Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
10:14:10 (17793): wrapper (7.7.26015): starting
10:14:10 (17793): wrapper: running run_atlas (--nthreads 8)
[2026-03-11 10:14:10] Arguments: --nthreads 8
[2026-03-11 10:14:10] Threads: 8
[2026-03-11 10:14:10] Checking for CVMFS
[2026-03-11 10:14:12] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-11 10:14:12] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-11 10:14:12] Running cvmfs_config stat atlas.cern.ch
[2026-03-11 10:14:14] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-11 10:14:14] 2.11.2.0 26786 123060 106908 157148 0 55 20730366 25165824 899 130560 153 43801202 99.832 32231813 1046 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-03-11 10:14:14] CVMFS is ok
[2026-03-11 10:14:14] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-11 10:14:14] Checking for apptainer binary...
[2026-03-11 10:14:14] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-11 10:14:14] Running /usr/bin/apptainer --version
[2026-03-11 10:14:14] apptainer version 1.3.2-1.el7
[2026-03-11 10:14:14] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-11 10:14:56] cg-vwn410.simple-grid.lan
[2026-03-11 10:14:56] apptainer works
[2026-03-11 10:14:56] Set ATHENA_PROC_NUMBER=8
[2026-03-11 10:14:56] Set ATHENA_CORE_NUMBER=8
[2026-03-11 10:14:56] Starting ATLAS job with PandaID=7049177497
[2026-03-11 10:14:56] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/8 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-11 15:30:32]  *** The last 200 lines of the pilot log: ***
[2026-03-11 15:30:32] 2026-03-11 14:29:33,012 | INFO     | log transfer has been attempted: DONE
[2026-03-11 15:30:32] 2026-03-11 14:29:33,012 | INFO     | job 7049177497 has finished - writing final server update
[2026-03-11 15:30:32] 2026-03-11 14:29:33,013 | INFO     | total number of processed events: 400 (read)
[2026-03-11 15:30:32] 2026-03-11 14:29:33,015 | INFO     | using path: /var/lib/boinc/slots/8/PanDA_Pilot-7049177497/memory_monitor_summary.json (trf name=prmon)
[2026-03-11 15:30:32] 2026-03-11 14:29:33,015 | INFO     | extracted standard info from prmon json
[2026-03-11 15:30:32] 2026-03-11 14:29:33,016 | INFO     | extracted standard memory fields from prmon json
[2026-03-11 15:30:32] 2026-03-11 14:29:33,016 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-11 15:30:32] 2026-03-11 14:29:33,016 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-11 15:30:32] 2026-03-11 14:29:33,016 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-11 15:30:32] 2026-03-11 14:29:33,022 | INFO     | fitting pss+swap vs Time
[2026-03-11 15:30:32] 2026-03-11 14:29:33,023 | INFO     | sum of square deviations: 8288713550.0
[2026-03-11 15:30:32] 2026-03-11 14:29:33,026 | INFO     | sum of deviations: 106317846415.00002
[2026-03-11 15:30:32] 2026-03-11 14:29:33,026 | INFO     | mean x: 1773230226.0
[2026-03-11 15:30:32] 2026-03-11 14:29:33,026 | INFO     | mean y: 2455635.9364548493
[2026-03-11 15:30:32] 2026-03-11 14:29:33,026 | INFO     | intersect: -22742451361.881535
[2026-03-11 15:30:32] 2026-03-11 14:29:33,027 | INFO     | chi2: 8.123099529651796
[2026-03-11 15:30:32] 2026-03-11 14:29:33,028 | INFO     | sum of square deviations: 7879803557.5
[2026-03-11 15:30:32] 2026-03-11 14:29:33,034 | INFO     | sum of deviations: 123959729249.0
[2026-03-11 15:30:32] 2026-03-11 14:29:33,034 | INFO     | mean x: 1773230073.5
