Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:05:01 (514529): wrapper (7.7.26015): starting
00:05:01 (514529): wrapper: running run_atlas (--nthreads 8)
[2026-03-11 00:05:01] Arguments: --nthreads 8
[2026-03-11 00:05:01] Threads: 8
[2026-03-11 00:05:01] Checking for CVMFS
[2026-03-11 00:05:04] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-11 00:05:05] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-11 00:05:05] Running cvmfs_config stat atlas.cern.ch
[2026-03-11 00:05:07] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-11 00:05:07] 2.13.3.0 9435 180612 347924 157140 1 282 17121085 32935937 28478 16776704 0 740111294 99.689 587256442 32324 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-03-11 00:05:07] CVMFS is ok
[2026-03-11 00:05:07] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-11 00:05:07] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-11 00:05:07] Further information can be found at the LHC@home message board.
[2026-03-11 00:05:07] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-11 00:05:07] Checking for apptainer binary...
[2026-03-11 00:05:07] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-11 00:05:07] Running /usr/bin/apptainer --version
[2026-03-11 00:05:08] apptainer version 1.4.5-2.el9
[2026-03-11 00:05:08] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-11 00:05:09] c-8-17.aglt2.org
[2026-03-11 00:05:09] apptainer works
[2026-03-11 00:05:09] Set ATHENA_PROC_NUMBER=8
[2026-03-11 00:05:09] Set ATHENA_CORE_NUMBER=8
[2026-03-11 00:05:09] Starting ATLAS job with PandaID=7049312969
[2026-03-11 00:05:09] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-12 00:01:59]  *** The last 200 lines of the pilot log: ***
[2026-03-12 00:01:59] 2026-03-11 14:26:45,723 | INFO     | using path: /tmp/boinchome/slots/4/PanDA_Pilot-7049312969/memory_monitor_summary.json (trf name=prmon)
[2026-03-12 00:01:59] 2026-03-11 14:26:45,739 | INFO     | extracted standard info from prmon json
[2026-03-12 00:01:59] 2026-03-11 14:26:45,739 | INFO     | extracted standard memory fields from prmon json
[2026-03-12 00:01:59] 2026-03-11 14:26:45,744 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-12 00:01:59] 2026-03-11 14:26:45,745 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-12 00:01:59] 2026-03-11 14:26:45,746 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-12 00:01:59] 2026-03-11 14:26:45,780 | INFO     | fitting pss+swap vs Time
[2026-03-12 00:01:59] 2026-03-11 14:26:45,781 | INFO     | sum of square deviations: 69008666835.49342
[2026-03-12 00:01:59] 2026-03-11 14:26:45,829 | INFO     | sum of deviations: 414752414986.90283
[2026-03-12 00:01:59] 2026-03-11 14:26:45,829 | INFO     | mean x: 1773220713.4966996
[2026-03-12 00:01:59] 2026-03-11 14:26:45,829 | INFO     | mean y: 2461860.7013201322
[2026-03-12 00:01:59] 2026-03-11 14:26:45,830 | INFO     | intersect: -10654859993.968828
[2026-03-12 00:01:59] 2026-03-11 14:26:46,023 | INFO     | chi2: 7.351269890496547
[2026-03-12 00:01:59] 2026-03-11 14:26:46,024 | INFO     | sum of square deviations: 67314729486.99822
[2026-03-12 00:01:59] 2026-03-11 14:26:46,047 | INFO     | sum of deviations: 487451498661.7247
[2026-03-12 00:01:59] 2026-03-11 14:26:46,047 | INFO     | mean x: 1773220561.001664
[2026-03-12 00:01:59] 2026-03-11 14:26:46,047 | INFO     | mean y: 2468372.2745424295
