Stderr output

<core_client_version>8.3.0</core_client_version>
<![CDATA[
<stderr_txt>
03:22:58 (700343): wrapper (7.7.26015): starting
03:22:58 (700343): wrapper: running run_atlas (--nthreads 4)
[2026-03-11 03:22:58] Arguments: --nthreads 4
[2026-03-11 03:22:58] Threads: 4
[2026-03-11 03:22:58] Checking for CVMFS
[2026-03-11 03:22:58] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-11 03:23:00] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-11 03:23:00] Running cvmfs_config stat atlas.cern.ch
[2026-03-11 03:23:00] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-11 03:23:00] 2.13.3.0 1760492 7048 50592 157147 3 50 3535500 4096000 1832 130560 0 5632071 99.991 250038 823 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
[2026-03-11 03:23:00] CVMFS is ok
[2026-03-11 03:23:00] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-11 03:23:00] Small home clusters do not require a local http proxy but it is suggested if
[2026-03-11 03:23:00] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2026-03-11 03:23:00] Further information can be found at the LHC@home message board.
[2026-03-11 03:23:00] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-11 03:23:00] Checking for apptainer binary...
[2026-03-11 03:23:00] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-11 03:23:00] Running /usr/bin/apptainer --version
[2026-03-11 03:23:00] apptainer version 1.4.5
[2026-03-11 03:23:00] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-11 03:23:00] OptiPlex7070-Ubuntu
[2026-03-11 03:23:00] apptainer works
[2026-03-11 03:23:00] Set ATHENA_PROC_NUMBER=4
[2026-03-11 03:23:00] Set ATHENA_CORE_NUMBER=4
[2026-03-11 03:23:00] Starting ATLAS job with PandaID=7049376303
[2026-03-11 03:23:00] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/whitlerd/Desktop/BOINC/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-11 05:57:35]  *** The last 200 lines of the pilot log: ***
[2026-03-11 05:57:35] 2026-03-11 09:56:45,009 | INFO     | job 7049376303 has state=finished
[2026-03-11 05:57:35] 2026-03-11 09:56:45,009 | INFO     | preparing for final server update for job 7049376303 in state='finished'
[2026-03-11 05:57:35] 2026-03-11 09:56:45,009 | INFO     | reading metadata from: /home/whitlerd/Desktop/BOINC/slots/2/PanDA_Pilot-7049376303/jobReport.json
[2026-03-11 05:57:35] 2026-03-11 09:56:45,011 | INFO     | added worker_node to metadata from /home/whitlerd/Desktop/BOINC/slots/2/workernode_map.json
[2026-03-11 05:57:35] 2026-03-11 09:56:45,011 | INFO     | this job has now completed (state=finished)
[2026-03-11 05:57:35] 2026-03-11 09:56:45,011 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-11 05:57:35] 2026-03-11 09:56:45,011 | INFO     | log transfer has been attempted: DONE
[2026-03-11 05:57:35] 2026-03-11 09:56:45,011 | INFO     | job 7049376303 has finished - writing final server update
[2026-03-11 05:57:35] 2026-03-11 09:56:45,012 | INFO     | total number of processed events: 400 (read)
[2026-03-11 05:57:35] 2026-03-11 09:56:45,014 | INFO     | using path: /home/whitlerd/Desktop/BOINC/slots/2/PanDA_Pilot-7049376303/memory_monitor_summary.json (trf name=prmon)
[2026-03-11 05:57:35] 2026-03-11 09:56:45,014 | INFO     | extracted standard info from prmon json
[2026-03-11 05:57:35] 2026-03-11 09:56:45,015 | INFO     | extracted standard memory fields from prmon json
[2026-03-11 05:57:35] 2026-03-11 09:56:45,015 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-11 05:57:35] 2026-03-11 09:56:45,015 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-11 05:57:35] 2026-03-11 09:56:45,015 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-11 05:57:35] 2026-03-11 09:56:45,017 | INFO     | fitting pss+swap vs Time