[2026-03-11 15:30:32] 2026-03-11 14:29:33,034 | INFO     | mean y: 2462115.1904761903
[2026-03-11 15:30:32] 2026-03-11 14:29:33,034 | INFO     | intersect: -27892791643.77284
[2026-03-11 15:30:32] 2026-03-11 14:29:33,035 | INFO     | chi2: 7.420225241121141
[2026-03-11 15:30:32] 2026-03-11 14:29:33,035 | INFO     | current chi2=7.420225241121141 (change=8.652784395475507 %)
[2026-03-11 15:30:32] 2026-03-11 14:29:33,035 | INFO     | right removable region: 293
[2026-03-11 15:30:32] 2026-03-11 14:29:33,035 | INFO     | sum of square deviations: 7879803557.5
[2026-03-11 15:30:32] 2026-03-11 14:29:33,038 | INFO     | sum of deviations: 959514933.0000038
[2026-03-11 15:30:32] 2026-03-11 14:29:33,038 | INFO     | mean x: 1773230378.5
[2026-03-11 15:30:32] 2026-03-11 14:29:33,039 | INFO     | mean y: 2494909.0204081633
[2026-03-11 15:30:32] 2026-03-11 14:29:33,039 | INFO     | intersect: -213429385.9704951
[2026-03-11 15:30:32] 2026-03-11 14:29:33,039 | INFO     | chi2: 3.1667006176416774
[2026-03-11 15:30:32] 2026-03-11 14:29:33,039 | INFO     | current chi2=3.1667006176416774 (change=61.016104676764684 %)
[2026-03-11 15:30:32] 2026-03-11 14:29:33,040 | INFO     | sum of square deviations: 7484568240.0
[2026-03-11 15:30:32] 2026-03-11 14:29:33,043 | INFO     | sum of deviations: -65917792916.0
[2026-03-11 15:30:32] 2026-03-11 14:29:33,043 | INFO     | mean x: 1773230531.0
[2026-03-11 15:30:32] 2026-03-11 14:29:33,043 | INFO     | mean y: 2520635.2110726642
[2026-03-11 15:30:32] 2026-03-11 14:29:33,043 | INFO     | intersect: 15619646324.586405
[2026-03-11 15:30:32] 2026-03-11 14:29:33,044 | INFO     | chi2: 1.0569699197984854
[2026-03-11 15:30:32] 2026-03-11 14:29:33,044 | INFO     | current chi2=1.0569699197984854 (change=66.62236038638734 %)
[2026-03-11 15:30:32] 2026-03-11 14:29:33,044 | INFO     | sum of square deviations: 7102775035.0
[2026-03-11 15:30:32] 2026-03-11 14:29:33,047 | INFO     | sum of deviations: -74920381719.0
[2026-03-11 15:30:32] 2026-03-11 14:29:33,047 | INFO     | mean x: 1773230683.5
[2026-03-11 15:30:32] 2026-03-11 14:29:33,047 | INFO     | mean y: 2524211.0352112674
[2026-03-11 15:30:32] 2026-03-11 14:29:33,048 | INFO     | intersect: 18706639015.322163
[2026-03-11 15:30:32] 2026-03-11 14:29:33,048 | INFO     | chi2: 0.9865238333131028
[2026-03-11 15:30:32] 2026-03-11 14:29:33,048 | INFO     | current chi2=0.9865238333131028 (change=6.664909300239444 %)
[2026-03-11 15:30:32] 2026-03-11 14:29:33,048 | INFO     | left removable region: 30
[2026-03-11 15:30:32] 2026-03-11 14:29:33,049 | INFO     | sum of square deviations: 5640782972.0
[2026-03-11 15:30:32] 2026-03-11 14:29:33,051 | INFO     | sum of deviations: -33560920403.000004
[2026-03-11 15:30:32] 2026-03-11 14:29:33,051 | INFO     | mean x: 1773230958.0
[2026-03-11 15:30:32] 2026-03-11 14:29:33,052 | INFO     | mean y: 2522662.847908745
[2026-03-11 15:30:32] 2026-03-11 14:29:33,052 | INFO     | intersect: 10552700418.840014
[2026-03-11 15:30:32] 2026-03-11 14:29:33,052 | INFO     | chi2: 0.16496535322802208
[2026-03-11 15:30:32] 2026-03-11 14:29:33,052 | INFO     | current memory leak: -5.95 B/s (using 263 data points, chi2=0.16)
[2026-03-11 15:30:32] 2026-03-11 14:29:33,053 | INFO     | could have reported an average CPU frequency of 1999 MHz (14 samples)
[2026-03-11 15:30:32] 2026-03-11 14:29:33,053 | INFO     | ..............................