[2026-03-12 00:01:59] 2026-03-11 14:26:46,047 | INFO     | intersect: -12838094555.115599
[2026-03-12 00:01:59] 2026-03-11 14:26:46,048 | INFO     | chi2: 5.991158559347457
[2026-03-12 00:01:59] 2026-03-11 14:26:46,048 | INFO     | current chi2=5.991158559347457 (change=18.501719449960508 %)
[2026-03-12 00:01:59] 2026-03-11 14:26:46,049 | INFO     | right removable region: 600
[2026-03-12 00:01:59] 2026-03-11 14:26:46,054 | INFO     | sum of square deviations: 67313877677.46104
[2026-03-12 00:01:59] 2026-03-11 14:26:46,067 | INFO     | sum of deviations: 211894552108.87857
[2026-03-12 00:01:59] 2026-03-11 14:26:46,068 | INFO     | mean x: 1773220866.0299501
[2026-03-12 00:01:59] 2026-03-11 14:26:46,072 | INFO     | mean y: 2480110.2845257903
[2026-03-12 00:01:59] 2026-03-11 14:26:46,072 | INFO     | intersect: -5579368004.273627
[2026-03-12 00:01:59] 2026-03-11 14:26:46,073 | INFO     | chi2: 3.2053937644499313
[2026-03-12 00:01:59] 2026-03-11 14:26:46,073 | INFO     | current chi2=3.2053937644499313 (change=56.39673400382501 %)
[2026-03-12 00:01:59] 2026-03-11 14:26:46,074 | INFO     | sum of square deviations: 65647115500.82541
[2026-03-12 00:01:59] 2026-03-11 14:26:46,098 | INFO     | sum of deviations: 97059831615.8693
[2026-03-12 00:01:59] 2026-03-11 14:26:46,098 | INFO     | mean x: 1773221018.5604026
[2026-03-12 00:01:59] 2026-03-11 14:26:46,098 | INFO     | mean y: 2490603.0453020134
[2026-03-12 00:01:59] 2026-03-11 14:26:46,098 | INFO     | intersect: -2619232105.8074417
[2026-03-12 00:01:59] 2026-03-11 14:26:46,099 | INFO     | chi2: 1.8134752679136918
[2026-03-12 00:01:59] 2026-03-11 14:26:46,099 | INFO     | current chi2=1.8134752679136918 (change=43.42425919628326 %)
[2026-03-12 00:01:59] 2026-03-11 14:26:46,100 | INFO     | sum of square deviations: 64008039019.88148
[2026-03-12 00:01:59] 2026-03-11 14:26:46,127 | INFO     | sum of deviations: 42851864017.05924
[2026-03-12 00:01:59] 2026-03-11 14:26:46,127 | INFO     | mean x: 1773221171.0930626
[2026-03-12 00:01:59] 2026-03-11 14:26:46,128 | INFO     | mean y: 2495645.453468697
[2026-03-12 00:01:59] 2026-03-11 14:26:46,128 | INFO     | intersect: -1184633872.3286426
[2026-03-12 00:01:59] 2026-03-11 14:26:46,129 | INFO     | chi2: 1.542944114817856
[2026-03-12 00:01:59] 2026-03-11 14:26:46,178 | INFO     | current chi2=1.542944114817856 (change=14.917829753866329 %)
[2026-03-12 00:01:59] 2026-03-11 14:26:46,178 | INFO     | left removable region: 30
[2026-03-12 00:01:59] 2026-03-11 14:26:46,179 | INFO     | sum of square deviations: 57422874117.65612
[2026-03-12 00:01:59] 2026-03-11 14:26:46,289 | INFO     | sum of deviations: 70233488282.3929
[2026-03-12 00:01:59] 2026-03-11 14:26:46,289 | INFO     | mean x: 1773221445.6912282
[2026-03-12 00:01:59] 2026-03-11 14:26:46,290 | INFO     | mean y: 2507060.1385964914
[2026-03-12 00:01:59] 2026-03-11 14:26:46,290 | INFO     | intersect: -2166306840.9710627
[2026-03-12 00:01:59] 2026-03-11 14:26:46,291 | INFO     | chi2: 0.025025184738906945
[2026-03-12 00:01:59] 2026-03-11 14:26:46,291 | INFO     | current memory leak: 1.22 B/s (using 570 data points, chi2=0.03)
[2026-03-12 00:01:59] 2026-03-11 14:26:46,331 | INFO     | could have reported an average CPU frequency of 2600 MHz (24 samples)
[2026-03-12 00:01:59] 2026-03-11 14:26:46,331 | INFO     | ..............................
