Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
13:37:02 (3130105): wrapper (7.7.26015): starting
13:37:02 (3130105): wrapper: running run_atlas (--nthreads 4)
[2026-03-11 13:37:02] Arguments: --nthreads 4
[2026-03-11 13:37:02] Threads: 4
[2026-03-11 13:37:02] Checking for CVMFS
[2026-03-11 13:37:02] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-11 13:37:03] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-11 13:37:03] Running cvmfs_config stat atlas.cern.ch
[2026-03-11 13:37:03] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-11 13:37:03] 2.9.2.0 4137866 19910 104912 157155 1 49 27177519 36864001 0 130560 0 8810062 99.984 744206 9611 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-11 13:37:03] CVMFS is ok
[2026-03-11 13:37:03] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-11 13:37:03] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-11 13:37:03] Further information can be found at the LHC@home message board.
[2026-03-11 13:37:03] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-11 13:37:03] Checking for apptainer binary...
[2026-03-11 13:37:03] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-11 13:37:03] Running /usr/bin/apptainer --version
[2026-03-11 13:37:03] apptainer version 1.4.1-1.1
[2026-03-11 13:37:03] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-11 13:37:03] iaxoA393
[2026-03-11 13:37:03] apptainer works
[2026-03-11 13:37:03] Set ATHENA_PROC_NUMBER=4
[2026-03-11 13:37:03] Set ATHENA_CORE_NUMBER=4
[2026-03-11 13:37:03] Starting ATLAS job with PandaID=7036089824
[2026-03-11 13:37:03] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-11 16:01:30]  *** The last 200 lines of the pilot log: ***
[2026-03-11 16:01:30] 2026-03-11 15:00:47,042 | INFO     | --- collectZombieJob: --- 10, [3138723]
[2026-03-11 16:01:30] 2026-03-11 15:00:47,042 | INFO     | zombie collector waiting for pid 3138723
[2026-03-11 16:01:30] 2026-03-11 15:00:47,042 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-11 16:01:30] 2026-03-11 15:00:47,042 | INFO     | collected zombie processes
[2026-03-11 16:01:30] 2026-03-11 15:00:47,042 | INFO     | will attempt to kill all subprocesses of pid=3138723
[2026-03-11 16:01:30] 2026-03-11 15:00:47,084 | INFO     | process IDs to be killed: [3138723] (in reverse order)
[2026-03-11 16:01:30] 2026-03-11 15:00:47,115 | WARNING  | found no corresponding commands to process id(s)
[2026-03-11 16:01:30] 2026-03-11 15:00:47,115 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-11 16:01:30] 2026-03-11 15:00:47,117 | INFO     | did not find any defunct processes belonging to 3138723
[2026-03-11 16:01:30] 2026-03-11 15:00:47,118 | INFO     | did not find any defunct processes belonging to 3138723
[2026-03-11 16:01:30] 2026-03-11 15:00:47,118 | INFO     | ready for new job
[2026-03-11 16:01:30] 2026-03-11 15:00:47,118 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-11 16:01:30] 2026-03-11 15:00:47,119 | INFO     | **************************************
[2026-03-11 16:01:30] 2026-03-11 15:00:47,119 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-11 16:01:30] 2026-03-11 15:00:47,119 | INFO     | **************************************
[2026-03-11 16:01:30] 2026-03-11 15:00:47,119 | INFO     | 
[2026-03-11 16:01:30] 2026-03-11 15:00:47,119 | INFO     | architecture information:
[2026-03-11 16:01:30] 2026-03-11 15:00:47,120 | INFO     | executing command: cat /etc/os-release
[2026-03-11 16:01:30] 2026-03-11 15:00:47,133 | INFO     | cat /etc/os-release:
[2026-03-11 16:01:30] NAME="CentOS Linux"
[2026-03-11 16:01:30] VERSION="7 (Core)"
[2026-03-11 16:01:30] ID="centos"
[2026-03-11 16:01:30] ID_LIKE="rhel fedora"