[2026-03-11 05:57:35] 2026-03-11 09:56:45,017 | INFO     | sum of square deviations: 1067554900.0
[2026-03-11 05:57:35] 2026-03-11 09:56:45,018 | INFO     | sum of deviations: -39969344943.00001
[2026-03-11 05:57:35] 2026-03-11 09:56:45,018 | INFO     | mean x: 1773218387.0
[2026-03-11 05:57:35] 2026-03-11 09:56:45,018 | INFO     | mean y: 2423798.331125828
[2026-03-11 05:57:35] 2026-03-11 09:56:45,018 | INFO     | intersect: 66391868846.33108
[2026-03-11 05:57:35] 2026-03-11 09:56:45,019 | INFO     | chi2: 1.6427008423482854
[2026-03-11 05:57:35] 2026-03-11 09:56:45,019 | INFO     | sum of square deviations: 964976232.5
[2026-03-11 05:57:35] 2026-03-11 09:56:45,020 | INFO     | sum of deviations: -37700532750.500015
[2026-03-11 05:57:35] 2026-03-11 09:56:45,020 | INFO     | mean x: 1773218234.5
[2026-03-11 05:57:35] 2026-03-11 09:56:45,020 | INFO     | mean y: 2427172.52739726
[2026-03-11 05:57:35] 2026-03-11 09:56:45,020 | INFO     | intersect: 69280063110.10587
[2026-03-11 05:57:35] 2026-03-11 09:56:45,020 | INFO     | chi2: 1.6327796000081893
[2026-03-11 05:57:35] 2026-03-11 09:56:45,020 | INFO     | current chi2=1.6327796000081893 (change=0.603959167995152 %)
[2026-03-11 05:57:35] 2026-03-11 09:56:45,020 | INFO     | right removable region: 145
[2026-03-11 05:57:35] 2026-03-11 09:56:45,020 | INFO     | sum of square deviations: 964976232.5
[2026-03-11 05:57:35] 2026-03-11 09:56:45,021 | INFO     | sum of deviations: -55850515725.00001
[2026-03-11 05:57:35] 2026-03-11 09:56:45,021 | INFO     | mean x: 1773218539.5
[2026-03-11 05:57:35] 2026-03-11 09:56:45,021 | INFO     | mean y: 2446851.0684931506
[2026-03-11 05:57:35] 2026-03-11 09:56:45,021 | INFO     | intersect: 102632093663.85286
[2026-03-11 05:57:35] 2026-03-11 09:56:45,022 | INFO     | chi2: 0.3361133149529792
[2026-03-11 05:57:35] 2026-03-11 09:56:45,022 | INFO     | current chi2=0.3361133149529792 (change=79.53898200523864 %)
[2026-03-11 05:57:35] 2026-03-11 09:56:45,022 | INFO     | sum of square deviations: 869188390.0
[2026-03-11 05:57:35] 2026-03-11 09:56:45,022 | INFO     | sum of deviations: -50329214124.00001
[2026-03-11 05:57:35] 2026-03-11 09:56:45,023 | INFO     | mean x: 1773218692.0
[2026-03-11 05:57:35] 2026-03-11 09:56:45,023 | INFO     | mean y: 2438048.1063829786
[2026-03-11 05:57:35] 2026-03-11 09:56:45,023 | INFO     | intersect: 102678341528.99298
[2026-03-11 05:57:35] 2026-03-11 09:56:45,023 | INFO     | chi2: 0.33586786709948646
[2026-03-11 05:57:35] 2026-03-11 09:56:45,023 | INFO     | current chi2=0.33586786709948646 (change=0.07302532883205409 %)
[2026-03-11 05:57:35] 2026-03-11 09:56:45,023 | INFO     | left removable region: 20
[2026-03-11 05:57:35] 2026-03-11 09:56:45,023 | INFO     | sum of square deviations: 605592750.0
[2026-03-11 05:57:35] 2026-03-11 09:56:45,024 | INFO     | sum of deviations: -35768288362.99999
[2026-03-11 05:57:35] 2026-03-11 09:56:45,024 | INFO     | mean x: 1773218814.0
[2026-03-11 05:57:35] 2026-03-11 09:56:45,024 | INFO     | mean y: 2420398.112
[2026-03-11 05:57:35] 2026-03-11 09:56:45,024 | INFO     | intersect: 104734522738.91586
[2026-03-11 05:57:35] 2026-03-11 09:56:45,024 | INFO     | chi2: 0.3121788124188263
[2026-03-11 05:57:35] 2026-03-11 09:56:45,024 | INFO     | current memory leak: -59.06 B/s (using 125 data points, chi2=0.31)
[2026-03-11 05:57:35] 2026-03-11 09:56:45,025 | INFO     | could have reported an average CPU frequency of 3463 MHz (9 samples)
[2026-03-11 05:57:35] 2026-03-11 09:56:45,025 | INFO     | ..............................
[2026-03-11 05:57:35] 2026-03-11 09:56:45,025 | INFO     | . Timing measurements:
[2026-03-11 05:57:35] 2026-03-11 09:56:45,025 | INFO     | . get job = 0 s
[2026-03-11 05:57:35] 2026-03-11 09:56:45,025 | INFO     | . initial setup = 4 s
[2026-03-11 05:57:35] 2026-03-11 09:56:45,025 | INFO     | . payload setup = 3 s
[2026-03-11 05:57:35] 2026-03-11 09:56:45,025 | INFO     | . stage-in = 0 s
[2026-03-11 05:57:35] 2026-03-11 09:56:45,025 | INFO     | . payload execution = 9191 s
[2026-03-11 05:57:35] 2026-03-11 09:56:45,025 | INFO     | . stage-out = 0 s
[2026-03-11 05:57:35] 2026-03-11 09:56:45,025 | INFO     | . log creation = 0 s
[2026-03-11 05:57:35] 2026-03-11 09:56:45,026 | INFO     | ..............................
[2026-03-11 05:57:35] 2026-03-11 09:56:45,097 | INFO     | 
[2026-03-11 05:57:35] 2026-03-11 09:56:45,097 | INFO     | job summary report
[2026-03-11 05:57:35] 2026-03-11 09:56:45,097 | INFO     | --------------------------------------------------
[2026-03-11 05:57:35] 2026-03-11 09:56:45,097 | INFO     | PanDA job id: 7049376303
[2026-03-11 05:57:35] 2026-03-11 09:56:45,097 | INFO     | task id: 48967085
[2026-03-11 05:57:35] 2026-03-11 09:56:45,098 | INFO     | errors: (none)
[2026-03-11 05:57:35] 2026-03-11 09:56:45,098 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-11 05:57:35] 2026-03-11 09:56:45,098 | INFO     | pilot state: finished 
[2026-03-11 05:57:35] 2026-03-11 09:56:45,098 | INFO     | transexitcode: 0
[2026-03-11 05:57:35] 2026-03-11 09:56:45,098 | INFO     | exeerrorcode: 0
[2026-03-11 05:57:35] 2026-03-11 09:56:45,098 | INFO     | exeerrordiag: 
[2026-03-11 05:57:35] 2026-03-11 09:56:45,098 | INFO     | exitcode: 0
[2026-03-11 05:57:35] 2026-03-11 09:56:45,098 | INFO     | exitmsg: OK
[2026-03-11 05:57:35] 2026-03-11 09:56:45,098 | INFO     | cpuconsumptiontime: 35811 s
[2026-03-11 05:57:35] 2026-03-11 09:56:45,098 | INFO     | nevents: 400
[2026-03-11 05:57:35] 2026-03-11 09:56:45,098 | INFO     | neventsw: 0
[2026-03-11 05:57:35] 2026-03-11 09:56:45,098 | INFO     | pid: 709029
[2026-03-11 05:57:35] 2026-03-11 09:56:45,099 | INFO     | pgrp: 709029
[2026-03-11 05:57:35] 2026-03-11 09:56:45,099 | INFO     | corecount: 4
[2026-03-11 05:57:35] 2026-03-11 09:56:45,099 | INFO     | event service: False
[2026-03-11 05:57:35] 2026-03-11 09:56:45,099 | INFO     | sizes: {0: 2279819, 1: 2280280, 11: 2280280, 9199: 2308731, 9200: 2318043}
[2026-03-11 05:57:35] 2026-03-11 09:56:45,099 | INFO     | --------------------------------------------------
[2026-03-11 05:57:35] 2026-03-11 09:56:45,099 | INFO     | 
[2026-03-11 05:57:35] 2026-03-11 09:56:45,099 | INFO     | executing command: ls -lF /home/whitlerd/Desktop/BOINC/slots/2
[2026-03-11 05:57:35] 2026-03-11 09:56:45,114 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-11 05:57:35] 2026-03-11 09:56:45,115 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-11 05:57:35] 2026-03-11 09:56:45,115 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-11 05:57:35] 2026-03-11 09:56:45,115 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-11 05:57:35] 2026-03-11 09:56:45,115 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-11 05:57:35] 2026-03-11 09:56:45,115 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-11 05:57:35] 2026-03-11 09:56:45,115 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-11 05:57:35] 2026-03-11 09:56:45,115 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-11 05:57:35] 2026-03-11 09:56:45,115 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-11 05:57:35] 2026-03-11 09:56:45,115 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-11 05:57:35] 2026-03-11 09:56:45,115 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-11 05:57:35] 2026-03-11 09:56:45,116 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-11 05:57:35] 2026-03-11 09:56:45,116 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-11 05:57:35] 2026-03-11 09:56:45,116 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-11 05:57:35] 2026-03-11 09:56:45,116 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-11 05:57:35] 2026-03-11 09:56:45,116 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-11 05:57:35] 2026-03-11 09:56:45,116 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-11 05:57:35] 2026-03-11 09:56:45,116 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-11 05:57:35] 2026-03-11 09:56:45,116 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-11 05:57:35] 2026-03-11 09:56:45,116 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-11 05:57:35] 2026-03-11 09:56:45,116 | INFO     | job 7049376303 has completed (purged errors)
[2026-03-11 05:57:35] 2026-03-11 09:56:45,116 | INFO     | overall cleanup function is called
[2026-03-11 05:57:35] 2026-03-11 09:56:46,120 | INFO     | --- collectZombieJob: --- 10, [709029]
[2026-03-11 05:57:35] 2026-03-11 09:56:46,121 | INFO     | zombie collector waiting for pid 709029
[2026-03-11 05:57:35] 2026-03-11 09:56:46,121 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-11 05:57:35] 2026-03-11 09:56:46,121 | INFO     | collected zombie processes
[2026-03-11 05:57:35] 2026-03-11 09:56:46,121 | INFO     | will attempt to kill all subprocesses of pid=709029
[2026-03-11 05:57:35] 2026-03-11 09:56:46,256 | INFO     | process IDs to be killed: [709029] (in reverse order)
[2026-03-11 05:57:35] 2026-03-11 09:56:46,295 | WARNING  | found no corresponding commands to process id(s)
[2026-03-11 05:57:35] 2026-03-11 09:56:46,295 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-11 05:57:35] 2026-03-11 09:56:46,299 | INFO     | did not find any defunct processes belonging to 709029
[2026-03-11 05:57:35] 2026-03-11 09:56:46,302 | INFO     | did not find any defunct processes belonging to 709029
[2026-03-11 05:57:35] 2026-03-11 09:56:46,302 | INFO     | ready for new job
[2026-03-11 05:57:35] 2026-03-11 09:56:46,302 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-11 05:57:35] 2026-03-11 09:56:46,303 | INFO     | **************************************
[2026-03-11 05:57:35] 2026-03-11 09:56:46,303 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-11 05:57:35] 2026-03-11 09:56:46,303 | INFO     | **************************************
[2026-03-11 05:57:35] 2026-03-11 09:56:46,303 | INFO     | 
[2026-03-11 05:57:35] 2026-03-11 09:56:46,304 | INFO     | architecture information:
[2026-03-11 05:57:35] 2026-03-11 09:56:46,304 | INFO     | executing command: cat /etc/os-release
[2026-03-11 05:57:35] 2026-03-11 09:56:46,314 | INFO     | cat /etc/os-release:
[2026-03-11 05:57:35] NAME="CentOS Linux"
[2026-03-11 05:57:35] VERSION="7 (Core)"
[2026-03-11 05:57:35] ID="centos"
[2026-03-11 05:57:35] ID_LIKE="rhel fedora"
[2026-03-11 05:57:35] VERSION_ID="7"
[2026-03-11 05:57:35] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-11 05:57:35] ANSI_COLOR="0;31"
[2026-03-11 05:57:35] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-11 05:57:35] HOME_URL="https://www.centos.org/"
[2026-03-11 05:57:35] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-11 05:57:35] 
[2026-03-11 05:57:35] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-11 05:57:35] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-11 05:57:35] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-11 05:57:35] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-11 05:57:35] 
[2026-03-11 05:57:35] 2026-03-11 09:56:46,315 | INFO     | **************************************
[2026-03-11 05:57:35] 2026-03-11 09:56:46,818 | INFO     | executing command: df -mP /home/whitlerd/Desktop/BOINC/slots/2
[2026-03-11 05:57:35] 2026-03-11 09:56:46,829 | INFO     | sufficient remaining disk space (411110998016 B)
[2026-03-11 05:57:35] 2026-03-11 09:56:46,829 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-11 05:57:35] 2026-03-11 09:56:46,829 | INFO     | current server update state: UPDATING_FINAL
[2026-03-11 05:57:35] 2026-03-11 09:56:46,830 | INFO     | update_server=False
[2026-03-11 05:57:35] 2026-03-11 09:56:46,830 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-11 05:57:35] 2026-03-11 09:56:46,830 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-11 05:57:35] 2026-03-11 09:56:46,830 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-11 05:57:35] 2026-03-11 09:56:47,168 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-03-11 05:57:35] 2026-03-11 09:56:47,168 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-03-11 05:57:35] 2026-03-11 09:56:47,168 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-11 05:57:35] 2026-03-11 09:56:47,168 | INFO     | will abort loop
[2026-03-11 05:57:35] 2026-03-11 09:56:47,815 | INFO     | all payload control threads have been joined
[2026-03-11 05:57:35] 2026-03-11 09:56:47,820 | INFO     | all job control threads have been joined
[2026-03-11 05:57:35] 2026-03-11 09:56:47,835 | INFO     | [job] queue monitor thread has finished
[2026-03-11 05:57:35] 2026-03-11 09:56:47,835 | INFO     | [job] retrieve thread has finished
[2026-03-11 05:57:35] 2026-03-11 09:56:47,911 | INFO     | all data control threads have been joined
[2026-03-11 05:57:35] 2026-03-11 09:56:47,941 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-11 05:57:35] 2026-03-11 09:56:48,173 | INFO     | [job] job monitor thread has finished
[2026-03-11 05:57:35] 2026-03-11 09:56:48,257 | INFO     | [payload] validate_post thread has finished
[2026-03-11 05:57:35] 2026-03-11 09:56:48,459 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-11 05:57:35] 2026-03-11 09:56:48,820 | INFO     | [payload] control thread has finished
[2026-03-11 05:57:35] 2026-03-11 09:56:48,825 | INFO     | [job] control thread has finished
[2026-03-11 05:57:35] 2026-03-11 09:56:48,869 | INFO     | [job] validate thread has finished
[2026-03-11 05:57:35] 2026-03-11 09:56:48,916 | INFO     | [data] control thread has finished
[2026-03-11 05:57:35] 2026-03-11 09:56:49,077 | INFO     | [payload] execute_payloads thread has finished
[2026-03-11 05:57:35] 2026-03-11 09:56:49,096 | INFO     | [job] create_data_payload thread has finished
[2026-03-11 05:57:35] 2026-03-11 09:56:49,194 | INFO     | [payload] validate_pre thread has finished
[2026-03-11 05:57:35] 2026-03-11 09:56:49,267 | INFO     | [payload] failed_post thread has finished
[2026-03-11 05:57:35] 2026-03-11 09:56:49,335 | INFO     | [data] copytool_in thread has finished
[2026-03-11 05:57:35] 2026-03-11 09:56:49,946 | INFO     | [data] copytool_out thread has finished
[2026-03-11 05:57:35] 2026-03-11 09:56:50,836 | INFO     | [data] queue_monitor thread has finished
[2026-03-11 05:57:35] 2026-03-11 09:57:17,223 | INFO     | PID=704489 has CPU usage=5.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-11 05:57:35] 2026-03-11 09:57:17,223 | INFO     | .. there are 3 such processes running
[2026-03-11 05:57:35] 2026-03-11 09:57:17,224 | INFO     | found 0 job(s) in 20 queues
[2026-03-11 05:57:35] 2026-03-11 09:57:17,224 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-11 05:57:35] 2026-03-11 09:57:17,224 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-11 05:57:35] 2026-03-11 09:57:28,759 | INFO     | [monitor] cgroup control has ended
[2026-03-11 05:57:35] 2026-03-11 09:57:30,465 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 131493776074560)>', '<ExcThread(monitor, started 131493259089664)>']
[2026-03-11 05:57:35] 2026-03-11 09:57:31,294 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-11 05:57:35] 2026-03-11 09:57:31,294 | INFO     | [monitor] control thread has ended
[2026-03-11 05:57:35] 2026-03-11 09:57:35,490 | INFO     | all workflow threads have been joined
[2026-03-11 05:57:35] 2026-03-11 09:57:35,490 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-11 05:57:35] 2026-03-11 09:57:35,490 | INFO     | traces error code: 0
[2026-03-11 05:57:35] 2026-03-11 09:57:35,490 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-11 05:57:35] 2026-03-11 09:57:35,566 [wrapper] ==== pilot stdout END ====
[2026-03-11 05:57:35] 2026-03-11 09:57:35,568 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-11 05:57:35] 2026-03-11 09:57:35,569 [wrapper] pilotpid: 704489
[2026-03-11 05:57:35] 2026-03-11 09:57:35,572 [wrapper] Pilot exit status: 0
[2026-03-11 05:57:35] 2026-03-11 09:57:35,578 [wrapper] pandaids: 7049376303
[2026-03-11 05:57:35] 2026-03-11 09:57:35,599 [wrapper] cleanup supervisor_pilot  767577 704490
[2026-03-11 05:57:35] 2026-03-11 09:57:35,601 [wrapper] Test setup, not cleaning
[2026-03-11 05:57:35] 2026-03-11 09:57:35,603 [wrapper] apfmon messages muted
[2026-03-11 05:57:35] 2026-03-11 09:57:35,604 [wrapper] ==== wrapper stdout END ====
[2026-03-11 05:57:35] 2026-03-11 09:57:35,606 [wrapper] ==== wrapper stderr END ====
[2026-03-11 05:57:35]  *** Error codes and diagnostics ***
[2026-03-11 05:57:35]     "exeErrorCode": 0,
[2026-03-11 05:57:35]     "exeErrorDiag": "",
[2026-03-11 05:57:35]     "pilotErrorCode": 0,
[2026-03-11 05:57:35]     "pilotErrorDiag": "",
[2026-03-11 05:57:35]  *** Listing of results directory ***
[2026-03-11 05:57:35] total 400708
[2026-03-11 05:57:35] -rw-r--r-- 1 whitlerd whitlerd    585013 Mar 10 22:46 pilot3.tar.gz
[2026-03-11 05:57:35] -rwx------ 1 whitlerd whitlerd     36322 Mar 10 22:47 runpilot2-wrapper.sh
[2026-03-11 05:57:35] -rw-r--r-- 1 whitlerd whitlerd      5111 Mar 10 22:49 queuedata.json
[2026-03-11 05:57:35] -rw-rw-r-- 1 whitlerd whitlerd       100 Mar 11 03:22 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-11 05:57:35] -rwxr-xr-x 1 whitlerd whitlerd      7986 Mar 11 03:22 run_atlas
[2026-03-11 05:57:35] -rw-rw-r-- 1 whitlerd whitlerd       105 Mar 11 03:22 job.xml
[2026-03-11 05:57:35] -rw-r--r-- 2 whitlerd whitlerd 212453974 Mar 11 03:22 EVNT.48967083._000203.pool.root.1
[2026-03-11 05:57:35] -rw-r--r-- 2 whitlerd whitlerd     15845 Mar 11 03:22 start_atlas.sh