[2026-03-12 00:01:59] 2026-03-11 14:26:46,331 | INFO     | . Timing measurements:
[2026-03-12 00:01:59] 2026-03-11 14:26:46,331 | INFO     | . get job = 1 s
[2026-03-12 00:01:59] 2026-03-11 14:26:46,332 | INFO     | . initial setup = 76 s
[2026-03-12 00:01:59] 2026-03-11 14:26:46,332 | INFO     | . payload setup = 78 s
[2026-03-12 00:01:59] 2026-03-11 14:26:46,332 | INFO     | . stage-in = 1 s
[2026-03-12 00:01:59] 2026-03-11 14:26:46,332 | INFO     | . payload execution = 36996 s
[2026-03-12 00:01:59] 2026-03-11 14:26:46,332 | INFO     | . stage-out = 10 s
[2026-03-12 00:01:59] 2026-03-11 14:26:46,332 | INFO     | . log creation = 1 s
[2026-03-12 00:01:59] 2026-03-11 14:26:46,332 | INFO     | ..............................
[2026-03-12 00:01:59] 2026-03-11 14:26:47,695 | INFO     | 
[2026-03-12 00:01:59] 2026-03-11 14:26:47,695 | INFO     | job summary report
[2026-03-12 00:01:59] 2026-03-11 14:26:47,696 | INFO     | --------------------------------------------------
[2026-03-12 00:01:59] 2026-03-11 14:26:47,696 | INFO     | PanDA job id: 7049312969
[2026-03-12 00:01:59] 2026-03-11 14:26:47,696 | INFO     | task id: 48967085
[2026-03-12 00:01:59] 2026-03-11 14:26:47,696 | INFO     | errors: (none)
[2026-03-12 00:01:59] 2026-03-11 14:26:47,696 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-12 00:01:59] 2026-03-11 14:26:47,697 | INFO     | pilot state: finished 
[2026-03-12 00:01:59] 2026-03-11 14:26:47,697 | INFO     | transexitcode: 0
[2026-03-12 00:01:59] 2026-03-11 14:26:47,697 | INFO     | exeerrorcode: 0
[2026-03-12 00:01:59] 2026-03-11 14:26:47,697 | INFO     | exeerrordiag: 
[2026-03-12 00:01:59] 2026-03-11 14:26:47,697 | INFO     | exitcode: 0
[2026-03-12 00:01:59] 2026-03-11 14:26:47,697 | INFO     | exitmsg: OK
[2026-03-12 00:01:59] 2026-03-11 14:26:47,698 | INFO     | cpuconsumptiontime: 58811 s
[2026-03-12 00:01:59] 2026-03-11 14:26:47,698 | INFO     | nevents: 400
[2026-03-12 00:01:59] 2026-03-11 14:26:47,698 | INFO     | neventsw: 0
[2026-03-12 00:01:59] 2026-03-11 14:26:47,698 | INFO     | pid: 541847
[2026-03-12 00:01:59] 2026-03-11 14:26:47,698 | INFO     | pgrp: 541847
[2026-03-12 00:01:59] 2026-03-11 14:26:47,699 | INFO     | corecount: 8
[2026-03-12 00:01:59] 2026-03-11 14:26:47,699 | INFO     | event service: False
[2026-03-12 00:01:59] 2026-03-11 14:26:47,699 | INFO     | sizes: {0: 2279148, 1: 2279833, 3: 2279861, 5: 2279861, 6: 2280350, 7: 2280350, 37080: 2319071, 37081: 2319070, 37093: 2328180, 37097: 2328318}
[2026-03-12 00:01:59] 2026-03-11 14:26:47,700 | INFO     | --------------------------------------------------
[2026-03-12 00:01:59] 2026-03-11 14:26:47,701 | INFO     | 
[2026-03-12 00:01:59] 2026-03-11 14:26:47,701 | INFO     | executing command: ls -lF /tmp/boinchome/slots/4
[2026-03-12 00:01:59] 2026-03-11 14:26:47,798 | INFO     | PID=526730 has CPU usage=9.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-12 00:01:59] 2026-03-11 14:26:47,799 | INFO     | .. there are 45 such processes running
