Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
21:12:53 (1578187): wrapper (7.7.26015): starting
21:12:53 (1578187): wrapper: running run_atlas (--nthreads 8)
[2026-03-10 21:12:53] Arguments: --nthreads 8
[2026-03-10 21:12:53] Threads: 8
[2026-03-10 21:12:53] Checking for CVMFS
[2026-03-10 21:12:54] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-10 21:12:54] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-10 21:12:54] Running cvmfs_config stat atlas.cern.ch
[2026-03-10 21:12:56] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-10 21:12:56] 2.13.3.0 15513 180522 822628 157136 1 978 37648836 40960000 51038 16776704 0 1403382493 99.822 642759988 30980 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-03-10 21:12:56] CVMFS is ok
[2026-03-10 21:12:56] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-10 21:12:56] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-10 21:12:56] Further information can be found at the LHC@home message board.
[2026-03-10 21:12:56] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-10 21:12:56] Checking for apptainer binary...
[2026-03-10 21:12:56] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-10 21:12:56] Running /usr/bin/apptainer --version
[2026-03-10 21:12:56] apptainer version 1.4.5-2.el9
[2026-03-10 21:12:56] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-10 21:12:57] c-1-1.aglt2.org
[2026-03-10 21:12:57] apptainer works
[2026-03-10 21:12:58] Set ATHENA_PROC_NUMBER=8
[2026-03-10 21:12:58] Set ATHENA_CORE_NUMBER=8
[2026-03-10 21:12:58] Starting ATLAS job with PandaID=7036103793
[2026-03-10 21:12:58] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
22:40:10 (1578187): BOINC client no longer exists - exiting
22:40:10 (1578187): timer handler: client dead, exiting
22:49:55 (2295918): wrapper (7.7.26015): starting
22:49:55 (2295918): wrapper: running run_atlas (--nthreads 8)
[2026-03-10 22:49:55] Arguments: --nthreads 8
[2026-03-10 22:49:55] Threads: 8
[2026-03-10 22:49:55] This job has been restarted, cleaning up previous attempt
[2026-03-10 22:49:55] Checking for CVMFS
[2026-03-10 22:49:56] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-10 22:49:57] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-10 22:49:57] Running cvmfs_config stat atlas.cern.ch
[2026-03-10 22:49:58] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-10 22:49:58] 2.13.3.0 15513 180619 807668 157138 0 593 37966608 40960001 44251 16776704 0 1404331089 99.822 642762742 30969 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-03-10 22:49:58] CVMFS is ok
[2026-03-10 22:49:58] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-10 22:49:58] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-10 22:49:58] Further information can be found at the LHC@home message board.
[2026-03-10 22:49:58] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-10 22:49:58] Checking for apptainer binary...