[2026-03-11 15:30:32] 2026-03-11 14:29:33,053 | INFO     | . Timing measurements:
[2026-03-11 15:30:32] 2026-03-11 14:29:33,053 | INFO     | . get job = 0 s
[2026-03-11 15:30:32] 2026-03-11 14:29:33,054 | INFO     | . initial setup = 130 s
[2026-03-11 15:30:32] 2026-03-11 14:29:33,054 | INFO     | . payload setup = 151 s
[2026-03-11 15:30:32] 2026-03-11 14:29:33,054 | INFO     | . stage-in = 0 s
[2026-03-11 15:30:32] 2026-03-11 14:29:33,058 | INFO     | . payload execution = 18343 s
[2026-03-11 15:30:32] 2026-03-11 14:29:33,058 | INFO     | . stage-out = 4 s
[2026-03-11 15:30:32] 2026-03-11 14:29:33,058 | INFO     | . log creation = 1 s
[2026-03-11 15:30:32] 2026-03-11 14:29:33,058 | INFO     | ..............................
[2026-03-11 15:30:32] 2026-03-11 14:29:33,202 | INFO     | 
[2026-03-11 15:30:32] 2026-03-11 14:29:33,202 | INFO     | job summary report
[2026-03-11 15:30:32] 2026-03-11 14:29:33,202 | INFO     | --------------------------------------------------
[2026-03-11 15:30:32] 2026-03-11 14:29:33,202 | INFO     | PanDA job id: 7049177497
[2026-03-11 15:30:32] 2026-03-11 14:29:33,203 | INFO     | task id: 48967011
[2026-03-11 15:30:32] 2026-03-11 14:29:33,203 | INFO     | errors: (none)
[2026-03-11 15:30:32] 2026-03-11 14:29:33,203 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-11 15:30:32] 2026-03-11 14:29:33,203 | INFO     | pilot state: finished 
[2026-03-11 15:30:32] 2026-03-11 14:29:33,203 | INFO     | transexitcode: 0
[2026-03-11 15:30:32] 2026-03-11 14:29:33,203 | INFO     | exeerrorcode: 0
[2026-03-11 15:30:32] 2026-03-11 14:29:33,203 | INFO     | exeerrordiag: 
[2026-03-11 15:30:32] 2026-03-11 14:29:33,203 | INFO     | exitcode: 0
[2026-03-11 15:30:32] 2026-03-11 14:29:33,203 | INFO     | exitmsg: OK
[2026-03-11 15:30:32] 2026-03-11 14:29:33,204 | INFO     | cpuconsumptiontime: 69598 s
[2026-03-11 15:30:32] 2026-03-11 14:29:33,204 | INFO     | nevents: 400
[2026-03-11 15:30:32] 2026-03-11 14:29:33,204 | INFO     | neventsw: 0
[2026-03-11 15:30:32] 2026-03-11 14:29:33,204 | INFO     | pid: 26221
[2026-03-11 15:30:32] 2026-03-11 14:29:33,204 | INFO     | pgrp: 26221
[2026-03-11 15:30:32] 2026-03-11 14:29:33,204 | INFO     | corecount: 8
[2026-03-11 15:30:32] 2026-03-11 14:29:33,204 | INFO     | event service: False
[2026-03-11 15:30:32] 2026-03-11 14:29:33,204 | INFO     | sizes: {0: 2279148, 1: 2279833, 2: 2280294, 13: 2280294, 18499: 2312750, 18500: 2312749, 18505: 2321931, 18506: 2322015, 18509: 2322209}
[2026-03-11 15:30:32] 2026-03-11 14:29:33,204 | INFO     | --------------------------------------------------
[2026-03-11 15:30:32] 2026-03-11 14:29:33,205 | INFO     | 
[2026-03-11 15:30:32] 2026-03-11 14:29:33,205 | INFO     | executing command: ls -lF /var/lib/boinc/slots/8
[2026-03-11 15:30:32] 2026-03-11 14:29:33,636 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-11 15:30:32] 2026-03-11 14:29:33,637 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-11 15:30:32] 2026-03-11 14:29:33,637 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-11 15:30:32] 2026-03-11 14:29:33,637 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-11 15:30:32] 2026-03-11 14:29:33,637 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-11 15:30:32] 2026-03-11 14:29:33,637 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-11 15:30:32] 2026-03-11 14:29:33,637 