Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
13:44:31 (550763): wrapper (7.7.26015): starting
13:44:31 (550763): wrapper: running run_atlas (--nthreads 3)
[2026-03-11 13:44:31] Arguments: --nthreads 3
[2026-03-11 13:44:31] Threads: 3
[2026-03-11 13:44:31] Checking for CVMFS
[2026-03-11 13:44:31] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-11 13:44:32] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-11 13:44:32] Running cvmfs_config stat atlas.cern.ch
[2026-03-11 13:44:32] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-11 13:44:32] 2.9.2.0 4638 3144 81952 157155 2 49 30181201 36864001 0 130560 0 1434753 99.985 116865 15904 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-11 13:44:32] CVMFS is ok
[2026-03-11 13:44:32] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-11 13:44:32] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-11 13:44:32] Further information can be found at the LHC@home message board.
[2026-03-11 13:44:32] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-11 13:44:32] Checking for apptainer binary...
[2026-03-11 13:44:32] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-11 13:44:32] Running /usr/bin/apptainer --version
[2026-03-11 13:44:32] apptainer version 1.4.1-1.1
[2026-03-11 13:44:32] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-11 13:44:32] thA337a
[2026-03-11 13:44:32] apptainer works
[2026-03-11 13:44:32] Set ATHENA_PROC_NUMBER=3
[2026-03-11 13:44:32] Set ATHENA_CORE_NUMBER=3
[2026-03-11 13:44:32] Starting ATLAS job with PandaID=7049161467
[2026-03-11 13:44:32] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-11 15:25:06]  *** The last 200 lines of the pilot log: ***
[2026-03-11 15:25:06] 2026-03-11 14:24:35,322 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-11 15:25:06] 2026-03-11 14:24:35,322 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-11 15:25:06] 2026-03-11 14:24:35,322 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-11 15:25:06] 2026-03-11 14:24:35,322 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-11 15:25:06] 2026-03-11 14:24:35,322 | INFO     | job 7049161467 has completed (purged errors)
[2026-03-11 15:25:06] 2026-03-11 14:24:35,322 | INFO     | overall cleanup function is called
[2026-03-11 15:25:06] 2026-03-11 14:24:36,329 | INFO     | --- collectZombieJob: --- 10, [559229]
[2026-03-11 15:25:06] 2026-03-11 14:24:36,329 | INFO     | zombie collector waiting for pid 559229
[2026-03-11 15:25:06] 2026-03-11 14:24:36,329 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-11 15:25:06] 2026-03-11 14:24:36,329 | INFO     | collected zombie processes
[2026-03-11 15:25:06] 2026-03-11 14:24:36,329 | INFO     | will attempt to kill all subprocesses of pid=559229
[2026-03-11 15:25:06] 2026-03-11 14:24:36,375 | INFO     | process IDs to be killed: [559229] (in reverse order)
[2026-03-11 15:25:06] 2026-03-11 14:24:36,402 | WARNING  | found no corresponding commands to process id(s)
[2026-03-11 15:25:06] 2026-03-11 14:24:36,402 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-11 15:25:06] 2026-03-11 14:24:36,404 | INFO     | did not find any defunct processes belonging to 559229
[2026-03-11 15:25:06] 2026-03-11 14:24:36,405 | INFO     | did not find any defunct processes belonging to 559229
[2026-03-11 15:25:06] 2026-03-11 14:24:36,405 | INFO     | ready for new job
[2026-03-11 15:25:06] 2026-03-11 14:24:36,405 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-11 15:25:06] 2026-03-11 14:24:36,406 | INFO     | **************************************