[2026-03-11 16:01:30] VERSION_ID="7"
[2026-03-11 16:01:30] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-11 16:01:30] ANSI_COLOR="0;31"
[2026-03-11 16:01:30] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-11 16:01:30] HOME_URL="https://www.centos.org/"
[2026-03-11 16:01:30] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-11 16:01:30] 
[2026-03-11 16:01:30] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-11 16:01:30] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-11 16:01:30] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-11 16:01:30] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-11 16:01:30] 
[2026-03-11 16:01:30] 2026-03-11 15:00:47,133 | INFO     | **************************************
[2026-03-11 16:01:30] 2026-03-11 15:00:47,636 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-11 16:01:30] 2026-03-11 15:00:47,650 | INFO     | sufficient remaining disk space (332047319040 B)
[2026-03-11 16:01:30] 2026-03-11 15:00:47,650 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-11 16:01:30] 2026-03-11 15:00:47,650 | INFO     | current server update state: UPDATING_FINAL
[2026-03-11 16:01:30] 2026-03-11 15:00:47,650 | INFO     | update_server=False
[2026-03-11 16:01:30] 2026-03-11 15:00:47,650 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-11 16:01:30] 2026-03-11 15:00:47,650 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-11 16:01:30] 2026-03-11 15:00:47,650 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-11 16:01:30] 2026-03-11 15:00:47,939 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-03-11 16:01:30] 2026-03-11 15:00:47,940 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-03-11 16:01:30] 2026-03-11 15:00:47,940 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-11 16:01:30] 2026-03-11 15:00:47,940 | INFO     | will abort loop
[2026-03-11 16:01:30] 2026-03-11 15:00:48,556 | INFO     | all data control threads have been joined
[2026-03-11 16:01:30] 2026-03-11 15:00:48,629 | INFO     | all job control threads have been joined
[2026-03-11 16:01:30] 2026-03-11 15:00:48,656 | INFO     | [job] queue monitor thread has finished
[2026-03-11 16:01:30] 2026-03-11 15:00:48,656 | INFO     | [job] retrieve thread has finished
[2026-03-11 16:01:30] 2026-03-11 15:00:48,945 | INFO     | [job] job monitor thread has finished
[2026-03-11 16:01:30] 2026-03-11 15:00:48,959 | INFO     | all payload control threads have been joined
[2026-03-11 16:01:30] 2026-03-11 15:00:49,054 | INFO     | [job] validate thread has finished
[2026-03-11 16:01:30] 2026-03-11 15:00:49,121 | INFO     | [job] create_data_payload thread has finished
[2026-03-11 16:01:30] 2026-03-11 15:00:49,178 | INFO     | [payload] validate_pre thread has finished
[2026-03-11 16:01:30] 2026-03-11 15:00:49,232 | INFO     | [payload] validate_post thread has finished
[2026-03-11 16:01:30] 2026-03-11 15:00:49,443 | INFO     | [data] copytool_in thread has finished
[2026-03-11 16:01:30] 2026-03-11 15:00:49,470 | INFO     | [payload] failed_post thread has finished
[2026-03-11 16:01:30] 2026-03-11 15:00:49,509 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-11 16:01:30] 2026-03-11 15:00:49,560 | INFO     | [data] control thread has finished
[2026-03-11 16:01:30] 2026-03-11 15:00:49,635 | INFO     | [job] control thread has finished
[2026-03-11 16:01:30] 2026-03-11 15:00:49,656 | INFO     | [data] copytool_out thread has finished
[2026-03-11 16:01:30] 2026-03-11 15:00:49,671 | INFO     | [payload] execute_payloads thread has finished
[2026-03-11 16:01:30] 2026-03-11 15:00:49,964 | INFO     | [payload] control thread has finished
