Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
17:33:24 (317363): wrapper (7.7.26015): starting
17:33:24 (317363): wrapper: running run_atlas (--nthreads 2)
[2026-03-11 17:33:24] Arguments: --nthreads 2
[2026-03-11 17:33:24] Threads: 2
[2026-03-11 17:33:24] Checking for CVMFS
[2026-03-11 17:33:24] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-11 17:33:24] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-11 17:33:24] Running cvmfs_config stat atlas.cern.ch
[2026-03-11 17:33:24] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-11 17:33:24] 2.9.2.0 2856 2949 56652 157161 0 49 27573973 36864000 0 130560 0 929207 99.977 112745 15581 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-11 17:33:24] CVMFS is ok
[2026-03-11 17:33:24] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-11 17:33:24] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-11 17:33:24] Further information can be found at the LHC@home message board.
[2026-03-11 17:33:24] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-11 17:33:24] Checking for apptainer binary...
[2026-03-11 17:33:24] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-11 17:33:24] Running /usr/bin/apptainer --version
[2026-03-11 17:33:24] apptainer version 1.4.1-1.1
[2026-03-11 17:33:24] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-11 17:33:24] thA337
[2026-03-11 17:33:24] apptainer works
[2026-03-11 17:33:24] Set ATHENA_PROC_NUMBER=2
[2026-03-11 17:33:24] Set ATHENA_CORE_NUMBER=2
[2026-03-11 17:33:24] Starting ATLAS job with PandaID=7049396983
[2026-03-11 17:33:24] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-11 22:00:14]  *** The last 200 lines of the pilot log: ***
[2026-03-11 22:00:14] 2026-03-11 20:59:12,973 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-11 22:00:14] 2026-03-11 20:59:12,973 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-11 22:00:14] 2026-03-11 20:59:12,973 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-11 22:00:14] 2026-03-11 20:59:12,973 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-11 22:00:14] 2026-03-11 20:59:12,973 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-11 22:00:14] 2026-03-11 20:59:12,973 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-11 22:00:14] 2026-03-11 20:59:12,973 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-11 22:00:14] 2026-03-11 20:59:12,973 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-11 22:00:14] 2026-03-11 20:59:12,973 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-11 22:00:14] 2026-03-11 20:59:12,973 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-11 22:00:14] 2026-03-11 20:59:12,973 | INFO     | job 7049396983 has completed (purged errors)
[2026-03-11 22:00:14] 2026-03-11 20:59:12,973 | INFO     | overall cleanup function is called
[2026-03-11 22:00:14] 2026-03-11 20:59:13,976 | INFO     | --- collectZombieJob: --- 10, [325796]
[2026-03-11 22:00:14] 2026-03-11 20:59:13,977 | INFO     | zombie collector waiting for pid 325796
[2026-03-11 22:00:14] 2026-03-11 20:59:13,977 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-11 22:00:14] 2026-03-11 20:59:13,978 | INFO     | collected zombie processes
[2026-03-11 22:00:14] 2026-03-11 20:59:13,978 | INFO     | will attempt to kill all subprocesses of pid=325796
[2026-03-11 22:00:14] 2026-03-11 20:59:14,009 | INFO     | process IDs to be killed: [325796] (in reverse order)
[2026-03-11 22:00:14] 2026-03-11 20:59:14,029 | WARNING  | found no corresponding commands to process id(s)
[2026-03-11 22:00:14] 2026-03-11 20:59:14,030 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-11 22:00:14] 2026-03-11 20:59:14,033 | INFO     | did not find any defunct processes belonging to 325796