[2026-03-12 00:01:59] 2026-03-11 14:26:47,981 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-12 00:01:59] 2026-03-11 14:26:47,981 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-12 00:01:59] 2026-03-11 14:26:47,981 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-12 00:01:59] 2026-03-11 14:26:47,982 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-12 00:01:59] 2026-03-11 14:26:47,982 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-12 00:01:59] 2026-03-11 14:26:47,982 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-12 00:01:59] 2026-03-11 14:26:47,982 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-12 00:01:59] 2026-03-11 14:26:47,983 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-12 00:01:59] 2026-03-11 14:26:47,983 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-12 00:01:59] 2026-03-11 14:26:47,983 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-12 00:01:59] 2026-03-11 14:26:47,984 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-12 00:01:59] 2026-03-11 14:26:47,984 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-12 00:01:59] 2026-03-11 14:26:47,984 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-12 00:01:59] 2026-03-11 14:26:47,985 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-12 00:01:59] 2026-03-11 14:26:47,985 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-12 00:01:59] 2026-03-11 14:26:47,985 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-12 00:01:59] 2026-03-11 14:26:47,985 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-12 00:01:59] 2026-03-11 14:26:47,985 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-12 00:01:59] 2026-03-11 14:26:47,985 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-12 00:01:59] 2026-03-11 14:26:47,986 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-12 00:01:59] 2026-03-11 14:26:47,986 | INFO     | job 7049312969 has completed (purged errors)
[2026-03-12 00:01:59] 2026-03-11 14:26:47,987 | INFO     | overall cleanup function is called
[2026-03-12 00:01:59] 2026-03-11 14:26:49,029 | INFO     | --- collectZombieJob: --- 10, [541847]
[2026-03-12 00:01:59] 2026-03-11 14:26:49,029 | INFO     | zombie collector waiting for pid 541847
[2026-03-12 00:01:59] 2026-03-11 14:26:49,029 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-12 00:01:59] 2026-03-11 14:26:49,029 | INFO     | collected zombie processes
[2026-03-12 00:01:59] 2026-03-11 14:26:49,029 | INFO     | will attempt to kill all subprocesses of pid=541847
[2026-03-12 00:01:59] 2026-03-11 14:26:52,818 | INFO     | process IDs to be killed: [541847] (in reverse order)
[2026-03-12 00:01:59] 2026-03-11 14:26:53,404 | WARNING  | found no corresponding commands to process id(s)
[2026-03-12 00:01:59] 2026-03-11 14:26:53,408 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-12 00:01:59] 2026-03-11 14:26:53,469 | INFO     | did not find any defunct processes belonging to 541847
[2026-03-12 00:01:59] 2026-03-11 14:26:53,501 | INFO     | did not find any defunct processes belonging to 541847
[2026-03-12 00:01:59] 2026-03-11 14:26:53,501 | INFO     | ready for new job
[2026-03-12 00:01:59] 2026-03-11 14:26:53,501 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-12 00:01:59] 2026-03-11 14:26:53,508 | INFO     | **************************************
[2026-03-12 00:01:59] 2026-03-11 14:26:53,508 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-12 00:01:59] 2026-03-11 14:26:53,508 | INFO     | **************************************
[2026-03-12 00:01:59] 2026-03-11 14:26:53,509 | INFO     | 
[2026-03-12 00:01:59] 2026-03-11 14:26:53,518 | INFO     | architecture information:
[2026-03-12 00:01:59] 2026-03-11 14:26:53,518 | INFO     | executing command: cat /etc/os-release
[2026-03-12 00:01:59] 2026-03-11 14:26:53,629 | INFO     | cat /etc/os-release:
[2026-03-12 00:01:59] NAME="CentOS Linux"
[2026-03-12 00:01:59] VERSION="7 (Core)"
[2026-03-12 00:01:59] ID="centos"
[2026-03-12 00:01:59] ID_LIKE="rhel fedora"