[2026-03-10 22:49:58] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-10 22:49:58] Running /usr/bin/apptainer --version
[2026-03-10 22:49:59] apptainer version 1.4.5-2.el9
[2026-03-10 22:49:59] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-10 22:50:00] c-1-1.aglt2.org
[2026-03-10 22:50:00] apptainer works
[2026-03-10 22:50:00] Set ATHENA_PROC_NUMBER=8
[2026-03-10 22:50:00] Set ATHENA_CORE_NUMBER=8
[2026-03-10 22:50:00] Starting ATLAS job with PandaID=7036103793
[2026-03-10 22:50:00] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-11 10:11:44]  *** The last 200 lines of the pilot log: ***
[2026-03-11 10:11:45] 2026-03-11 12:59:34,035 | INFO     | extracted standard info from prmon json
[2026-03-11 10:11:45] 2026-03-11 12:59:34,049 | INFO     | extracted standard memory fields from prmon json
[2026-03-11 10:11:45] 2026-03-11 12:59:34,049 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-11 10:11:45] 2026-03-11 12:59:34,050 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-11 10:11:45] 2026-03-11 12:59:34,050 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-11 10:11:45] 2026-03-11 12:59:34,117 | INFO     | fitting pss+swap vs Time
[2026-03-11 10:11:45] 2026-03-11 12:59:34,180 | INFO     | sum of square deviations: 66310046760.843056
[2026-03-11 10:11:45] 2026-03-11 12:59:34,242 | INFO     | sum of deviations: 141779463269.12387
[2026-03-11 10:11:45] 2026-03-11 12:59:34,242 | INFO     | mean x: 1773215742.354515
[2026-03-11 10:11:45] 2026-03-11 12:59:34,243 | INFO     | mean y: 2510744.806020067
[2026-03-11 10:11:45] 2026-03-11 12:59:34,243 | INFO     | intersect: -3788854040.6557574
[2026-03-11 10:11:45] 2026-03-11 12:59:34,244 | INFO     | chi2: 4.734820565146048
[2026-03-11 10:11:45] 2026-03-11 12:59:34,244 | INFO     | sum of square deviations: 64660694446.10135
[2026-03-11 10:11:45] 2026-03-11 12:59:34,282 | INFO     | sum of deviations: 258809991782.33533
[2026-03-11 10:11:45] 2026-03-11 12:59:34,282 | INFO     | mean x: 1773215589.8583474
[2026-03-11 10:11:45] 2026-03-11 12:59:34,282 | INFO     | mean y: 2521529.7301854976
[2026-03-11 10:11:45] 2026-03-11 12:59:34,282 | INFO     | intersect: -7094926404.765642
[2026-03-11 10:11:45] 2026-03-11 12:59:34,283 | INFO     | chi2: 2.4957154603894782
[2026-03-11 10:11:45] 2026-03-11 12:59:34,283 | INFO     | current chi2=2.4957154603894782 (change=47.290178665672485 %)
[2026-03-11 10:11:45] 2026-03-11 12:59:34,310 | INFO     | sum of square deviations: 63038887627.564995
[2026-03-11 10:11:45] 2026-03-11 12:59:34,340 | INFO     | sum of deviations: 256128775613.56467
[2026-03-11 10:11:45] 2026-03-11 12:59:34,341 | INFO     | mean x: 1773215437.3605442
[2026-03-11 10:11:45] 2026-03-11 12:59:34,341 | INFO     | mean y: 2521277.6105442178
[2026-03-11 10:11:45] 2026-03-11 12:59:34,363 | INFO     | intersect: -7202102978.348444
[2026-03-11 10:11:45] 2026-03-11 12:59:34,364 | INFO     | chi2: 2.495618997238717
[2026-03-11 10:11:45] 2026-03-11 12:59:34,364 | INFO     | current chi2=2.495618997238717 (change=0.0038651501860849364 %)
[2026-03-11 10:11:45] 2026-03-11 12:59:34,364 | INFO     | right removable region: 587
[2026-03-11 10:11:45] 2026-03-11 12:59:34,365 | INFO     | sum of square deviations: 64660455324.661415
[2026-03-11 10:11:45] 2026-03-11 12:59:34,363 | INFO     | monitor loop #1473: job 0:7036103793 is in state 'finished'
[2026-03-11 10:11:45] 2026-03-11 12:59:34,399 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-03-11 10:11:45] 2026-03-11 12:59:34,400 | INFO     | sum of deviations: -2386516375.045624
[2026-03-11 10:11:45] 2026-03-11 12:59:34,400 | INFO     | mean x: 1773215894.86172
[2026-03-11 10:11:45] 2026-03-11 12:59:34,400 | INFO     | mean y: 2524047.2799325464
[2026-03-11 10:11:45] 2026-03-11 12:59:34,400 | INFO     | intersect: 67970675.33614835
[2026-03-11 10:11:45] 2026-03-11 12:59:34,400 | INFO     | chi2: 2.4167440512276537
[2026-03-11 10:11:45] 2026-03-11 12:59:34,401 | INFO     | current chi2=2.4167440512276537 (change=48.95806466209543 %)
[2026-03-11 10:11:45] 2026-03-11 12:59:34,401 | INFO     | sum of square deviations: 63038445800.91685
[2026-03-11 10:11:45] 2026-03-11 12:59:34,436 | INFO     | sum of deviations: -38065351616.071465
[2026-03-11 10:11:45] 2026-03-11 12:59:34,436 | INFO     | mean x: 1773216047.3690476
[2026-03-11 10:11:45] 2026-03-11 12:59:34,436 | INFO     | mean y: 2527397.9081632653
[2026-03-11 10:11:45] 2026-03-11 12:59:34,436 | INFO     | intersect: 1073272266.0086633
[2026-03-11 10:11:45] 2026-03-11 12:59:34,437 | INFO     | chi2: 2.2920531687821026
[2026-03-11 10:11:45] 2026-03-11 12:59:34,437 | INFO     | current chi2=2.2920531687821026 (change=5.159457509876182 %)
[2026-03-11 10:11:45] 2026-03-11 12:59:34,437 | INFO     | left removable region: 20
[2026-03-11 10:11:45] 2026-03-11 12:59:34,438 | INFO     | sum of square deviations: 56522601713.54846
[2026-03-11 10:11:45] 2026-03-11 12:59:34,475 | INFO     | sum of deviations: 61806788717.91185
[2026-03-11 10:11:45] 2026-03-11 12:59:34,475 | INFO     | mean x: 1773216016.8853614
[2026-03-11 10:11:45] 2026-03-11 12:59:34,475 | INFO     | mean y: 2539910.844797178
[2026-03-11 10:11:45] 2026-03-11 12:59:34,475 | INFO     | intersect: -1936450588.2528481
[2026-03-11 10:11:45] 2026-03-11 12:59:34,477 | INFO     | chi2: 0.004680885704706848
[2026-03-11 10:11:45] 2026-03-11 12:59:34,477 | INFO     | current memory leak: 1.09 B/s (using 567 data points, chi2=0.00)
[2026-03-11 10:11:45] 2026-03-11 12:59:34,478 | INFO     | could have reported an average CPU frequency of 2957 MHz (24 samples)
[2026-03-11 10:11:45] 2026-03-11 12:59:34,478 | INFO     | ..............................
[2026-03-11 10:11:45] 2026-03-11 12:59:34,478 | INFO     | . Timing measurements:
[2026-03-11 10:11:45] 2026-03-11 12:59:34,478 | INFO     | . get job = 0 s
[2026-03-11 10:11:45] 2026-03-11 12:59:34,478 | INFO     | . initial setup = 2 s
[2026-03-11 10:11:45] 2026-03-11 12:59:34,478 | INFO     | . payload setup = 37 s
[2026-03-11 10:11:45] 2026-03-11 12:59:34,478 | INFO     | . stage-in = 0 s
[2026-03-11 10:11:45] 2026-03-11 12:59:34,478 | INFO     | . payload execution = 36455 s
[2026-03-11 10:11:45] 2026-03-11 12:59:34,478 | INFO     | . stage-out = 7 s
[2026-03-11 10:11:45] 2026-03-11 12:59:34,478 | INFO     | . log creation = 1 s
[2026-03-11 10:11:45] 2026-03-11 12:59:34,478 | INFO     | ..............................
