mar 12 20:50 init_data.xml
[2026-03-13 00:32:55] -rw-r--r--. 2 boinc boinc 210843878 Mar 12 20:50 EVNT.48967083._000140.pool.root.1
[2026-03-13 00:32:55] -rw-r--r--. 2 boinc boinc     15845 Mar 12 20:50 start_atlas.sh
[2026-03-13 00:32:55] drwxrwx--x. 2 boinc boinc      4096 Mar 12 20:50 shared
[2026-03-13 00:32:55] -rw-r--r--. 2 boinc boinc    597517 Mar 12 20:50 input.tar.gz
[2026-03-13 00:32:55] -rw-r--r--. 1 boinc boinc         0 Mar 12 20:50 boinc_lockfile
[2026-03-13 00:32:55] -rw-r--r--. 1 boinc boinc      2561 Mar 12 20:50 pandaJob.out
[2026-03-13 00:32:55] -rw-------. 1 boinc boinc   1006522 Mar 12 20:50 agis_schedconf.cvmfs.json
[2026-03-13 00:32:55] -rw-------. 1 boinc boinc       448 Mar 12 20:50 workernode_map.json
[2026-03-13 00:32:55] drwx------. 5 boinc boinc      4096 Mar 12 20:50 pilot3
[2026-03-13 00:32:55] -rw-------. 1 boinc boinc 196955394 Mar 13 00:25 HITS.48967085._003483.pool.root.1
[2026-03-13 00:32:55] -rw-r--r--. 1 boinc boinc       529 Mar 13 00:25 boinc_task_state.xml
[2026-03-13 00:32:55] -rw-------. 1 boinc boinc      1035 Mar 13 00:26 memory_monitor_summary.json
[2026-03-13 00:32:55] -rw-------. 1 boinc boinc   1511578 Mar 13 00:26 agis_ddmendpoints.agis.ALL.json
[2026-03-13 00:32:55] -rw-------. 1 boinc boinc    382016 Mar 13 00:26 log.48967085._003483.job.log.tgz.1
[2026-03-13 00:32:55] -rw-------. 1 boinc boinc      6395 Mar 13 00:26 heartbeat.json
[2026-03-13 00:32:55] -rw-------. 1 boinc boinc        95 Mar 13 00:26 pilot_heartbeat.json
[2026-03-13 00:32:55] -rw-------. 1 boinc boinc      6441 Mar 13 00:26 pilotlog.txt
[2026-03-13 00:32:55] -rw-------. 1 boinc boinc   1827294 Mar 13 00:26 log.48967085._003483.job.log.1
[2026-03-13 00:32:55] -rw-------. 1 boinc boinc       357 Mar 13 00:26 output.list
[2026-03-13 00:32:55] -rw-r--r--. 1 boinc boinc       620 Mar 13 00:26 runtime_log
[2026-03-13 00:32:55] -rw-------. 1 boinc boinc   2222080 Mar 13 00:26 result.tar.gz
[2026-03-13 00:32:55] -rw-r--r--. 1 boinc boinc      9205 Mar 13 00:26 runtime_log.err
[2026-03-13 00:32:55] -rw-------. 1 boinc boinc       665 Mar 13 00:26 dcvKDm4UMK9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmllhLDmQiCcMo.diag
[2026-03-13 00:32:55] -rw-r--r--. 1 boinc boinc        27 Mar 13 00:32 wrapper_checkpoint.txt
[2026-03-13 00:32:55] -rw-r--r--. 1 boinc boinc      8192 Mar 13 00:32 boinc_mmap_file
[2026-03-13 00:32:55] -rw-r--r--. 1 boinc boinc     21274 Mar 13 00:32 stderr.txt
[2026-03-13 00:32:55] HITS file was successfully produced:
[2026-03-13 00:32:55] -rw-------. 1 boinc boinc 196955394 Mar 13 00:25 shared/HITS.pool.root.1
[2026-03-13 00:32:55]  *** Contents of shared directory: ***
[2026-03-13 00:32:55] total 401024
[2026-03-13 00:32:55] -rw-r--r--. 2 boinc boinc 210843878 Mar 12 20:50 ATLAS.root_0
[2026-03-13 00:32:55] -rw-r--r--. 2 boinc boinc     15845 Mar 12 20:50 start_atlas.sh
[2026-03-13 00:32:55] -rw-r--r--. 2 boinc boinc    597517 Mar 12 20:50 input.tar.gz
[2026-03-13 00:32:55] -rw-------. 1 boinc boinc 196955394 Mar 13 00:25 HITS.pool.root.1
[2026-03-13 00:32:55] -rw-------. 1 boinc boinc   2222080 Mar 13 00:26 result.tar.gz
00:32:57 (2687035): run_atlas exited; CPU time 50393.177736
00:32:57 (2687035): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN