Stderr output

<core_client_version>8.3.0</core_client_version>
<![CDATA[
<stderr_txt>
01:56:44 (671854): wrapper (7.7.26015): starting
01:56:44 (671854): wrapper: running run_atlas (--nthreads 4)
[2026-03-11 01:56:44] Arguments: --nthreads 4
[2026-03-11 01:56:44] Threads: 4
[2026-03-11 01:56:44] Checking for CVMFS
[2026-03-11 01:56:44] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-11 01:56:44] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-11 01:56:44] Running cvmfs_config stat atlas.cern.ch
[2026-03-11 01:56:44] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-11 01:56:44] 2.13.3.0 1760492 6962 51016 157144 1 188 3529502 4096000 1823 130560 0 5590009 99.991 247351 821 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
[2026-03-11 01:56:44] CVMFS is ok
[2026-03-11 01:56:44] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-11 01:56:44] Small home clusters do not require a local http proxy but it is suggested if
[2026-03-11 01:56:44] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2026-03-11 01:56:44] Further information can be found at the LHC@home message board.
[2026-03-11 01:56:44] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-11 01:56:44] Checking for apptainer binary...
[2026-03-11 01:56:44] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-11 01:56:44] Running /usr/bin/apptainer --version
[2026-03-11 01:56:44] apptainer version 1.4.5
[2026-03-11 01:56:44] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-11 01:56:44] OptiPlex7070-Ubuntu
[2026-03-11 01:56:44] apptainer works
[2026-03-11 01:56:44] Set ATHENA_PROC_NUMBER=4
[2026-03-11 01:56:44] Set ATHENA_CORE_NUMBER=4
[2026-03-11 01:56:44] Starting ATLAS job with PandaID=7049377017
[2026-03-11 01:56:44] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/whitlerd/Desktop/BOINC/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-11 04:38:16]  *** The last 200 lines of the pilot log: ***
[2026-03-11 04:38:16] 2026-03-11 08:37:37,103 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-11 04:38:16] 2026-03-11 08:37:37,620 | INFO     | job 7049377017 has state=finished
[2026-03-11 04:38:16] 2026-03-11 08:37:37,620 | INFO     | preparing for final server update for job 7049377017 in state='finished'
[2026-03-11 04:38:16] 2026-03-11 08:37:37,620 | INFO     | reading metadata from: /home/whitlerd/Desktop/BOINC/slots/3/PanDA_Pilot-7049377017/jobReport.json
[2026-03-11 04:38:16] 2026-03-11 08:37:37,622 | INFO     | added worker_node to metadata from /home/whitlerd/Desktop/BOINC/slots/3/workernode_map.json
[2026-03-11 04:38:16] 2026-03-11 08:37:37,622 | INFO     | this job has now completed (state=finished)
[2026-03-11 04:38:16] 2026-03-11 08:37:37,622 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-11 04:38:16] 2026-03-11 08:37:37,622 | INFO     | log transfer has been attempted: DONE
[2026-03-11 04:38:16] 2026-03-11 08:37:37,623 | INFO     | job 7049377017 has finished - writing final server update
[2026-03-11 04:38:16] 2026-03-11 08:37:37,623 | INFO     | total number of processed events: 400 (read)
[2026-03-11 04:38:16] 2026-03-11 08:37:37,625 | INFO     | using path: /home/whitlerd/Desktop/BOINC/slots/3/PanDA_Pilot-7049377017/memory_monitor_summary.json (trf name=prmon)
[2026-03-11 04:38:16] 2026-03-11 08:37:37,626 | INFO     | extracted standard info from prmon json
[2026-03-11 04:38:16] 2026-03-11 08:37:37,626 | INFO     | extracted standard memory fields from prmon json
[2026-03-11 04:38:16] 2026-03-11 08:37:37,626 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-11 04:38:16] 2026-03-11 08:37:37,626 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-11 04:38:16] 2026-03-11 08:37:37,626 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-11 04:38:16] 2026-03-11 08:37:37,629 | INFO     | fitting pss+swap vs Time