[2026-03-11 10:11:45] 2026-03-11 12:59:35,384 | INFO     | time since job start (36514s) is within the limit (349056.0s)
[2026-03-11 10:11:45] 2026-03-11 12:59:35,409 | INFO     | 
[2026-03-11 10:11:45] 2026-03-11 12:59:35,409 | INFO     | job summary report
[2026-03-11 10:11:45] 2026-03-11 12:59:35,409 | INFO     | --------------------------------------------------
[2026-03-11 10:11:45] 2026-03-11 12:59:35,409 | INFO     | PanDA job id: 7036103793
[2026-03-11 10:11:45] 2026-03-11 12:59:35,409 | INFO     | task id: 48838447
[2026-03-11 10:11:45] 2026-03-11 12:59:35,410 | INFO     | errors: (none)
[2026-03-11 10:11:45] 2026-03-11 12:59:35,410 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-11 10:11:45] 2026-03-11 12:59:35,410 | INFO     | pilot state: finished 
[2026-03-11 10:11:45] 2026-03-11 12:59:35,410 | INFO     | transexitcode: 0
[2026-03-11 10:11:45] 2026-03-11 12:59:35,410 | INFO     | exeerrorcode: 0
[2026-03-11 10:11:45] 2026-03-11 12:59:35,410 | INFO     | exeerrordiag: 
[2026-03-11 10:11:45] 2026-03-11 12:59:35,410 | INFO     | exitcode: 0
[2026-03-11 10:11:45] 2026-03-11 12:59:35,410 | INFO     | exitmsg: OK
[2026-03-11 10:11:45] 2026-03-11 12:59:35,410 | INFO     | cpuconsumptiontime: 50468 s
[2026-03-11 10:11:45] 2026-03-11 12:59:35,410 | INFO     | nevents: 400
[2026-03-11 10:11:45] 2026-03-11 12:59:35,410 | INFO     | neventsw: 0
[2026-03-11 10:11:45] 2026-03-11 12:59:35,410 | INFO     | pid: 2351101
[2026-03-11 10:11:45] 2026-03-11 12:59:35,410 | INFO     | pgrp: 2351101
[2026-03-11 10:11:45] 2026-03-11 12:59:35,410 | INFO     | corecount: 8
[2026-03-11 10:11:45] 2026-03-11 12:59:35,410 | INFO     | event service: False
[2026-03-11 10:11:45] 2026-03-11 12:59:35,411 | INFO     | sizes: {0: 2279155, 1: 2279840, 2: 2280301, 36499: 2319170, 36500: 2319169, 36508: 2328407, 36512: 2328545}
[2026-03-11 10:11:45] 2026-03-11 12:59:35,411 | INFO     | --------------------------------------------------
[2026-03-11 10:11:45] 2026-03-11 12:59:35,411 | INFO     | 
[2026-03-11 10:11:45] 2026-03-11 12:59:35,411 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2026-03-11 10:11:45] 2026-03-11 12:59:35,670 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-11 10:11:45] 2026-03-11 12:59:35,671 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-11 10:11:45] 2026-03-11 12:59:35,671 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-11 10:11:45] 2026-03-11 12:59:35,671 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-11 10:11:45] 2026-03-11 12:59:35,671 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-11 10:11:45] 2026-03-11 12:59:35,671 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-11 10:11:45] 2026-03-11 12:59:35,671 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-11 10:11:45] 2026-03-11 12:59:35,671 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-11 10:11:45] 2026-03-11 12:59:35,671 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-11 10:11:45] 2026-03-11 12:59:35,671 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-11 10:11:45] 2026-03-11 12:59:35,671 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-11 10:11:45] 2026-03-11 12:59:35,671 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-11 10:11:45] 2026-03-11 12:59:35,671 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-11 10:11:45] 2026-03-11 