[2026-03-11 15:25:06] 2026-03-11 14:24:36,406 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-11 15:25:06] 2026-03-11 14:24:36,406 | INFO     | **************************************
[2026-03-11 15:25:06] 2026-03-11 14:24:36,406 | INFO     | 
[2026-03-11 15:25:06] 2026-03-11 14:24:36,406 | INFO     | architecture information:
[2026-03-11 15:25:06] 2026-03-11 14:24:36,406 | INFO     | executing command: cat /etc/os-release
[2026-03-11 15:25:06] 2026-03-11 14:24:36,416 | INFO     | cat /etc/os-release:
[2026-03-11 15:25:06] NAME="CentOS Linux"
[2026-03-11 15:25:06] VERSION="7 (Core)"
[2026-03-11 15:25:06] ID="centos"
[2026-03-11 15:25:06] ID_LIKE="rhel fedora"
[2026-03-11 15:25:06] VERSION_ID="7"
[2026-03-11 15:25:06] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-11 15:25:06] ANSI_COLOR="0;31"
[2026-03-11 15:25:06] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-11 15:25:06] HOME_URL="https://www.centos.org/"
[2026-03-11 15:25:06] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-11 15:25:06] 
[2026-03-11 15:25:06] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-11 15:25:06] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-11 15:25:06] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-11 15:25:06] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-11 15:25:06] 
[2026-03-11 15:25:06] 2026-03-11 14:24:36,416 | INFO     | **************************************
[2026-03-11 15:25:06] 2026-03-11 14:24:36,917 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-11 15:25:06] 2026-03-11 14:24:36,929 | INFO     | sufficient remaining disk space (374490529792 B)
[2026-03-11 15:25:06] 2026-03-11 14:24:36,930 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-11 15:25:06] 2026-03-11 14:24:36,930 | INFO     | current server update state: UPDATING_FINAL
[2026-03-11 15:25:06] 2026-03-11 14:24:36,930 | INFO     | update_server=False
[2026-03-11 15:25:06] 2026-03-11 14:24:36,930 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-11 15:25:06] 2026-03-11 14:24:36,930 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-11 15:25:06] 2026-03-11 14:24:36,930 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-11 15:25:06] 2026-03-11 14:24:36,930 | INFO     | aborting loop
[2026-03-11 15:25:06] 2026-03-11 14:24:37,183 | INFO     | all data control threads have been joined
[2026-03-11 15:25:06] 2026-03-11 14:24:37,454 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-11 15:25:06] 2026-03-11 14:24:37,652 | INFO     | all payload control threads have been joined
[2026-03-11 15:25:06] 2026-03-11 14:24:37,934 | INFO     | [job] job monitor thread has finished
[2026-03-11 15:25:06] 2026-03-11 14:24:37,935 | INFO     | [job] queue monitor thread has finished
[2026-03-11 15:25:06] 2026-03-11 14:24:37,935 | INFO     | [job] retrieve thread has finished
[2026-03-11 15:25:06] 2026-03-11 14:24:37,954 | INFO     | [job] create_data_payload thread has finished
[2026-03-11 15:25:06] 2026-03-11 14:24:37,964 | INFO     | [payload] execute_payloads thread has finished
[2026-03-11 15:25:06] 2026-03-11 14:24:38,021 | INFO     | [data] copytool_in thread has finished
[2026-03-11 15:25:06] 2026-03-11 14:24:38,189 | INFO     | [data] control thread has finished
[2026-03-11 15:25:06] 2026-03-11 14:24:38,199 | INFO     | all job control threads have been joined
[2026-03-11 15:25:06] 2026-03-11 14:24:38,602 | INFO     | [payload] validate_post thread has finished
[2026-03-11 15:25:06] 2026-03-11 14:24:38,658 | INFO     | [payload] control thread has finished