[2026-03-11 04:38:16] 2026-03-11 08:37:37,629 | INFO     | sum of square deviations: 1223016419.5
[2026-03-11 04:38:16] 2026-03-11 08:37:37,630 | INFO     | sum of deviations: 8368605371.999999
[2026-03-11 04:38:16] 2026-03-11 08:37:37,630 | INFO     | mean x: 1773213420.5
[2026-03-11 04:38:16] 2026-03-11 08:37:37,630 | INFO     | mean y: 2312431.3037974685
[2026-03-11 04:38:16] 2026-03-11 08:37:37,630 | INFO     | intersect: -12131067889.596134
[2026-03-11 04:38:16] 2026-03-11 08:37:37,630 | INFO     | chi2: 1.418645342886195
[2026-03-11 04:38:16] 2026-03-11 08:37:37,630 | INFO     | sum of square deviations: 1110539892.0
[2026-03-11 04:38:16] 2026-03-11 08:37:37,631 | INFO     | sum of deviations: 7996368731.999996
[2026-03-11 04:38:16] 2026-03-11 08:37:37,631 | INFO     | mean x: 1773213268.0
[2026-03-11 04:38:16] 2026-03-11 08:37:37,631 | INFO     | mean y: 2311926.2810457516
[2026-03-11 04:38:16] 2026-03-11 08:37:37,631 | INFO     | intersect: -12765592435.863857
[2026-03-11 04:38:16] 2026-03-11 08:37:37,632 | INFO     | chi2: 1.4196880795790991
[2026-03-11 04:38:16] 2026-03-11 08:37:37,632 | INFO     | current chi2=1.4196880795790991 (change=-0.07350228146400589 %)
[2026-03-11 04:38:16] 2026-03-11 08:37:37,632 | INFO     | right removable region: 152
[2026-03-11 04:38:16] 2026-03-11 08:37:37,632 | INFO     | sum of square deviations: 1110539892.0
[2026-03-11 04:38:16] 2026-03-11 08:37:37,633 | INFO     | sum of deviations: -10074210511.999992
[2026-03-11 04:38:16] 2026-03-11 08:37:37,633 | INFO     | mean x: 1773213573.0
[2026-03-11 04:38:16] 2026-03-11 08:37:37,633 | INFO     | mean y: 2336945.431372549
[2026-03-11 04:38:16] 2026-03-11 08:37:37,633 | INFO     | intersect: 16087960654.964596
[2026-03-11 04:38:16] 2026-03-11 08:37:37,633 | INFO     | chi2: 0.06665221545660223
[2026-03-11 04:38:16] 2026-03-11 08:37:37,633 | INFO     | current chi2=0.06665221545660223 (change=95.3016999075329 %)
[2026-03-11 04:38:16] 2026-03-11 08:37:37,634 | INFO     | sum of square deviations: 1005179777.0
[2026-03-11 04:38:16] 2026-03-11 08:37:37,634 | INFO     | sum of deviations: -6679446930.0
[2026-03-11 04:38:16] 2026-03-11 08:37:37,634 | INFO     | mean x: 1773213725.5
[2026-03-11 04:38:16] 2026-03-11 08:37:37,634 | INFO     | mean y: 2332023.6621621624
[2026-03-11 04:38:16] 2026-03-11 08:37:37,635 | INFO     | intersect: 11785385409.767878
[2026-03-11 04:38:16] 2026-03-11 08:37:37,635 | INFO     | chi2: 0.05585056323601097
[2026-03-11 04:38:16] 2026-03-11 08:37:37,635 | INFO     | current chi2=0.05585056323601097 (change=16.205991273649865 %)
[2026-03-11 04:38:16] 2026-03-11 08:37:37,635 | INFO     | left removable region: 20
[2026-03-11 04:38:16] 2026-03-11 08:37:37,635 | INFO     | sum of square deviations: 713140813.0
[2026-03-11 04:38:16] 2026-03-11 08:37:37,636 | INFO     | sum of deviations: 796497282.5
[2026-03-11 04:38:16] 2026-03-11 08:37:37,636 | INFO     | mean x: 1773213847.5
[2026-03-11 04:38:16] 2026-03-11 08:37:37,636 | INFO     | mean y: 2319302.765151515
[2026-03-11 04:38:16] 2026-03-11 08:37:37,636 | INFO     | intersect: -1978159145.6406887
[2026-03-11 04:38:16] 2026-03-11 08:37:37,636 | INFO     | chi2: 0.007781507941636372
[2026-03-11 04:38:16] 2026-03-11 08:37:37,636 | INFO     | current memory leak: 1.12 B/s (using 132 data points, chi2=0.01)
[2026-03-11 04:38:16] 2026-03-11 08:37:37,637 | INFO     | could have reported an average CPU frequency of 3574 MHz (9 samples)
[2026-03-11 04:38:16] 2026-03-11 08:37:37,637 | INFO     | ..............................