12:59:35,671 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-11 10:11:45] 2026-03-11 12:59:35,672 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-11 10:11:45] 2026-03-11 12:59:35,672 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-11 10:11:45] 2026-03-11 12:59:35,672 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-11 10:11:45] 2026-03-11 12:59:35,672 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-11 10:11:45] 2026-03-11 12:59:35,672 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-11 10:11:45] 2026-03-11 12:59:35,672 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-11 10:11:45] 2026-03-11 12:59:35,672 | INFO     | job 7036103793 has completed (purged errors)
[2026-03-11 10:11:45] 2026-03-11 12:59:35,672 | INFO     | overall cleanup function is called
[2026-03-11 10:11:45] 2026-03-11 12:59:36,731 | INFO     | --- collectZombieJob: --- 10, [2351101]
[2026-03-11 10:11:45] 2026-03-11 12:59:36,731 | INFO     | zombie collector waiting for pid 2351101
[2026-03-11 10:11:45] 2026-03-11 12:59:36,731 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-11 10:11:45] 2026-03-11 12:59:36,731 | INFO     | collected zombie processes
[2026-03-11 10:11:45] 2026-03-11 12:59:36,731 | INFO     | will attempt to kill all subprocesses of pid=2351101
[2026-03-11 10:11:45] 2026-03-11 12:59:42,525 | INFO     | process IDs to be killed: [2351101] (in reverse order)
[2026-03-11 10:11:45] 2026-03-11 12:59:43,196 | WARNING  | found no corresponding commands to process id(s)
[2026-03-11 10:11:45] 2026-03-11 12:59:43,197 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-11 10:11:45] 2026-03-11 12:59:43,300 | INFO     | did not find any defunct processes belonging to 2351101
[2026-03-11 10:11:45] 2026-03-11 12:59:43,427 | INFO     | did not find any defunct processes belonging to 2351101
[2026-03-11 10:11:45] 2026-03-11 12:59:43,427 | INFO     | ready for new job
[2026-03-11 10:11:45] 2026-03-11 12:59:43,427 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-11 10:11:45] 2026-03-11 12:59:43,434 | INFO     | **************************************
[2026-03-11 10:11:45] 2026-03-11 12:59:43,434 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-11 10:11:45] 2026-03-11 12:59:43,434 | INFO     | **************************************
[2026-03-11 10:11:45] 2026-03-11 12:59:43,434 | INFO     | 
[2026-03-11 10:11:45] 2026-03-11 12:59:43,439 | INFO     | architecture information:
[2026-03-11 10:11:45] 2026-03-11 12:59:43,439 | INFO     | executing command: cat /etc/os-release
[2026-03-11 10:11:45] 2026-03-11 12:59:43,576 | INFO     | cat /etc/os-release:
[2026-03-11 10:11:45] NAME="CentOS Linux"
[2026-03-11 10:11:45] VERSION="7 (Core)"
[2026-03-11 10:11:45] ID="centos"
[2026-03-11 10:11:45] ID_LIKE="rhel fedora"
[2026-03-11 10:11:45] VERSION_ID="7"
[2026-03-11 10:11:45] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-11 10:11:45] ANSI_COLOR="0;31"
[2026-03-11 10:11:45] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-11 10:11:45] HOME_URL="https://www.centos.org/"
[2026-03-11 10:11:45] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-11 10:11:45] 
[2026-03-11 10:11:45] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-11 10:11:45] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-11 10:11:45] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-11 10:11:45] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-11 10:11:45] 
[2026-03-11 10:11:45] 2026-03-11 12:59:43,576 | INFO     | **************************************
[2026-03-11 10:11:45] 2026-03-11 12:59:44,087 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2026-03-11 10:11:45] 2026-03-11 12:59:44,253 | INFO     | sufficient remaining disk space (101766397952 B)
[2026-03-11 10:11:45] 2026-03-11 12:59:44,253 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-11 10:11:45] 2026-03-11 12:59:44,254 | INFO     | current server update state: UPDATING_FINAL
[2026-03-11 10:11:45] 2026-03-11 12:59:44,254 | INFO     | update_server=False
[2026-03-11 10:11:45] 2026-03-11 12:59:44,254 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-11 10:11:45] 2026-03-11 12:59:44,254 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-11 10:11:45] 2026-03-11 12:59:44,546 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-11 10:11:45] 2026-03-11 12:59:44,578 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-03-11 10:11:45] 2026-03-11 12:59:44,578 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-03-11 10:11:45] 2026-03-11 12:59:44,578 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-11 10:11:45] 2026-03-11 12:59:44,578 | INFO     | will abort loop
[2026-03-11 10:11:45] 2026-03-11 12:59:44,621 | INFO     | all job control threads have been joined
[2026-03-11 10:11:45] 2026-03-11 12:59:44,938 | INFO     | all data control threads have been joined
[2026-03-11 10:11:45] 2026-03-11 12:59:45,259 | INFO     | [job] retrieve thread has finished
[2026-03-11 10:11:45] 2026-03-11 12:59:45,347 | INFO     | all payload control threads have been joined
[2026-03-11 10:11:45] 2026-03-11 12:59:45,554 | INFO     | [job] queue monitor thread has finished
[2026-03-11 10:11:45] 2026-03-11 12:59:45,584 | INFO     | [job] job monitor thread has finished
[2026-03-11 10:11:45] 2026-03-11 12:59:45,628 | INFO     | [job] control thread has finished
[2026-03-11 10:11:45] 2026-03-11 12:59:45,745 | INFO     | [payload] validate_post thread has finished
[2026-03-11 10:11:45] 2026-03-11 12:59:45,792 | INFO     | [job] validate thread has finished
[2026-03-11 10:11:45] 2026-03-11 12:59:45,943 | INFO     | [data] control thread has finished
[2026-03-11 10:11:45] 2026-03-11 12:59:46,097 | INFO     | [job] create_data_payload thread has finished
[2026-03-11 10:11:45] 2026-03-11 12:59:46,261 | INFO     | [data] copytool_out thread has finished
[2026-03-11 10:11:45] 2026-03-11 12:59:46,352 | INFO     | [payload] control thread has finished
[2026-03-11 10:11:45] 2026-03-11 12:59:46,399 | INFO     | [payload] failed_post thread has finished
[2026-03-11 10:11:45] 2026-03-11 12:59:46,437 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-11 10:11:45] 2026-03-11 12:59:46,478 | INFO     | [payload] validate_pre thread has finished
[2026-03-11 10:11:45] 2026-03-11 12:59:46,478 | INFO     | [data] copytool_in thread has finished
[2026-03-11 10:11:45] 2026-03-11 12:59:46,517 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-11 10:11:45] 2026-03-11 12:59:46,541 | INFO     | [payload] execute_payloads thread has finished
[2026-03-11 10:11:45] 2026-03-11 12:59:50,532 | INFO     | [data] queue_monitor thread has finished