[2026-03-11 22:00:14] 2026-03-11 20:59:14,037 | INFO     | did not find any defunct processes belonging to 325796
[2026-03-11 22:00:14] 2026-03-11 20:59:14,037 | INFO     | ready for new job
[2026-03-11 22:00:14] 2026-03-11 20:59:14,037 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-11 22:00:14] 2026-03-11 20:59:14,040 | INFO     | **************************************
[2026-03-11 22:00:14] 2026-03-11 20:59:14,040 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-11 22:00:14] 2026-03-11 20:59:14,040 | INFO     | **************************************
[2026-03-11 22:00:14] 2026-03-11 20:59:14,040 | INFO     | 
[2026-03-11 22:00:14] 2026-03-11 20:59:14,041 | INFO     | architecture information:
[2026-03-11 22:00:14] 2026-03-11 20:59:14,042 | INFO     | executing command: cat /etc/os-release
[2026-03-11 22:00:14] 2026-03-11 20:59:14,072 | INFO     | cat /etc/os-release:
[2026-03-11 22:00:14] NAME="CentOS Linux"
[2026-03-11 22:00:14] VERSION="7 (Core)"
[2026-03-11 22:00:14] ID="centos"
[2026-03-11 22:00:14] ID_LIKE="rhel fedora"
[2026-03-11 22:00:14] VERSION_ID="7"
[2026-03-11 22:00:14] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-11 22:00:14] ANSI_COLOR="0;31"
[2026-03-11 22:00:14] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-11 22:00:14] HOME_URL="https://www.centos.org/"
[2026-03-11 22:00:14] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-11 22:00:14] 
[2026-03-11 22:00:14] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-11 22:00:14] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-11 22:00:14] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-11 22:00:14] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-11 22:00:14] 
[2026-03-11 22:00:14] 2026-03-11 20:59:14,072 | INFO     | **************************************
[2026-03-11 22:00:14] 2026-03-11 20:59:14,576 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-11 22:00:14] 2026-03-11 20:59:14,587 | INFO     | sufficient remaining disk space (483386195968 B)
[2026-03-11 22:00:14] 2026-03-11 20:59:14,588 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-11 22:00:14] 2026-03-11 20:59:14,588 | INFO     | current server update state: UPDATING_FINAL
[2026-03-11 22:00:14] 2026-03-11 20:59:14,588 | INFO     | update_server=False
[2026-03-11 22:00:14] 2026-03-11 20:59:14,588 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-11 22:00:14] 2026-03-11 20:59:14,588 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-03-11 22:00:14] 2026-03-11 20:59:14,588 | INFO     | found 0 job(s) in 20 queues
[2026-03-11 22:00:14] 2026-03-11 20:59:14,588 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-11 22:00:14] 2026-03-11 20:59:14,588 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-11 22:00:14] 2026-03-11 20:59:14,588 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-11 22:00:14] 2026-03-11 20:59:14,588 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-11 22:00:14] 2026-03-11 20:59:14,588 | INFO     | aborting loop
[2026-03-11 22:00:14] 2026-03-11 20:59:14,622 | INFO     | all job control threads have been joined
[2026-03-11 22:00:14] 2026-03-11 20:59:14,823 | INFO     | all data control threads have been joined
[2026-03-11 22:00:14] 2026-03-11 20:59:15,225 | INFO     | all payload control threads have been joined
[2026-03-11 22:00:14] 2026-03-11 20:59:15,271 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-11 22:00:14] 2026-03-11 20:59:15,590 | INFO     | [job] job monitor thread has finished
[2026-03-11 22:00:14] 2026-03-11 20:59:15,592 | INFO     | [job] retrieve thread has finished
[2026-03-11 22:00:14] 2026-03-11 20:59:15,594 | INFO     | [job] queue monitor thread has finished