[2026-03-11 04:38:16] 2026-03-11 08:37:37,637 | INFO     | . Timing measurements:
[2026-03-11 04:38:16] 2026-03-11 08:37:37,637 | INFO     | . get job = 0 s
[2026-03-11 04:38:16] 2026-03-11 08:37:37,637 | INFO     | . initial setup = 5 s
[2026-03-11 04:38:16] 2026-03-11 08:37:37,637 | INFO     | . payload setup = 3 s
[2026-03-11 04:38:16] 2026-03-11 08:37:37,637 | INFO     | . stage-in = 0 s
[2026-03-11 04:38:16] 2026-03-11 08:37:37,637 | INFO     | . payload execution = 9625 s
[2026-03-11 04:38:16] 2026-03-11 08:37:37,637 | INFO     | . stage-out = 0 s
[2026-03-11 04:38:16] 2026-03-11 08:37:37,637 | INFO     | . log creation = 0 s
[2026-03-11 04:38:16] 2026-03-11 08:37:37,638 | INFO     | ..............................
[2026-03-11 04:38:16] 2026-03-11 08:37:37,737 | INFO     | 
[2026-03-11 04:38:16] 2026-03-11 08:37:37,737 | INFO     | job summary report
[2026-03-11 04:38:16] 2026-03-11 08:37:37,737 | INFO     | --------------------------------------------------
[2026-03-11 04:38:16] 2026-03-11 08:37:37,737 | INFO     | PanDA job id: 7049377017
[2026-03-11 04:38:16] 2026-03-11 08:37:37,737 | INFO     | task id: 48967085
[2026-03-11 04:38:16] 2026-03-11 08:37:37,737 | INFO     | errors: (none)
[2026-03-11 04:38:16] 2026-03-11 08:37:37,737 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-11 04:38:16] 2026-03-11 08:37:37,737 | INFO     | pilot state: finished 
[2026-03-11 04:38:16] 2026-03-11 08:37:37,737 | INFO     | transexitcode: 0
[2026-03-11 04:38:16] 2026-03-11 08:37:37,737 | INFO     | exeerrorcode: 0
[2026-03-11 04:38:16] 2026-03-11 08:37:37,737 | INFO     | exeerrordiag: 
[2026-03-11 04:38:16] 2026-03-11 08:37:37,737 | INFO     | exitcode: 0
[2026-03-11 04:38:16] 2026-03-11 08:37:37,738 | INFO     | exitmsg: OK
[2026-03-11 04:38:16] 2026-03-11 08:37:37,738 | INFO     | cpuconsumptiontime: 37519 s
[2026-03-11 04:38:16] 2026-03-11 08:37:37,738 | INFO     | nevents: 400
[2026-03-11 04:38:16] 2026-03-11 08:37:37,738 | INFO     | neventsw: 0
[2026-03-11 04:38:16] 2026-03-11 08:37:37,738 | INFO     | pid: 680163
[2026-03-11 04:38:16] 2026-03-11 08:37:37,738 | INFO     | pgrp: 680163
[2026-03-11 04:38:16] 2026-03-11 08:37:37,738 | INFO     | corecount: 4
[2026-03-11 04:38:16] 2026-03-11 08:37:37,738 | INFO     | event service: False
[2026-03-11 04:38:16] 2026-03-11 08:37:37,738 | INFO     | sizes: {0: 2280252, 11: 2280252, 9628: 2308871, 9630: 2317897, 9631: 2317953, 9632: 2318211}
[2026-03-11 04:38:16] 2026-03-11 08:37:37,738 | INFO     | --------------------------------------------------
[2026-03-11 04:38:16] 2026-03-11 08:37:37,738 | INFO     | 
[2026-03-11 04:38:16] 2026-03-11 08:37:37,738 | INFO     | executing command: ls -lF /home/whitlerd/Desktop/BOINC/slots/3
[2026-03-11 04:38:16] 2026-03-11 08:37:37,752 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-11 04:38:16] 2026-03-11 08:37:37,752 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-11 04:38:16] 2026-03-11 08:37:37,753 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-11 04:38:16] 2026-03-11 08:37:37,753 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-11 04:38:16] 2026-03-11 08:37:37,753 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-11 04:38:16] 2026-03-11 08:37:37,753 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-11 04:38:16] 2026-03-11 08:37:37,753 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-11 04:38:16] 2026-03-11 08:37:37,753 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-11 04:38:16] 2026-03-11 08:37:37,753 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-11 04:38:16] 2026-03-11 08:37:37,753 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-11 04:38:16] 2026-03-11 08:37:37,753 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-11 04:38:16] 2026-03-11 08:37:37,753 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-11 04:38:16] 2026-03-11 08:37:37,753 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-11 04:38:16] 2026-03-11 08:37:37,754 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-11 04:38:16] 2026-03-11 08:37:37,754 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-11 04:38:16] 2026-03-11 08:37:37,754 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-11 04:38:16] 2026-03-11 08:37:37,754 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-11 04:38:16] 2026-03-11 08:37:37,754 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-11 04:38:16] 2026-03-11 08:37:37,754 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-11 04:38:16] 2026-03-11 08:37:37,754 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-11 04:38:16] 2026-03-11 08:37:37,754 | INFO     | job 7049377017 has completed (purged errors)
[2026-03-11 04:38:16] 2026-03-11 08:37:37,754 | INFO     | overall cleanup function is called
[2026-03-11 04:38:16] 2026-03-11 08:37:38,758 | INFO     | --- collectZombieJob: --- 10, [680163]
[2026-03-11 04:38:16] 2026-03-11 08:37:38,758 | INFO     | zombie collector waiting for pid 680163
[2026-03-11 04:38:16] 2026-03-11 08:37:38,758 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-11 04:38:16] 2026-03-11 08:37:38,758 | INFO     | collected zombie processes
[2026-03-11 04:38:16] 2026-03-11 08:37:38,758 | INFO     | will attempt to kill all subprocesses of pid=680163
[2026-03-11 04:38:16] 2026-03-11 08:37:38,896 | INFO     | process IDs to be killed: [680163] (in reverse order)
[2026-03-11 04:38:16] 2026-03-11 08:37:38,935 | WARNING  | found no corresponding commands to process id(s)
[2026-03-11 04:38:16] 2026-03-11 08:37:38,936 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-11 04:38:16] 2026-03-11 08:37:38,939 | INFO     | did not find any defunct processes belonging to 680163
[2026-03-11 04:38:16] 2026-03-11 08:37:38,942 | INFO     | did not find any defunct processes belonging to 680163
[2026-03-11 04:38:16] 2026-03-11 08:37:38,942 | INFO     | ready for new job
[2026-03-11 04:38:16] 2026-03-11 08:37:38,942 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-11 04:38:16] 2026-03-11 08:37:38,943 | INFO     | **************************************
[2026-03-11 04:38:16] 2026-03-11 08:37:38,943 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-11 04:38:16] 2026-03-11 08:37:38,944 | INFO     | **************************************
[2026-03-11 04:38:16] 2026-03-11 08:37:38,944 | INFO     | 
[2026-03-11 04:38:16] 2026-03-11 08:37:38,944 | INFO     | architecture information:
[2026-03-11 04:38:16] 2026-03-11 08:37:38,945 | INFO     | executing command: cat /etc/os-release
[2026-03-11 04:38:16] 2026-03-11 08:37:38,962 | INFO     | cat /etc/os-release:
[2026-03-11 04:38:16] NAME="CentOS Linux"
[2026-03-11 04:38:16] VERSION="7 (Core)"
[2026-03-11 04:38:16] ID="centos"
[2026-03-11 04:38:16] ID_LIKE="rhel fedora"
[2026-03-11 04:38:16] VERSION_ID="7"
[2026-03-11 04:38:16] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-11 04:38:16] ANSI_COLOR="0;31"
[2026-03-11 04:38:16] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-11 04:38:16] HOME_URL="https://www.centos.org/"
[2026-03-11 04:38:16] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-11 04:38:16] 
[2026-03-11 04:38:16] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-11 04:38:16] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-11 04:38:16] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-11 04:38:16] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-11 04:38:16] 
[2026-03-11 04:38:16] 2026-03-11 08:37:38,963 | INFO     | **************************************
[2026-03-11 04:38:16] 2026-03-11 08:37:39,465 | INFO     | executing command: df -mP /home/whitlerd/Desktop/BOINC/slots/3
[2026-03-11 04:38:16] 2026-03-11 08:37:39,475 | INFO     | sufficient remaining disk space (411234729984 B)
[2026-03-11 04:38:16] 2026-03-11 08:37:39,475 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-11 04:38:16] 2026-03-11 08:37:39,476 | INFO     | current server update state: UPDATING_FINAL
[2026-03-11 04:38:16] 2026-03-11 08:37:39,476 | INFO     | update_server=False
[2026-03-11 04:38:16] 2026-03-11 08:37:39,476 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-11 04:38:16] 2026-03-11 08:37:39,476 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-11 04:38:16] 2026-03-11 08:37:39,476 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-11 04:38:16] 2026-03-11 08:37:40,310 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-11 04:38:16] 2026-03-11 08:37:40,310 | INFO     | aborting loop
[2026-03-11 04:38:16] 2026-03-11 08:37:40,312 | INFO     | all job control threads have been joined
[2026-03-11 04:38:16] 2026-03-11 08:37:40,317 | INFO     | all payload control threads have been joined
[2026-03-11 04:38:16] 2026-03-11 08:37:40,429 | INFO     | all data control threads have been joined
[2026-03-11 04:38:16] 2026-03-11 08:37:40,481 | INFO     | [job] queue monitor thread has finished
[2026-03-11 04:38:16] 2026-03-11 08:37:40,481 | INFO     | [job] retrieve thread has finished
[2026-03-11 04:38:16] 2026-03-11 08:37:40,513 | INFO     | [job] create_data_payload thread has finished
[2026-03-11 04:38:16] 2026-03-11 08:37:40,604 | INFO     | [payload] validate_pre thread has finished
[2026-03-11 04:38:16] 2026-03-11 08:37:40,699 | INFO     | [data] copytool_in thread has finished
[2026-03-11 04:38:16] 2026-03-11 08:37:40,944 | INFO     | [payload] failed_post thread has finished
[2026-03-11 04:38:16] 2026-03-11 08:37:40,975 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-11 04:38:16] 2026-03-11 08:37:41,226 | INFO     | [payload] execute_payloads thread has finished
[2026-03-11 04:38:16] 2026-03-11 08:37:41,315 | INFO     | [job] job monitor thread has finished
[2026-03-11 04:38:16] 2026-03-11 08:37:41,317 | INFO     | [job] control thread has finished
[2026-03-11 04:38:16] 2026-03-11 08:37:41,322 | INFO     | [payload] control thread has finished
[2026-03-11 04:38:16] 2026-03-11 08:37:41,434 | INFO     | [data] control thread has finished
[2026-03-11 04:38:16] 2026-03-11 08:37:41,698 | INFO     | [payload] validate_post thread has finished
[2026-03-11 04:38:16] 2026-03-11 08:37:41,875 | INFO     | [job] validate thread has finished
[2026-03-11 04:38:16] 2026-03-11 08:37:42,981 | INFO     | [data] copytool_out thread has finished
[2026-03-11 04:38:16] 2026-03-11 08:37:43,482 | INFO     | [data] queue_monitor thread has finished