[2026-03-11 10:11:45] 2026-03-11 13:00:09,881 | INFO     | PID=2334085 has CPU usage=7.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-11 10:11:45] 2026-03-11 13:00:09,881 | INFO     | .. there are 89 such processes running
[2026-03-11 10:11:45] 2026-03-11 13:00:09,881 | INFO     | found 0 job(s) in 20 queues
[2026-03-11 10:11:45] 2026-03-11 13:00:09,882 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-11 10:11:45] 2026-03-11 13:00:09,882 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-11 10:11:45] 2026-03-11 13:00:17,681 | INFO     | [monitor] cgroup control has ended
[2026-03-11 10:11:45] 2026-03-11 13:00:19,175 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140154341046080)>', '<ExcThread(monitor, started 140154001925888)>']
[2026-03-11 10:11:45] 2026-03-11 13:00:19,964 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-11 10:11:45] 2026-03-11 13:00:19,964 | INFO     | [monitor] control thread has ended
[2026-03-11 10:11:45] 2026-03-11 13:00:24,205 | INFO     | all workflow threads have been joined
[2026-03-11 10:11:45] 2026-03-11 13:00:24,205 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-11 10:11:45] 2026-03-11 13:00:24,205 | INFO     | traces error code: 0
[2026-03-11 10:11:45] 2026-03-11 13:00:24,206 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-11 10:11:45] 2026-03-11 13:00:24,574 [wrapper] ==== pilot stdout END ====
[2026-03-11 10:11:45] 2026-03-11 13:00:24,615 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-11 10:11:45] 2026-03-11 13:00:24,643 [wrapper] pilotpid: 2334085
[2026-03-11 10:11:45] 2026-03-11 13:00:24,664 [wrapper] Pilot exit status: 0
[2026-03-11 10:11:45] 2026-03-11 13:00:24,739 [wrapper] pandaids: 7036103793 7036103793
[2026-03-11 10:11:45] 2026-03-11 13:00:26,622 [wrapper] cleanup supervisor_pilot 1125959 2334086
[2026-03-11 10:11:45] 2026-03-11 13:00:26,656 [wrapper] Test setup, not cleaning
[2026-03-11 10:11:45] 2026-03-11 13:00:26,677 [wrapper] apfmon messages muted
[2026-03-11 10:11:45] 2026-03-11 13:00:26,716 [wrapper] ==== wrapper stdout END ====
[2026-03-11 10:11:45] 2026-03-11 13:00:26,764 [wrapper] ==== wrapper stderr END ====
[2026-03-11 10:11:45]  *** Error codes and diagnostics ***
[2026-03-11 10:11:45]     "exeErrorCode": 0,
[2026-03-11 10:11:45]     "exeErrorDiag": "",
[2026-03-11 10:11:45]     "pilotErrorCode": 0,
[2026-03-11 10:11:45]     "pilotErrorDiag": "",
[2026-03-11 10:11:45]  *** Listing of results directory ***
[2026-03-11 10:11:45] total 772016
[2026-03-11 10:11:45] drwx------. 5 boincer umatlas      4096 Feb  2 10:00 pilot3
[2026-03-11 10:11:45] -rw-r--r--. 1 boincer umatlas    584627 Mar  2 14:44 pilot3.tar.gz
[2026-03-11 10:11:45] -rwx------. 1 boincer umatlas     36322 Mar  2 14:49 runpilot2-wrapper.sh
[2026-03-11 10:11:45] -rw-r--r--. 1 boincer umatlas      5111 Mar  2 14:50 queuedata.json
[2026-03-11 10:11:45] -rw-r--r--. 1 boincer umatlas       100 Mar 10 21:12 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-11 10:11:45] -rwxr-xr-x. 1 boincer umatlas      7986 Mar 10 21:12 run_atlas
[2026-03-11 10:11:45] -rw-r--r--. 1 boincer umatlas       105 Mar 10 21:12 job.xml
[2026-03-11 10:11:45] -rw-r--r--. 3 boincer umatlas 281523704 Mar 10 21:12 EVNT.48220117._000147.pool.root.1
[2026-03-11 10:11:45] -rw-r--r--. 3 boincer umatlas 281523704 Mar 10 21:12 ATLAS.root_0