[2026-03-11 15:25:06] 2026-03-11 14:24:38,813 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-11 15:25:06] 2026-03-11 14:24:39,093 | INFO     | [payload] failed_post thread has finished
[2026-03-11 15:25:06] 2026-03-11 14:24:39,205 | INFO     | [job] control thread has finished
[2026-03-11 15:25:06] 2026-03-11 14:24:39,321 | INFO     | [job] validate thread has finished
[2026-03-11 15:25:06] 2026-03-11 14:24:39,408 | INFO     | [payload] validate_pre thread has finished
[2026-03-11 15:25:06] 2026-03-11 14:24:39,459 | INFO     | [data] copytool_out thread has finished
[2026-03-11 15:25:06] 2026-03-11 14:24:42,816 | INFO     | [data] queue_monitor thread has finished
[2026-03-11 15:25:06] 2026-03-11 14:24:47,198 | INFO     | job.realtimelogging is not enabled
[2026-03-11 15:25:06] 2026-03-11 14:24:48,204 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-11 15:25:06] 2026-03-11 14:24:50,430 | INFO     | [monitor] cgroup control has ended
[2026-03-11 15:25:06] 2026-03-11 14:24:51,119 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139937488586560)>', '<ExcThread(monitor, started 139936997037824)>']
[2026-03-11 15:25:06] 2026-03-11 14:24:56,129 | INFO     | all workflow threads have been joined
[2026-03-11 15:25:06] 2026-03-11 14:24:56,129 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-11 15:25:06] 2026-03-11 14:24:56,129 | INFO     | traces error code: 0
[2026-03-11 15:25:06] 2026-03-11 14:24:56,130 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-11 15:25:06] 2026-03-11 14:25:06,853 | INFO     | PID=554798 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-11 15:25:06] 2026-03-11 14:25:06,853 | INFO     | found 0 job(s) in 20 queues
[2026-03-11 15:25:06] 2026-03-11 14:25:06,853 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-11 15:25:06] 2026-03-11 14:25:06,853 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-11 15:25:06] 2026-03-11 14:25:06,853 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-11 15:25:06] 2026-03-11 14:25:06,853 | INFO     | [monitor] control thread has ended
[2026-03-11 15:25:06] 2026-03-11 14:25:06,901 [wrapper] ==== pilot stdout END ====
[2026-03-11 15:25:06] 2026-03-11 14:25:06,904 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-11 15:25:06] 2026-03-11 14:25:06,906 [wrapper] pilotpid: 554798
[2026-03-11 15:25:06] 2026-03-11 14:25:06,908 [wrapper] Pilot exit status: 0
[2026-03-11 15:25:06] 2026-03-11 14:25:06,916 [wrapper] pandaids: 7049161467
[2026-03-11 15:25:06] 2026-03-11 14:25:06,932 [wrapper] cleanup supervisor_pilot  566292 554799
[2026-03-11 15:25:06] 2026-03-11 14:25:06,934 [wrapper] Test setup, not cleaning
[2026-03-11 15:25:06] 2026-03-11 14:25:06,937 [wrapper] apfmon messages muted
[2026-03-11 15:25:06] 2026-03-11 14:25:06,939 [wrapper] ==== wrapper stdout END ====
[2026-03-11 15:25:06] 2026-03-11 14:25:06,941 [wrapper] ==== wrapper stderr END ====
[2026-03-11 15:25:06]  *** Error codes and diagnostics ***
[2026-03-11 15:25:06]     "exeErrorCode": 0,
[2026-03-11 15:25:06]     "exeErrorDiag": "",
[2026-03-11 15:25:06]     "pilotErrorCode": 0,
[2026-03-11 15:25:06]     "pilotErrorDiag": "",
[2026-03-11 15:25:06]  *** Listing of results directory ***
[2026-03-11 15:25:06] total 424404
[2026-03-11 15:25:06] -rw-r--r-- 1 boinc boinc    585013 Mar 10 20:17 pilot3.tar.gz
[2026-03-11 15:25:06] -rwx------ 1 boinc boinc     36322 Mar 10 20:20 runpilot2-wrapper.sh
[2026-03-11 15:25:06] -rw-r--r-- 1 boinc boinc      5111 Mar 10 20:20 queuedata.json
[2026-03-11 15:25:06] -rw-r--r-- 1 boinc boinc       100 Mar 11 13:44 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-11 15:25:06] -rwxr-xr-x 1 boinc boinc      7986 Mar 11 13:44 run_atlas