[2026-03-12 00:01:59] VERSION_ID="7"
[2026-03-12 00:01:59] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-12 00:01:59] ANSI_COLOR="0;31"
[2026-03-12 00:01:59] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-12 00:01:59] HOME_URL="https://www.centos.org/"
[2026-03-12 00:01:59] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-12 00:01:59] 
[2026-03-12 00:01:59] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-12 00:01:59] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-12 00:01:59] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-12 00:01:59] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-12 00:01:59] 
[2026-03-12 00:01:59] 2026-03-11 14:26:53,630 | INFO     | **************************************
[2026-03-12 00:01:59] 2026-03-11 14:26:54,145 | INFO     | executing command: df -mP /tmp/boinchome/slots/4
[2026-03-12 00:01:59] 2026-03-11 14:26:54,255 | INFO     | sufficient remaining disk space (73621569536 B)
[2026-03-12 00:01:59] 2026-03-11 14:26:54,256 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-12 00:01:59] 2026-03-11 14:26:54,256 | INFO     | current server update state: UPDATING_FINAL
[2026-03-12 00:01:59] 2026-03-11 14:26:54,256 | INFO     | update_server=False
[2026-03-12 00:01:59] 2026-03-11 14:26:54,256 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-12 00:01:59] 2026-03-11 14:26:54,281 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-12 00:01:59] 2026-03-11 14:26:54,309 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-03-12 00:01:59] 2026-03-11 14:26:54,313 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-03-12 00:01:59] 2026-03-11 14:26:54,313 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-12 00:01:59] 2026-03-11 14:26:54,313 | INFO     | will abort loop
[2026-03-12 00:01:59] 2026-03-11 14:26:54,488 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-12 00:01:59] 2026-03-11 14:26:54,554 | INFO     | all payload control threads have been joined
[2026-03-12 00:01:59] 2026-03-11 14:26:55,195 | INFO     | all data control threads have been joined
[2026-03-12 00:01:59] 2026-03-11 14:26:55,262 | INFO     | [job] retrieve thread has finished
[2026-03-12 00:01:59] 2026-03-11 14:26:55,319 | INFO     | [job] job monitor thread has finished
[2026-03-12 00:01:59] 2026-03-11 14:26:55,384 | INFO     | [payload] validate_pre thread has finished
[2026-03-12 00:01:59] 2026-03-11 14:26:55,401 | INFO     | all job control threads have been joined
[2026-03-12 00:01:59] 2026-03-11 14:26:55,468 | INFO     | [job] validate thread has finished
[2026-03-12 00:01:59] 2026-03-11 14:26:55,563 | INFO     | [payload] control thread has finished
[2026-03-12 00:01:59] 2026-03-11 14:26:55,565 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-12 00:01:59] 2026-03-11 14:26:55,565 | INFO     | [data] copytool_in thread has finished
[2026-03-12 00:01:59] 2026-03-11 14:26:55,566 | INFO     | [job] create_data_payload thread has finished
[2026-03-12 00:01:59] 2026-03-11 14:26:56,225 | INFO     | [data] control thread has finished
[2026-03-12 00:01:59] 2026-03-11 14:26:56,327 | INFO     | [data] copytool_out thread has finished
[2026-03-12 00:01:59] 2026-03-11 14:26:56,421 | INFO     | [payload] failed_post thread has finished
[2026-03-12 00:01:59] 2026-03-11 14:26:56,431 | INFO     | [job] control thread has finished
[2026-03-12 00:01:59] 2026-03-11 14:26:56,487 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-12 00:01:59] 2026-03-11 14:26:56,490 | INFO     | [payload] execute_payloads thread has finished