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-11 15:30:32] 2026-03-11 14:29:33,638 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-11 15:30:32] 2026-03-11 14:29:33,638 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-11 15:30:32] 2026-03-11 14:29:33,638 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-11 15:30:32] 2026-03-11 14:29:33,638 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-11 15:30:32] 2026-03-11 14:29:33,638 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-11 15:30:32] 2026-03-11 14:29:33,638 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-11 15:30:32] 2026-03-11 14:29:33,638 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-11 15:30:32] 2026-03-11 14:29:33,638 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-11 15:30:32] 2026-03-11 14:29:33,639 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-11 15:30:32] 2026-03-11 14:29:33,639 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-11 15:30:32] 2026-03-11 14:29:33,639 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-11 15:30:32] 2026-03-11 14:29:33,639 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-11 15:30:32] 2026-03-11 14:29:33,639 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-11 15:30:32] 2026-03-11 14:29:33,639 | INFO     | job 7049177497 has completed (purged errors)
[2026-03-11 15:30:32] 2026-03-11 14:29:33,639 | INFO     | overall cleanup function is called
[2026-03-11 15:30:32] 2026-03-11 14:29:34,648 | INFO     | --- collectZombieJob: --- 10, [26221]
[2026-03-11 15:30:32] 2026-03-11 14:29:34,648 | INFO     | zombie collector waiting for pid 26221
[2026-03-11 15:30:32] 2026-03-11 14:29:34,648 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-11 15:30:32] 2026-03-11 14:29:34,649 | INFO     | collected zombie processes
[2026-03-11 15:30:32] 2026-03-11 14:29:34,649 | INFO     | will attempt to kill all subprocesses of pid=26221
[2026-03-11 15:30:32] 2026-03-11 14:29:34,734 | INFO     | process IDs to be killed: [26221] (in reverse order)
[2026-03-11 15:30:32] 2026-03-11 14:29:35,644 | WARNING  | found no corresponding commands to process id(s)
[2026-03-11 15:30:32] 2026-03-11 14:29:35,644 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-11 15:30:32] 2026-03-11 14:29:35,646 | INFO     | did not find any defunct processes belonging to 26221
[2026-03-11 15:30:32] 2026-03-11 14:29:35,648 | INFO     | did not find any defunct processes belonging to 26221
[2026-03-11 15:30:32] 2026-03-11 14:29:35,648 | INFO     | ready for new job
[2026-03-11 15:30:32] 2026-03-11 14:29:35,648 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-11 15:30:32] 2026-03-11 14:29:35,650 | INFO     | **************************************
[2026-03-11 15:30:32] 2026-03-11 14:29:35,651 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-11 15:30:32] 2026-03-11 14:29:35,651 | INFO     | **************************************
[2026-03-11 15:30:32] 2026-03-11 14:29:35,651 | INFO     | 
[2026-03-11 15:30:32] 2026-03-11 14:29:35,652 | INFO     | pilot is running in a VM
[2026-03-11 15:30:32] 2026-03-11 14:29:35,652 | INFO     | architecture information:
[2026-03-11 15:30:32] 2026-03-11 14:29:35,667 | INFO     | executing command: cat /etc/os-release
[2026-03-11 15:30:32] 2026-03-11 14:29:35,918 | INFO     | cat /etc/os-release:
[2026-03-11 15:30:32] NAME="CentOS Linux"
[2026-03-11 15:30:32] VERSION="7 (Core)"
[2026-03-11 15:30:32] ID="centos"
[2026-03-11 15:30:32] ID_LIKE="rhel fedora"
[2026-03-11 15:30:32] VERSION_ID="7"
[2026-03-11 15:30:32] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-11 15:30:32] ANSI_COLOR="0;31"
[2026-03-11 15:30:32] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-11 15:30:32] HOME_URL="https://www.centos.org/"
[2026-03-11 15:30:32] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-11 15:30:32] 
[2026-03-11 15:30:32] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-11 15:30:32] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-11 15:30:32] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-11 15:30:32] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-11 15:30:32] 
[2026-03-11 15:30:32] 2026-03-11 14:29:35,919 | INFO     | **************************************
[2026-03-11 15:30:32] 2026-03-11 14:29:36,422 | INFO     | executing command: df -mP /var/lib/boinc/slots/8
[2026-03-11 15:30:32] 2026-03-11 14:29:36,677 | INFO     | sufficient remaining disk space (497220059136 B)
[2026-03-11 15:30:32] 2026-03-11 14:29:36,677 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-11 15:30:32] 2026-03-11 14:29:36,677 | INFO     | current server update state: UPDATING_FINAL
[2026-03-11 15:30:32] 2026-03-11 14:29:36,677 | INFO     | update_server=False
[2026-03-11 15:30:32] 2026-03-11 14:29:36,677 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-11 15:30:32] 2026-03-11 14:29:36,678 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-11 15:30:32] 2026-03-11 14:29:36,678 | INFO     | aborting loop
[2026-03-11 15:30:32] 2026-03-11 14:29:36,984 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-11 15:30:32] 2026-03-11 14:29:37,351 | INFO     | all payload control threads have been joined
[2026-03-11 15:30:32] 2026-03-11 14:29:37,362 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-11 15:30:32] 2026-03-11 14:29:37,418 | INFO     | all data control threads have been joined
[2026-03-11 15:30:32] 2026-03-11 14:29:37,683 | INFO     | [job] retrieve thread has finished
[2026-03-11 15:30:32] 2026-03-11 14:29:37,684 | INFO     | [job] job monitor thread has finished
[2026-03-11 15:30:32] 2026-03-11 14:29:37,859 | INFO     | all job control threads have been joined
[2026-03-11 15:30:32] 2026-03-11 14:29:38,007 | INFO     | [job] create_data_payload thread has finished
[2026-03-11 15:30:32] 2026-03-11 14:29:38,010 | INFO     | [payload] failed_post thread has finished
[2026-03-11 15:30:32] 2026-03-11 14:29:38,217 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-11 15:30:32] 2026-03-11 14:29:38,224 | INFO     | [payload] validate_post thread has finished
[2026-03-11 15:30:32] 2026-03-11 14:29:38,344 | INFO     | [payload] validate_pre thread has finished
[2026-03-11 15:30:32] 2026-03-11 14:29:38,357 | INFO     | [payload] control thread has finished
[2026-03-11 15:30:32] 2026-03-11 14:29:38,424 | INFO     | [data] control thread has finished
[2026-03-11 15:30:32] 2026-03-11 14:29:38,458 | INFO     | [payload] execute_payloads thread has finished
[2026-03-11 15:30:32] 2026-03-11 14:29:38,524 | INFO     | [job] validate thread has finished
[2026-03-11 15:30:32] 2026-03-11 14:29:38,778 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-11 15:30:32] 2026-03-11 14:29:38,844 | INFO     | [data] copytool_in thread has finished