[2026-03-11 15:25:06] -rw-r--r-- 1 boinc boinc       105 Mar 11 13:44 job.xml
[2026-03-11 15:25:06] -rw-r--r-- 2 boinc boinc 216514503 Mar 11 13:44 EVNT.48967008._000172.pool.root.1
[2026-03-11 15:25:06] -rw-r--r-- 2 boinc boinc    597521 Mar 11 13:44 input.tar.gz
[2026-03-11 15:25:06] -rw-r--r-- 2 boinc boinc     15845 Mar 11 13:44 start_atlas.sh
[2026-03-11 15:25:06] drwxrwx--x 2 boinc boinc      4096 Mar 11 13:44 shared
[2026-03-11 15:25:06] -rw-r--r-- 1 boinc boinc         0 Mar 11 13:44 boinc_setup_complete
[2026-03-11 15:25:06] -rw-r--r-- 1 boinc boinc      6446 Mar 11 13:44 init_data.xml
[2026-03-11 15:25:06] -rw-r--r-- 1 boinc boinc         0 Mar 11 13:44 boinc_lockfile
[2026-03-11 15:25:06] -rw-r--r-- 1 boinc boinc      2561 Mar 11 13:44 pandaJob.out
[2026-03-11 15:25:06] -rw------- 1 boinc boinc   1007016 Mar 11 13:44 agis_schedconf.cvmfs.json
[2026-03-11 15:25:06] -rw------- 1 boinc boinc   1511578 Mar 11 13:44 agis_ddmendpoints.agis.ALL.json
[2026-03-11 15:25:06] -rw------- 1 boinc boinc       423 Mar 11 13:44 workernode_map.json
[2026-03-11 15:25:06] drwx------ 5 boinc boinc      4096 Mar 11 13:44 pilot3
[2026-03-11 15:25:06] -rw------- 1 boinc boinc        95 Mar 11 15:24 pilot_heartbeat.json
[2026-03-11 15:25:06] -rw------- 1 boinc boinc 211862105 Mar 11 15:24 HITS.48967011._004430.pool.root.1
[2026-03-11 15:25:06] -rw-r--r-- 1 boinc boinc       529 Mar 11 15:24 boinc_task_state.xml
[2026-03-11 15:25:06] -rw------- 1 boinc boinc      1014 Mar 11 15:24 memory_monitor_summary.json
[2026-03-11 15:25:06] -rw------- 1 boinc boinc    279360 Mar 11 15:24 log.48967011._004430.job.log.tgz.1
[2026-03-11 15:25:06] -rw------- 1 boinc boinc      6298 Mar 11 15:24 heartbeat.json
[2026-03-11 15:25:06] -rw-r--r-- 1 boinc boinc        27 Mar 11 15:24 wrapper_checkpoint.txt
[2026-03-11 15:25:06] -rw-r--r-- 1 boinc boinc      8192 Mar 11 15:24 boinc_mmap_file
[2026-03-11 15:25:06] -rw------- 1 boinc boinc       746 Mar 11 15:25 pilotlog.txt
[2026-03-11 15:25:06] -rw------- 1 boinc boinc    867836 Mar 11 15:25 log.48967011._004430.job.log.1
[2026-03-11 15:25:06] -rw------- 1 boinc boinc       357 Mar 11 15:25 output.list
[2026-03-11 15:25:06] -rw-r--r-- 1 boinc boinc       620 Mar 11 15:25 runtime_log
[2026-03-11 15:25:06] -rw------- 1 boinc boinc   1167360 Mar 11 15:25 result.tar.gz
[2026-03-11 15:25:06] -rw-r--r-- 1 boinc boinc      8901 Mar 11 15:25 runtime_log.err
[2026-03-11 15:25:06] -rw------- 1 boinc boinc       658 Mar 11 15:25 gmpKDm4nHK9n9Rq4apOajLDm4fhM0noT9bVooX4SDm4DeLDm3H4rmm.diag
[2026-03-11 15:25:06] -rw-r--r-- 1 boinc boinc     11292 Mar 11 15:25 stderr.txt
[2026-03-11 15:25:06] HITS file was successfully produced:
[2026-03-11 15:25:06] -rw------- 1 boinc boinc 211862105 Mar 11 15:24 shared/HITS.pool.root.1
[2026-03-11 15:25:06]  *** Contents of shared directory: ***
[2026-03-11 15:25:06] total 420084
[2026-03-11 15:25:06] -rw-r--r-- 2 boinc boinc 216514503 Mar 11 13:44 ATLAS.root_0
[2026-03-11 15:25:06] -rw-r--r-- 2 boinc boinc    597521 Mar 11 13:44 input.tar.gz
[2026-03-11 15:25:06] -rw-r--r-- 2 boinc boinc     15845 Mar 11 13:44 start_atlas.sh
[2026-03-11 15:25:06] -rw------- 1 boinc boinc 211862105 Mar 11 15:24 HITS.pool.root.1
[2026-03-11 15:25:06] -rw------- 1 boinc boinc   1167360 Mar 11 15:25 result.tar.gz
15:25:08 (550763): run_atlas exited; CPU time 17228.179628
15:25:08 (550763): called boinc_finish(0)

</stderr_txt>
]]>

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