[2026-03-11 04:38:16] 2026-03-11 08:37:50,488 | INFO     | job.realtimelogging is not enabled
[2026-03-11 04:38:16] 2026-03-11 08:37:51,493 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-11 04:38:16] 2026-03-11 08:38:09,488 | INFO     | PID=675651 has CPU usage=3.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-11 04:38:16] 2026-03-11 08:38:09,488 | INFO     | .. there are 3 such processes running
[2026-03-11 04:38:16] 2026-03-11 08:38:09,489 | INFO     | found 0 job(s) in 20 queues
[2026-03-11 04:38:16] 2026-03-11 08:38:09,489 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-11 04:38:16] 2026-03-11 08:38:09,489 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-11 04:38:16] 2026-03-11 08:38:09,849 | INFO     | [monitor] cgroup control has ended
[2026-03-11 04:38:16] 2026-03-11 08:38:11,738 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 130733526030144)>', '<ExcThread(monitor, started 130732890515200)>']
[2026-03-11 04:38:16] 2026-03-11 08:38:12,504 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-11 04:38:16] 2026-03-11 08:38:12,515 | INFO     | [monitor] control thread has ended
[2026-03-11 04:38:16] 2026-03-11 08:38:16,763 | INFO     | all workflow threads have been joined
[2026-03-11 04:38:16] 2026-03-11 08:38:16,763 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-11 04:38:16] 2026-03-11 08:38:16,763 | INFO     | traces error code: 0
[2026-03-11 04:38:16] 2026-03-11 08:38:16,763 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-11 04:38:16] 2026-03-11 08:38:16,834 [wrapper] ==== pilot stdout END ====
[2026-03-11 04:38:16] 2026-03-11 08:38:16,836 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-11 04:38:16] 2026-03-11 08:38:16,837 [wrapper] pilotpid: 675651
[2026-03-11 04:38:16] 2026-03-11 08:38:16,839 [wrapper] Pilot exit status: 0
[2026-03-11 04:38:16] 2026-03-11 08:38:16,845 [wrapper] pandaids: 7049377017
[2026-03-11 04:38:16] 2026-03-11 08:38:16,866 [wrapper] cleanup supervisor_pilot  725058 675652
[2026-03-11 04:38:16] 2026-03-11 08:38:16,868 [wrapper] Test setup, not cleaning
[2026-03-11 04:38:16] 2026-03-11 08:38:16,870 [wrapper] apfmon messages muted
[2026-03-11 04:38:16] 2026-03-11 08:38:16,872 [wrapper] ==== wrapper stdout END ====
[2026-03-11 04:38:16] 2026-03-11 08:38:16,873 [wrapper] ==== wrapper stderr END ====
[2026-03-11 04:38:16]  *** Error codes and diagnostics ***
[2026-03-11 04:38:16]     "exeErrorCode": 0,
[2026-03-11 04:38:16]     "exeErrorDiag": "",
[2026-03-11 04:38:16]     "pilotErrorCode": 0,
[2026-03-11 04:38:16]     "pilotErrorDiag": "",
[2026-03-11 04:38:16]  *** Listing of results directory ***
[2026-03-11 04:38:16] total 406520
[2026-03-11 04:38:16] -rw-r--r-- 1 whitlerd whitlerd    585013 Mar 10 22:46 pilot3.tar.gz
[2026-03-11 04:38:16] -rw-r--r-- 1 whitlerd whitlerd      5111 Mar 10 22:47 queuedata.json
[2026-03-11 04:38:16] -rwx------ 1 whitlerd whitlerd     36322 Mar 10 22:47 runpilot2-wrapper.sh
[2026-03-11 04:38:16] -rw-rw-r-- 1 whitlerd whitlerd       100 Mar 11 01:56 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-11 04:38:16] -rwxr-xr-x 1 whitlerd whitlerd      7986 Mar 11 01:56 run_atlas
[2026-03-11 04:38:16] -rw-rw-r-- 1 whitlerd whitlerd       105 Mar 11 01:56 job.xml
[2026-03-11 04:38:16] -rw-r--r-- 2 whitlerd whitlerd     15845 Mar 11 01:56 start_atlas.sh
[2026-03-11 04:38:16] drwxrwx--x 2 whitlerd whitlerd      4096 Mar 11 01:56 shared