[2026-03-11 10:11:45] -rw-r--r--. 2 boincer umatlas    597965 Mar 10 21:12 input.tar.gz
[2026-03-11 10:11:45] -rw-r--r--. 2 boincer umatlas     15845 Mar 10 21:12 start_atlas.sh
[2026-03-11 10:11:45] drwxrwx--x. 2 boincer umatlas      4096 Mar 10 21:12 shared
[2026-03-11 10:11:45] -rw-r--r--. 1 boincer umatlas         0 Mar 10 21:12 boinc_lockfile
[2026-03-11 10:11:45] -rw-r--r--. 1 boincer umatlas      2572 Mar 10 22:50 pandaJob.out
[2026-03-11 10:11:45] -rw-------. 1 boincer umatlas        57 Mar 10 22:50 setup.sh.local
[2026-03-11 10:11:45] -rw-------. 1 boincer umatlas   1006644 Mar 10 22:50 agis_schedconf.cvmfs.json
[2026-03-11 10:11:45] -rw-------. 1 boincer umatlas       438 Mar 10 22:50 workernode_map.json
[2026-03-11 10:11:45] -rw-------. 1 boincer umatlas 215082105 Mar 11 08:56 HITS.48838447._003559.pool.root.1
[2026-03-11 10:11:45] -rw-r--r--. 1 boincer umatlas       531 Mar 11 08:57 boinc_task_state.xml
[2026-03-11 10:11:45] -rw-------. 1 boincer umatlas      1043 Mar 11 08:59 memory_monitor_summary.json
[2026-03-11 10:11:45] -rw-------. 1 boincer umatlas   1511578 Mar 11 08:59 agis_ddmendpoints.agis.ALL.json
[2026-03-11 10:11:45] -rw-------. 1 boincer umatlas    673518 Mar 11 08:59 log.48838447._003559.job.log.tgz.1
[2026-03-11 10:11:45] -rw-------. 1 boincer umatlas        96 Mar 11 08:59 pilot_heartbeat.json
[2026-03-11 10:11:45] -rw-------. 1 boincer umatlas      6376 Mar 11 08:59 heartbeat.json
[2026-03-11 10:11:45] -rw-------. 1 boincer umatlas      5007 Mar 11 09:00 pilotlog.txt
[2026-03-11 10:11:45] -rw-------. 1 boincer umatlas   3555329 Mar 11 09:00 log.48838447._003559.job.log.1
[2026-03-11 10:11:45] -rw-------. 1 boincer umatlas       357 Mar 11 09:00 output.list
[2026-03-11 10:11:45] -rw-r--r--. 1 boincer umatlas       620 Mar 11 09:00 runtime_log
[2026-03-11 10:11:45] -rw-------. 1 boincer umatlas   4249600 Mar 11 09:00 result.tar.gz
[2026-03-11 10:11:45] -rw-r--r--. 1 boincer umatlas      9412 Mar 11 09:00 runtime_log.err
[2026-03-11 10:11:45] -rw-------. 1 boincer umatlas       780 Mar 11 09:00 DjBMDmYROH9n9Rq4apOajLDm4fhM0noT9bVooX4SDmIdCLDmUfoR8n.diag
[2026-03-11 10:11:45] -rw-r--r--. 1 boincer umatlas      6842 Mar 11 10:11 init_data.xml
[2026-03-11 10:11:45] -rw-r--r--. 1 boincer umatlas      8192 Mar 11 10:11 boinc_mmap_file
[2026-03-11 10:11:45] -rw-r--r--. 1 boincer umatlas        27 Mar 11 10:11 wrapper_checkpoint.txt
[2026-03-11 10:11:45] -rw-r--r--. 1 boincer umatlas     23429 Mar 11 10:11 stderr.txt
[2026-03-11 10:11:45] HITS file was successfully produced:
[2026-03-11 10:11:45] -rw-------. 1 boincer umatlas 215082105 Mar 11 08:56 shared/HITS.pool.root.1
[2026-03-11 10:11:45]  *** Contents of shared directory: ***
[2026-03-11 10:11:45] total 489732
[2026-03-11 10:11:45] -rw-r--r--. 3 boincer umatlas 281523704 Mar 10 21:12 ATLAS.root_0
[2026-03-11 10:11:45] -rw-r--r--. 2 boincer umatlas    597965 Mar 10 21:12 input.tar.gz
[2026-03-11 10:11:45] -rw-r--r--. 2 boincer umatlas     15845 Mar 10 21:12 start_atlas.sh
[2026-03-11 10:11:45] -rw-------. 1 boincer umatlas 215082105 Mar 11 08:56 HITS.pool.root.1
[2026-03-11 10:11:45] -rw-------. 1 boincer umatlas   4249600 Mar 11 09:00 result.tar.gz
10:11:47 (2295918): run_atlas exited; CPU time 52871.515083
10:11:47 (2295918): called boinc_finish(0)

</stderr_txt>
]]>

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