[2026-03-12 00:01:59] 2026-03-11 14:26:56,520 | INFO     | [payload] validate_post thread has finished
[2026-03-12 00:01:59] 2026-03-11 14:26:57,146 | INFO     | [monitor] cgroup control has ended
[2026-03-12 00:01:59] 2026-03-11 14:26:57,507 | INFO     | [job] queue monitor thread has finished
[2026-03-12 00:01:59] 2026-03-11 14:26:58,585 | INFO     | [data] queue_monitor thread has finished
[2026-03-12 00:01:59] 2026-03-11 14:26:59,067 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139843855079232)>', '<ExcThread(monitor, started 139843497604864)>']
[2026-03-12 00:01:59] 2026-03-11 14:27:04,094 | INFO     | all workflow threads have been joined
[2026-03-12 00:01:59] 2026-03-11 14:27:04,094 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-12 00:01:59] 2026-03-11 14:27:04,094 | INFO     | traces error code: 0
[2026-03-12 00:01:59] 2026-03-11 14:27:04,095 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-12 00:01:59] 2026-03-11 14:27:36,793 | INFO     | PID=526730 has CPU usage=4.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-12 00:01:59] 2026-03-11 14:27:36,793 | INFO     | .. there are 45 such processes running
[2026-03-12 00:01:59] 2026-03-11 14:27:36,964 | INFO     | found 0 job(s) in 20 queues
[2026-03-12 00:01:59] 2026-03-11 14:27:36,964 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-12 00:01:59] 2026-03-11 14:27:36,964 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-12 00:01:59] 2026-03-11 14:27:36,964 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-12 00:01:59] 2026-03-11 14:27:36,965 | INFO     | [monitor] control thread has ended
[2026-03-12 00:01:59] 2026-03-11 14:27:37,725 [wrapper] ==== pilot stdout END ====
[2026-03-12 00:01:59] 2026-03-11 14:27:37,988 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-12 00:01:59] 2026-03-11 14:27:38,031 [wrapper] pilotpid: 526730
[2026-03-12 00:01:59] 2026-03-11 14:27:38,090 [wrapper] Pilot exit status: 0
[2026-03-12 00:01:59] 2026-03-11 14:27:38,511 [wrapper] pandaids: 7049312969
[2026-03-12 00:01:59] 2026-03-11 14:27:40,149 [wrapper] cleanup supervisor_pilot 2528547 526731
[2026-03-12 00:01:59] 2026-03-11 14:27:40,191 [wrapper] Test setup, not cleaning
[2026-03-12 00:01:59] 2026-03-11 14:27:40,244 [wrapper] apfmon messages muted
[2026-03-12 00:01:59] 2026-03-11 14:27:40,277 [wrapper] ==== wrapper stdout END ====
[2026-03-12 00:01:59] 2026-03-11 14:27:40,416 [wrapper] ==== wrapper stderr END ====
[2026-03-12 00:01:59]  *** Error codes and diagnostics ***
[2026-03-12 00:01:59]     "exeErrorCode": 0,
[2026-03-12 00:01:59]     "exeErrorDiag": "",
[2026-03-12 00:01:59]     "pilotErrorCode": 0,
[2026-03-12 00:01:59]     "pilotErrorDiag": "",
[2026-03-12 00:01:59]  *** Listing of results directory ***
[2026-03-12 00:01:59] total 412008
[2026-03-12 00:01:59] -rw-r--r--. 1 boincer umatlas    585013 Mar 10 21:23 pilot3.tar.gz
[2026-03-12 00:01:59] -rw-r--r--. 1 boincer umatlas      5111 Mar 10 21:24 queuedata.json
[2026-03-12 00:01:59] -rwx------. 1 boincer umatlas     36322 Mar 10 21:24 runpilot2-wrapper.sh
[2026-03-12 00:01:59] -rw-r--r--. 1 boincer umatlas       100 Mar 11 00:05 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-12 00:01:59] -rwxr-xr-x. 1 boincer umatlas      7986 Mar 11 00:05 run_atlas
[2026-03-12 00:01:59] -rw-r--r--. 1 boincer umatlas       105 Mar 11 00:05 job.xml
[2026-03-12 00:01:59] -rw-r--r--. 2 boincer umatlas 214286003 Mar 11 00:05 EVNT.48967083._000165.pool.root.1