[2026-03-11 04:38:16] -rw-r--r-- 2 whitlerd whitlerd    597518 Mar 11 01:56 input.tar.gz
[2026-03-11 04:38:16] -rw-rw-r-- 1 whitlerd whitlerd      6467 Mar 11 01:56 init_data.xml
[2026-03-11 04:38:16] -rw-r--r-- 2 whitlerd whitlerd 213867642 Mar 11 01:56 EVNT.48967083._000213.pool.root.1
[2026-03-11 04:38:16] -rw-rw-r-- 1 whitlerd whitlerd         0 Mar 11 01:56 boinc_setup_complete
[2026-03-11 04:38:16] -rw-rw-r-- 1 whitlerd whitlerd         0 Mar 11 01:56 boinc_lockfile
[2026-03-11 04:38:16] -rw-rw-r-- 1 whitlerd whitlerd      2561 Mar 11 01:56 pandaJob.out
[2026-03-11 04:38:16] -rw------- 1 whitlerd whitlerd   1006644 Mar 11 01:56 agis_schedconf.cvmfs.json
[2026-03-11 04:38:16] -rw------- 1 whitlerd whitlerd   1511578 Mar 11 01:56 agis_ddmendpoints.agis.ALL.json
[2026-03-11 04:38:16] -rw------- 1 whitlerd whitlerd       439 Mar 11 01:56 workernode_map.json
[2026-03-11 04:38:16] drwx------ 5 whitlerd whitlerd      4096 Mar 11 01:56 pilot3
[2026-03-11 04:38:16] -rw------- 1 whitlerd whitlerd 194982096 Mar 11 04:37 HITS.48967085._005309.pool.root.1
[2026-03-11 04:38:16] -rw-rw-r-- 1 whitlerd whitlerd       530 Mar 11 04:37 boinc_task_state.xml
[2026-03-11 04:38:16] -rw------- 1 whitlerd whitlerd        95 Mar 11 04:37 pilot_heartbeat.json
[2026-03-11 04:38:16] -rw------- 1 whitlerd whitlerd      1030 Mar 11 04:37 memory_monitor_summary.json
[2026-03-11 04:38:16] -rw------- 1 whitlerd whitlerd    332570 Mar 11 04:37 log.48967085._005309.job.log.tgz.1
[2026-03-11 04:38:16] -rw------- 1 whitlerd whitlerd      6360 Mar 11 04:37 heartbeat.json
[2026-03-11 04:38:16] -rw-rw-r-- 1 whitlerd whitlerd      8192 Mar 11 04:37 boinc_mmap_file
[2026-03-11 04:38:16] -rw-rw-r-- 1 whitlerd whitlerd        27 Mar 11 04:37 wrapper_checkpoint.txt
[2026-03-11 04:38:16] -rw------- 1 whitlerd whitlerd      4905 Mar 11 04:38 pilotlog.txt
[2026-03-11 04:38:16] -rw------- 1 whitlerd whitlerd   1411219 Mar 11 04:38 log.48967085._005309.job.log.1
[2026-03-11 04:38:16] -rw------- 1 whitlerd whitlerd       357 Mar 11 04:38 output.list
[2026-03-11 04:38:16] -rw-rw-r-- 1 whitlerd whitlerd       620 Mar 11 04:38 runtime_log
[2026-03-11 04:38:16] -rw------- 1 whitlerd whitlerd   1761280 Mar 11 04:38 result.tar.gz
[2026-03-11 04:38:16] -rw-rw-r-- 1 whitlerd whitlerd      9054 Mar 11 04:38 runtime_log.err
[2026-03-11 04:38:16] -rw------- 1 whitlerd whitlerd       658 Mar 11 04:38 RuLNDm3mOK9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDm35hLDm8b5upn.diag
[2026-03-11 04:38:16] -rw-rw-r-- 1 whitlerd whitlerd     21367 Mar 11 04:38 stderr.txt
[2026-03-11 04:38:16] HITS file was successfully produced:
[2026-03-11 04:38:16] -rw------- 1 whitlerd whitlerd 194982096 Mar 11 04:37 shared/HITS.pool.root.1
[2026-03-11 04:38:16]  *** Contents of shared directory: ***
[2026-03-11 04:38:16] total 401600
[2026-03-11 04:38:16] -rw-r--r-- 2 whitlerd whitlerd     15845 Mar 11 01:56 start_atlas.sh
[2026-03-11 04:38:16] -rw-r--r-- 2 whitlerd whitlerd    597518 Mar 11 01:56 input.tar.gz
[2026-03-11 04:38:16] -rw-r--r-- 2 whitlerd whitlerd 213867642 Mar 11 01:56 ATLAS.root_0
[2026-03-11 04:38:16] -rw------- 1 whitlerd whitlerd 194982096 Mar 11 04:37 HITS.pool.root.1
[2026-03-11 04:38:16] -rw------- 1 whitlerd whitlerd   1761280 Mar 11 04:38 result.tar.gz
04:38:18 (671854): run_atlas exited; CPU time 37683.633546
04:38:18 (671854): called boinc_finish(0)

</stderr_txt>
]]>

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