[2026-03-11 22:00:14] 2026-03-11 20:59:15,626 | INFO     | [job] control thread has finished
[2026-03-11 22:00:14] 2026-03-11 20:59:15,632 | INFO     | [payload] validate_post thread has finished
[2026-03-11 22:00:14] 2026-03-11 20:59:15,829 | INFO     | [data] control thread has finished
[2026-03-11 22:00:14] 2026-03-11 20:59:16,136 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-11 22:00:14] 2026-03-11 20:59:16,154 | INFO     | [job] create_data_payload thread has finished
[2026-03-11 22:00:14] 2026-03-11 20:59:16,218 | INFO     | [job] validate thread has finished
[2026-03-11 22:00:14] 2026-03-11 20:59:16,231 | INFO     | [payload] control thread has finished
[2026-03-11 22:00:14] 2026-03-11 20:59:16,437 | INFO     | [payload] failed_post thread has finished
[2026-03-11 22:00:14] 2026-03-11 20:59:16,573 | INFO     | [data] copytool_in thread has finished
[2026-03-11 22:00:14] 2026-03-11 20:59:16,604 | INFO     | [payload] execute_payloads thread has finished
[2026-03-11 22:00:14] 2026-03-11 20:59:16,681 | INFO     | [payload] validate_pre thread has finished
[2026-03-11 22:00:14] 2026-03-11 20:59:17,277 | INFO     | [data] copytool_out thread has finished
[2026-03-11 22:00:14] 2026-03-11 20:59:20,143 | INFO     | [data] queue_monitor thread has finished
[2026-03-11 22:00:14] 2026-03-11 20:59:24,903 | INFO     | job.realtimelogging is not enabled
[2026-03-11 22:00:14] 2026-03-11 20:59:25,909 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-11 22:00:14] 2026-03-11 21:00:09,813 | INFO     | [monitor] cgroup control has ended
[2026-03-11 22:00:14] 2026-03-11 21:00:09,826 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139751847331648)>', '<ExcThread(monitor, started 139750904157952)>']
[2026-03-11 22:00:14] 2026-03-11 21:00:09,881 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-11 22:00:14] 2026-03-11 21:00:09,882 | INFO     | [monitor] control thread has ended
[2026-03-11 22:00:14] 2026-03-11 21:00:14,852 | INFO     | all workflow threads have been joined
[2026-03-11 22:00:14] 2026-03-11 21:00:14,853 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-11 22:00:14] 2026-03-11 21:00:14,854 | INFO     | traces error code: 0
[2026-03-11 22:00:14] 2026-03-11 21:00:14,854 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-11 22:00:14] 2026-03-11 21:00:14,896 [wrapper] ==== pilot stdout END ====
[2026-03-11 22:00:14] 2026-03-11 21:00:14,899 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-11 22:00:14] 2026-03-11 21:00:14,902 [wrapper] pilotpid: 321391
[2026-03-11 22:00:14] 2026-03-11 21:00:14,904 [wrapper] Pilot exit status: 0
[2026-03-11 22:00:14] 2026-03-11 21:00:14,910 [wrapper] pandaids: 7049396983
[2026-03-11 22:00:14] 2026-03-11 21:00:14,923 [wrapper] cleanup supervisor_pilot  331601 321392
[2026-03-11 22:00:14] 2026-03-11 21:00:14,925 [wrapper] Test setup, not cleaning
[2026-03-11 22:00:14] 2026-03-11 21:00:14,927 [wrapper] apfmon messages muted
[2026-03-11 22:00:14] 2026-03-11 21:00:14,929 [wrapper] ==== wrapper stdout END ====
[2026-03-11 22:00:14] 2026-03-11 21:00:14,932 [wrapper] ==== wrapper stderr END ====
[2026-03-11 22:00:14]  *** Error codes and diagnostics ***
[2026-03-11 22:00:14]     "exeErrorCode": 0,
[2026-03-11 22:00:14]     "exeErrorDiag": "",
[2026-03-11 22:00:14]     "pilotErrorCode": 0,
[2026-03-11 22:00:14]     "pilotErrorDiag": "",
[2026-03-11 22:00:14]  *** Listing of results directory ***
[2026-03-11 22:00:15] total 488728
[2026-03-11 22:00:15] -rw-r--r-- 1 boinc boinc    585013 Mar 11 03:46 pilot3.tar.gz
[2026-03-11 22:00:15] -rwx------ 1 boinc boinc     36322 Mar 11 03:48 runpilot2-wrapper.sh
[2026-03-11 22:00:15] -rw-r--r-- 1 boinc boinc      5111 Mar 11 03:49 queuedata.json