[2026-03-11 15:30:32] 2026-03-11 14:29:38,865 | INFO     | [job] control thread has finished
[2026-03-11 15:30:32] 2026-03-11 14:29:39,223 | INFO     | [job] queue monitor thread has finished
[2026-03-11 15:30:32] 2026-03-11 14:29:39,368 | INFO     | [data] copytool_out thread has finished
[2026-03-11 15:30:32] 2026-03-11 14:29:40,993 | INFO     | [data] queue_monitor thread has finished
[2026-03-11 15:30:32] 2026-03-11 14:30:05,450 | INFO     | PID=21774 has CPU usage=4.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-03-11 15:30:32] 2026-03-11 14:30:05,450 | INFO     | .. there are 2 such processes running
[2026-03-11 15:30:32] 2026-03-11 14:30:05,450 | INFO     | found 0 job(s) in 20 queues
[2026-03-11 15:30:32] 2026-03-11 14:30:05,450 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-11 15:30:32] 2026-03-11 14:30:05,450 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-11 15:30:32] 2026-03-11 14:30:22,343 | INFO     | [monitor] cgroup control has ended
[2026-03-11 15:30:32] 2026-03-11 14:30:23,979 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140331628767040)>', '<ExcThread(monitor, started 140331169326848)>']
[2026-03-11 15:30:32] 2026-03-11 14:30:24,562 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-11 15:30:32] 2026-03-11 14:30:24,562 | INFO     | [monitor] control thread has ended
[2026-03-11 15:30:32] 2026-03-11 14:30:29,005 | INFO     | all workflow threads have been joined
[2026-03-11 15:30:32] 2026-03-11 14:30:29,005 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-11 15:30:32] 2026-03-11 14:30:29,005 | INFO     | traces error code: 0
[2026-03-11 15:30:32] 2026-03-11 14:30:29,006 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-11 15:30:32] 2026-03-11 14:30:29,220 [wrapper] ==== pilot stdout END ====
[2026-03-11 15:30:32] 2026-03-11 14:30:29,260 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-11 15:30:32] 2026-03-11 14:30:29,318 [wrapper] pilotpid: 21774
[2026-03-11 15:30:32] 2026-03-11 14:30:29,359 [wrapper] Pilot exit status: 0
[2026-03-11 15:30:32] 2026-03-11 14:30:29,379 [wrapper] pandaids: 7049177497
[2026-03-11 15:30:32] 2026-03-11 14:30:29,427 [wrapper] cleanup supervisor_pilot 32699 21775
[2026-03-11 15:30:32] 2026-03-11 14:30:29,430 [wrapper] Test setup, not cleaning
[2026-03-11 15:30:32] 2026-03-11 14:30:29,446 [wrapper] apfmon messages muted
[2026-03-11 15:30:32] 2026-03-11 14:30:29,454 [wrapper] ==== wrapper stdout END ====
[2026-03-11 15:30:32] 2026-03-11 14:30:29,457 [wrapper] ==== wrapper stderr END ====
[2026-03-11 15:30:32]  *** Error codes and diagnostics ***
[2026-03-11 15:30:32]     "exeErrorCode": 0,
[2026-03-11 15:30:32]     "exeErrorDiag": "",
[2026-03-11 15:30:32]     "pilotErrorCode": 0,
[2026-03-11 15:30:32]     "pilotErrorDiag": "",
[2026-03-11 15:30:32]  *** Listing of results directory ***
[2026-03-11 15:30:32] total 425196
[2026-03-11 15:30:32] -rw-r--r--. 1 boinc boinc    585013 Mar 10 21:40 pilot3.tar.gz
[2026-03-11 15:30:32] -rw-r--r--. 1 boinc boinc      5111 Mar 10 22:09 queuedata.json
[2026-03-11 15:30:32] -rwx------. 1 boinc boinc     36322 Mar 10 22:10 runpilot2-wrapper.sh
[2026-03-11 15:30:32] -rw-r--r--. 1 boinc boinc       100 Mar 11 10:14 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-11 15:30:32] -rwxr-xr-x. 1 boinc boinc      7986 Mar 11 10:14 run_atlas
[2026-03-11 15:30:32] -rw-r--r--. 1 boinc boinc       105 Mar 11 10:14 job.xml
[2026-03-11 15:30:32] -rw-r--r--. 2 boinc boinc 220282518 Mar 11 10:14 EVNT.48967008._000253.pool.root.1
[2026-03-11 15:30:32] -rw-r--r--. 2 boinc boinc     15845 Mar 11 10:14 start_atlas.sh
[2026-03-11 15:30:32] drwxrwx--x. 2 boinc boinc        68 Mar 11 10:14 shared
[2026-03-11 15:30:32] -rw-r--r--. 2 boinc boinc    597525 Mar 11 10:14 input.tar.gz
[2026-03-11 15:30:32] -rw-r--r--. 1 boinc boinc      6391 Mar 11 10:14 init_data.xml
[2026-03-11 15:30:32] -rw-r--r--. 1 boinc boinc         0 Mar 11 10:14 boinc_lockfile
[2026-03-11 15:30:32] -rw-r--r--. 1 boinc boinc      2561 Mar 11 10:14 pandaJob.out
[2026-03-11 15:30:32] -rw-------. 1 boinc boinc       415 Mar 11 10:20 workernode_map.json
[2026-03-11 15:30:32] -rw-------. 1 boinc boinc   1006978 Mar 11 10:20 agis_schedconf.cvmfs.json
[2026-03-11 15:30:32] drwx------. 5 boinc boinc      4096 Mar 11 10:20 pilot3
[2026-03-11 15:30:32] -rw-------. 1 boinc boinc 204979816 Mar 11 15:27 HITS.48967011._006442.pool.root.1
[2026-03-11 15:30:32] -rw-r--r--. 1 boinc boinc       531 Mar 11 15:28 boinc_task_state.xml
[2026-03-11 15:30:32] -rw-------. 1 boinc boinc        95 Mar 11 15:29 pilot_heartbeat.json
[2026-03-11 15:30:32] -rw-------. 1 boinc boinc      1013 Mar 11 15:29 memory_monitor_summary.json
[2026-03-11 15:30:32] -rw-------. 1 boinc boinc   1511578 Mar 11 15:29 agis_ddmendpoints.agis.ALL.json
[2026-03-11 15:30:32] -rw-------. 1 boinc boinc    515357 Mar 11 15:29 log.48967011._006442.job.log.tgz.1
[2026-03-11 15:30:32] -rw-------. 1 boinc boinc      6318 Mar 11 15:29 heartbeat.json
[2026-03-11 15:30:32] -rw-r--r--. 1 boinc boinc      8192 Mar 11 15:30 boinc_mmap_file
[2026-03-11 15:30:32] -rw-r--r--. 1 boinc boinc        28 Mar 11 15:30 wrapper_checkpoint.txt
[2026-03-11 15:30:32] -rw-------. 1 boinc boinc      4880 Mar 11 15:30 pilotlog.txt
[2026-03-11 15:30:32] -rw-------. 1 boinc boinc   2593591 Mar 11 15:30 log.48967011._006442.job.log.1
[2026-03-11 15:30:32] -rw-------. 1 boinc boinc       357 Mar 11 15:30 output.list
[2026-03-11 15:30:32] -rw-r--r--. 1 boinc boinc       620 Mar 11 15:30 runtime_log
[2026-03-11 15:30:32] -rw-------. 1 boinc boinc   3123200 Mar 11 15:30 result.tar.gz
[2026-03-11 15:30:32] -rw-r--r--. 1 boinc boinc      8816 Mar 11 15:30 runtime_log.err
[2026-03-11 15:30:32] -rw-------. 1 boinc boinc       656 Mar 11 15:30 i2mKDmVWJK9n9Rq4apOajLDm4fhM0noT9bVooX4SDmKPeLDmQ7ZoSm.diag
[2026-03-11 15:30:32] -rw-r--r--. 1 boinc boinc     20727 Mar 11 15:30 stderr.txt
[2026-03-11 15:30:32] HITS file was successfully produced:
[2026-03-11 15:30:32] -rw-------. 1 boinc boinc 204979816 Mar 11 15:27 shared/HITS.pool.root.1
[2026-03-11 15:30:32]  *** Contents of shared directory: ***
[2026-03-11 15:30:32] total 418948
[2026-03-11 15:30:32] -rw-r--r--. 2 boinc boinc 220282518 Mar 11 10:14 ATLAS.root_0
[2026-03-11 15:30:32] -rw-r--r--. 2 boinc boinc     15845 Mar 11 10:14 start_atlas.sh
[2026-03-11 15:30:32] -rw-r--r--. 2 boinc boinc    597525 Mar 11 10:14 input.tar.gz
[2026-03-11 15:30:32] -rw-------. 1 boinc boinc 204979816 Mar 11 15:27 HITS.pool.root.1
[2026-03-11 15:30:32] -rw-------. 1 boinc boinc   3123200 Mar 11 15:30 result.tar.gz
15:30:34 (17793): run_atlas exited; CPU time 69792.014615
15:30:34 (17793): called boinc_finish(0)

</stderr_txt>
]]>

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