[2026-03-11 05:57:35] drwxrwx--x 2 whitlerd whitlerd      4096 Mar 11 03:22 shared
[2026-03-11 05:57:35] -rw-r--r-- 2 whitlerd whitlerd    597517 Mar 11 03:22 input.tar.gz
[2026-03-11 05:57:35] -rw-rw-r-- 1 whitlerd whitlerd      6467 Mar 11 03:22 init_data.xml
[2026-03-11 05:57:35] -rw-rw-r-- 1 whitlerd whitlerd         0 Mar 11 03:22 boinc_setup_complete
[2026-03-11 05:57:35] -rw-rw-r-- 1 whitlerd whitlerd         0 Mar 11 03:22 boinc_lockfile
[2026-03-11 05:57:35] -rw-rw-r-- 1 whitlerd whitlerd      2561 Mar 11 03:23 pandaJob.out
[2026-03-11 05:57:35] -rw------- 1 whitlerd whitlerd   1006644 Mar 11 03:23 agis_schedconf.cvmfs.json
[2026-03-11 05:57:35] -rw------- 1 whitlerd whitlerd   1511578 Mar 11 03:23 agis_ddmendpoints.agis.ALL.json
[2026-03-11 05:57:35] -rw------- 1 whitlerd whitlerd       439 Mar 11 03:23 workernode_map.json
[2026-03-11 05:57:35] drwx------ 5 whitlerd whitlerd      4096 Mar 11 03:23 pilot3
[2026-03-11 05:57:35] -rw-rw-r-- 1 whitlerd whitlerd       529 Mar 11 05:56 boinc_task_state.xml
[2026-03-11 05:57:35] -rw------- 1 whitlerd whitlerd 190586297 Mar 11 05:56 HITS.48967085._005056.pool.root.1
[2026-03-11 05:57:35] -rw------- 1 whitlerd whitlerd        95 Mar 11 05:56 pilot_heartbeat.json
[2026-03-11 05:57:35] -rw------- 1 whitlerd whitlerd      1030 Mar 11 05:56 memory_monitor_summary.json
[2026-03-11 05:57:35] -rw------- 1 whitlerd whitlerd    323772 Mar 11 05:56 log.48967085._005056.job.log.tgz.1
[2026-03-11 05:57:35] -rw------- 1 whitlerd whitlerd      6368 Mar 11 05:56 heartbeat.json
[2026-03-11 05:57:35] -rw-rw-r-- 1 whitlerd whitlerd      8192 Mar 11 05:57 boinc_mmap_file
[2026-03-11 05:57:35] -rw-rw-r-- 1 whitlerd whitlerd        27 Mar 11 05:57 wrapper_checkpoint.txt
[2026-03-11 05:57:35] -rw------- 1 whitlerd whitlerd      5019 Mar 11 05:57 pilotlog.txt
[2026-03-11 05:57:35] -rw------- 1 whitlerd whitlerd   1351237 Mar 11 05:57 log.48967085._005056.job.log.1
[2026-03-11 05:57:35] -rw------- 1 whitlerd whitlerd       357 Mar 11 05:57 output.list
[2026-03-11 05:57:35] -rw-rw-r-- 1 whitlerd whitlerd       620 Mar 11 05:57 runtime_log
[2026-03-11 05:57:35] -rw------- 1 whitlerd whitlerd   1689600 Mar 11 05:57 result.tar.gz
[2026-03-11 05:57:35] -rw------- 1 whitlerd whitlerd       658 Mar 11 05:57 XM6KDm4mOK9n9Rq4apOajLDm4fhM0noT9bVooX4SDmXGfLDmaf73nm.diag
[2026-03-11 05:57:35] -rw-rw-r-- 1 whitlerd whitlerd      9054 Mar 11 05:57 runtime_log.err
[2026-03-11 05:57:35] -rw-rw-r-- 1 whitlerd whitlerd     21346 Mar 11 05:57 stderr.txt
[2026-03-11 05:57:35] HITS file was successfully produced:
[2026-03-11 05:57:35] -rw------- 1 whitlerd whitlerd 190586297 Mar 11 05:56 shared/HITS.pool.root.1
[2026-03-11 05:57:35]  *** Contents of shared directory: ***
[2026-03-11 05:57:35] total 395856
[2026-03-11 05:57:35] -rw-r--r-- 2 whitlerd whitlerd 212453974 Mar 11 03:22 ATLAS.root_0
[2026-03-11 05:57:35] -rw-r--r-- 2 whitlerd whitlerd     15845 Mar 11 03:22 start_atlas.sh
[2026-03-11 05:57:35] -rw-r--r-- 2 whitlerd whitlerd    597517 Mar 11 03:22 input.tar.gz
[2026-03-11 05:57:35] -rw------- 1 whitlerd whitlerd 190586297 Mar 11 05:56 HITS.pool.root.1
[2026-03-11 05:57:35] -rw------- 1 whitlerd whitlerd   1689600 Mar 11 05:57 result.tar.gz
05:57:36 (700343): run_atlas exited; CPU time 35969.033031
05:57:36 (700343): called boinc_finish(0)

</stderr_txt>
]]>

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