[2026-03-11 22:00:15] -rw-r--r-- 1 boinc boinc       100 Mar 11 17:33 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-11 22:00:15] -rwxr-xr-x 1 boinc boinc      7986 Mar 11 17:33 run_atlas
[2026-03-11 22:00:15] -rw-r--r-- 1 boinc boinc       105 Mar 11 17:33 job.xml
[2026-03-11 22:00:15] -rw-r--r-- 2 boinc boinc 225391480 Mar 11 17:33 EVNT.48967057._000081.pool.root.1
[2026-03-11 22:00:15] -rw-r--r-- 2 boinc boinc    597514 Mar 11 17:33 input.tar.gz
[2026-03-11 22:00:15] -rw-r--r-- 2 boinc boinc     15845 Mar 11 17:33 start_atlas.sh
[2026-03-11 22:00:15] drwxrwx--x 2 boinc boinc      4096 Mar 11 17:33 shared
[2026-03-11 22:00:15] -rw-r--r-- 1 boinc boinc         0 Mar 11 17:33 boinc_setup_complete
[2026-03-11 22:00:15] -rw-r--r-- 1 boinc boinc      6205 Mar 11 17:33 init_data.xml
[2026-03-11 22:00:15] -rw-r--r-- 1 boinc boinc         0 Mar 11 17:33 boinc_lockfile
[2026-03-11 22:00:15] -rw-r--r-- 1 boinc boinc      2547 Mar 11 17:33 pandaJob.out
[2026-03-11 22:00:15] -rw------- 1 boinc boinc   1006251 Mar 11 17:33 agis_schedconf.cvmfs.json
[2026-03-11 22:00:15] -rw------- 1 boinc boinc       418 Mar 11 17:33 workernode_map.json
[2026-03-11 22:00:15] drwx------ 5 boinc boinc      4096 Mar 11 17:33 pilot3
[2026-03-11 22:00:15] -rw------- 1 boinc boinc 265895599 Mar 11 21:58 HITS.48967059._002140.pool.root.1
[2026-03-11 22:00:15] -rw-r--r-- 1 boinc boinc       530 Mar 11 21:58 boinc_task_state.xml
[2026-03-11 22:00:15] -rw------- 1 boinc boinc        95 Mar 11 21:58 pilot_heartbeat.json
[2026-03-11 22:00:15] -rw------- 1 boinc boinc      1015 Mar 11 21:59 memory_monitor_summary.json
[2026-03-11 22:00:15] -rw------- 1 boinc boinc   1511578 Mar 11 21:59 agis_ddmendpoints.agis.ALL.json
[2026-03-11 22:00:15] -rw------- 1 boinc boinc    389635 Mar 11 21:59 log.48967059._002140.job.log.tgz.1
[2026-03-11 22:00:15] -rw------- 1 boinc boinc      6298 Mar 11 21:59 heartbeat.json
[2026-03-11 22:00:15] -rw-r--r-- 1 boinc boinc      8192 Mar 11 21:59 boinc_mmap_file
[2026-03-11 22:00:15] -rw-r--r-- 1 boinc boinc        28 Mar 11 21:59 wrapper_checkpoint.txt
[2026-03-11 22:00:15] -rw------- 1 boinc boinc      4624 Mar 11 22:00 pilotlog.txt
[2026-03-11 22:00:15] -rw------- 1 boinc boinc   2235188 Mar 11 22:00 log.48967059._002140.job.log.1
[2026-03-11 22:00:15] -rw------- 1 boinc boinc       357 Mar 11 22:00 output.list
[2026-03-11 22:00:15] -rw-r--r-- 1 boinc boinc       620 Mar 11 22:00 runtime_log
[2026-03-11 22:00:15] -rw------- 1 boinc boinc   2641920 Mar 11 22:00 result.tar.gz
[2026-03-11 22:00:15] -rw-r--r-- 1 boinc boinc      8897 Mar 11 22:00 runtime_log.err
[2026-03-11 22:00:15] -rw------- 1 boinc boinc       661 Mar 11 22:00 cDGMDm2nOK9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmX7hLDmqVMOQn.diag
[2026-03-11 22:00:15] -rw-r--r-- 1 boinc boinc     11828 Mar 11 22:00 stderr.txt
[2026-03-11 22:00:15] HITS file was successfully produced:
[2026-03-11 22:00:15] -rw------- 1 boinc boinc 265895599 Mar 11 21:58 shared/HITS.pool.root.1
[2026-03-11 22:00:15]  *** Contents of shared directory: ***
[2026-03-11 22:00:15] total 482960
[2026-03-11 22:00:15] -rw-r--r-- 2 boinc boinc 225391480 Mar 11 17:33 ATLAS.root_0
[2026-03-11 22:00:15] -rw-r--r-- 2 boinc boinc    597514 Mar 11 17:33 input.tar.gz
[2026-03-11 22:00:15] -rw-r--r-- 2 boinc boinc     15845 Mar 11 17:33 start_atlas.sh
[2026-03-11 22:00:15] -rw------- 1 boinc boinc 265895599 Mar 11 21:58 HITS.pool.root.1
[2026-03-11 22:00:15] -rw------- 1 boinc boinc   2641920 Mar 11 22:00 result.tar.gz
22:00:16 (317363): run_atlas exited; CPU time 31383.800480
22:00:16 (317363): called boinc_finish(0)

</stderr_txt>
]]>

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