[2026-03-12 00:01:59] -rw-r--r--. 2 boincer umatlas     15845 Mar 11 00:05 start_atlas.sh
[2026-03-12 00:01:59] drwxrwx--x. 2 boincer umatlas      4096 Mar 11 00:05 shared
[2026-03-12 00:01:59] -rw-r--r--. 2 boincer umatlas    597510 Mar 11 00:05 input.tar.gz
[2026-03-12 00:01:59] -rw-r--r--. 1 boincer umatlas         0 Mar 11 00:05 boinc_lockfile
[2026-03-12 00:01:59] -rw-r--r--. 1 boincer umatlas      2561 Mar 11 00:05 pandaJob.out
[2026-03-12 00:01:59] -rw-------. 1 boincer umatlas        57 Mar 11 00:05 setup.sh.local
[2026-03-12 00:01:59] -rw-------. 1 boincer umatlas       440 Mar 11 00:08 workernode_map.json
[2026-03-12 00:01:59] -rw-------. 1 boincer umatlas   1006644 Mar 11 00:08 agis_schedconf.cvmfs.json
[2026-03-12 00:01:59] drwx------. 5 boincer umatlas      4096 Mar 11 00:08 pilot3
[2026-03-12 00:01:59] -rw-------. 1 boincer umatlas 196027850 Mar 11 10:24 HITS.48967085._004114.pool.root.1
[2026-03-12 00:01:59] -rw-r--r--. 1 boincer umatlas       530 Mar 11 10:24 boinc_task_state.xml
[2026-03-12 00:01:59] -rw-------. 1 boincer umatlas      1041 Mar 11 10:26 memory_monitor_summary.json
[2026-03-12 00:01:59] -rw-------. 1 boincer umatlas   1511578 Mar 11 10:26 agis_ddmendpoints.agis.ALL.json
[2026-03-12 00:01:59] -rw-------. 1 boincer umatlas    635919 Mar 11 10:26 log.48967085._004114.job.log.tgz.1
[2026-03-12 00:01:59] -rw-------. 1 boincer umatlas      6388 Mar 11 10:26 heartbeat.json
[2026-03-12 00:01:59] -rw-------. 1 boincer umatlas        95 Mar 11 10:27 pilot_heartbeat.json
[2026-03-12 00:01:59] -rw-------. 1 boincer umatlas       822 Mar 11 10:27 pilotlog.txt
[2026-03-12 00:01:59] -rw-------. 1 boincer umatlas   3188604 Mar 11 10:27 log.48967085._004114.job.log.1
[2026-03-12 00:01:59] -rw-------. 1 boincer umatlas       357 Mar 11 10:27 output.list
[2026-03-12 00:01:59] -rw-r--r--. 1 boincer umatlas       620 Mar 11 10:27 runtime_log
[2026-03-12 00:01:59] -rw-------. 1 boincer umatlas   3840000 Mar 11 10:27 result.tar.gz
[2026-03-12 00:01:59] -rw-r--r--. 1 boincer umatlas      9332 Mar 11 10:27 runtime_log.err
[2026-03-12 00:01:59] -rw-------. 1 boincer umatlas       656 Mar 11 10:27 fhNLDmuUNK9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmCqhLDmsaT9on.diag
[2026-03-12 00:01:59] -rw-r--r--. 1 boincer umatlas      6661 Mar 12 00:01 init_data.xml
[2026-03-12 00:01:59] -rw-r--r--. 1 boincer umatlas      8192 Mar 12 00:01 boinc_mmap_file
[2026-03-12 00:01:59] -rw-r--r--. 1 boincer umatlas        27 Mar 12 00:01 wrapper_checkpoint.txt
[2026-03-12 00:01:59] -rw-r--r--. 1 boincer umatlas     21268 Mar 12 00:01 stderr.txt
[2026-03-12 00:01:59] HITS file was successfully produced:
[2026-03-12 00:01:59] -rw-------. 1 boincer umatlas 196027850 Mar 11 10:24 shared/HITS.pool.root.1
[2026-03-12 00:01:59]  *** Contents of shared directory: ***
[2026-03-12 00:01:59] total 405056
[2026-03-12 00:01:59] -rw-r--r--. 2 boincer umatlas 214286003 Mar 11 00:05 ATLAS.root_0
[2026-03-12 00:01:59] -rw-r--r--. 2 boincer umatlas     15845 Mar 11 00:05 start_atlas.sh
[2026-03-12 00:01:59] -rw-r--r--. 2 boincer umatlas    597510 Mar 11 00:05 input.tar.gz
[2026-03-12 00:01:59] -rw-------. 1 boincer umatlas 196027850 Mar 11 10:24 HITS.pool.root.1
[2026-03-12 00:01:59] -rw-------. 1 boincer umatlas   3840000 Mar 11 10:27 result.tar.gz
00:02:01 (514529): run_atlas exited; CPU time 59967.302503
00:02:01 (514529): called boinc_finish(0)

</stderr_txt>
]]>

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