[2026-03-11 16:01:30] 2026-03-11 15:00:53,516 | INFO     | [data] queue_monitor thread has finished
[2026-03-11 16:01:30] 2026-03-11 15:00:58,248 | INFO     | job.realtimelogging is not enabled
[2026-03-11 16:01:30] 2026-03-11 15:00:59,254 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-11 16:01:30] 2026-03-11 15:01:17,412 | INFO     | PID=3134212 has CPU usage=2.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-11 16:01:30] 2026-03-11 15:01:17,412 | INFO     | found 0 job(s) in 20 queues
[2026-03-11 16:01:30] 2026-03-11 15:01:17,413 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-11 16:01:30] 2026-03-11 15:01:17,413 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-11 16:01:30] 2026-03-11 15:01:25,079 | INFO     | [monitor] cgroup control has ended
[2026-03-11 16:01:30] 2026-03-11 15:01:25,514 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140612019935040)>', '<ExcThread(monitor, started 140611248187136)>']
[2026-03-11 16:01:30] 2026-03-11 15:01:26,460 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-11 16:01:30] 2026-03-11 15:01:26,460 | INFO     | [monitor] control thread has ended
[2026-03-11 16:01:30] 2026-03-11 15:01:30,525 | INFO     | all workflow threads have been joined
[2026-03-11 16:01:30] 2026-03-11 15:01:30,525 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-11 16:01:30] 2026-03-11 15:01:30,525 | INFO     | traces error code: 0
[2026-03-11 16:01:30] 2026-03-11 15:01:30,525 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-11 16:01:30] 2026-03-11 15:01:30,592 [wrapper] ==== pilot stdout END ====
[2026-03-11 16:01:30] 2026-03-11 15:01:30,595 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-11 16:01:30] 2026-03-11 15:01:30,599 [wrapper] pilotpid: 3134212
[2026-03-11 16:01:30] 2026-03-11 15:01:30,603 [wrapper] Pilot exit status: 0
[2026-03-11 16:01:30] 2026-03-11 15:01:30,614 [wrapper] pandaids: 7036089824
[2026-03-11 16:01:30] 2026-03-11 15:01:30,635 [wrapper] cleanup supervisor_pilot 3144884 3134213
[2026-03-11 16:01:30] 2026-03-11 15:01:30,639 [wrapper] Test setup, not cleaning
[2026-03-11 16:01:30] 2026-03-11 15:01:30,643 [wrapper] apfmon messages muted
[2026-03-11 16:01:30] 2026-03-11 15:01:30,646 [wrapper] ==== wrapper stdout END ====
[2026-03-11 16:01:30] 2026-03-11 15:01:30,650 [wrapper] ==== wrapper stderr END ====
[2026-03-11 16:01:30]  *** Error codes and diagnostics ***
[2026-03-11 16:01:30]     "exeErrorCode": 0,
[2026-03-11 16:01:30]     "exeErrorDiag": "",
[2026-03-11 16:01:30]     "pilotErrorCode": 0,
[2026-03-11 16:01:30]     "pilotErrorDiag": "",
[2026-03-11 16:01:30]  *** Listing of results directory ***
[2026-03-11 16:01:30] total 527656
[2026-03-11 16:01:30] -rw-r--r-- 1 boinc boinc    584627 Mar  2 20:44 pilot3.tar.gz
[2026-03-11 16:01:30] -rwx------ 1 boinc boinc     36322 Mar  2 20:48 runpilot2-wrapper.sh
[2026-03-11 16:01:30] -rw-r--r-- 1 boinc boinc      5111 Mar  2 20:49 queuedata.json
[2026-03-11 16:01:30] -rw-r--r-- 1 boinc boinc       100 Mar 11 13:37 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-11 16:01:30] -rwxr-xr-x 1 boinc boinc      7986 Mar 11 13:37 run_atlas
[2026-03-11 16:01:30] -rw-r--r-- 1 boinc boinc       105 Mar 11 13:37 job.xml
[2026-03-11 16:01:30] -rw-r--r-- 2 boinc boinc 274351803 Mar 11 13:37 EVNT.48458049._000001.pool.root.1
[2026-03-11 16:01:30] drwxrwx--x 2 boinc boinc      4096 Mar 11 13:37 shared
[2026-03-11 16:01:30] -rw-r--r-- 2 boinc boinc    597950 Mar 11 13:37 input.tar.gz
[2026-03-11 16:01:30] -rw-r--r-- 2 boinc boinc     15845 Mar 11 13:37 start_atlas.sh
[2026-03-11 16:01:30] -rw-r--r-- 1 boinc boinc         0 Mar 11 13:37 boinc_setup_complete
[2026-03-11 16:01:30] -rw-r--r-- 1 boinc boinc      6371 Mar 11 13:37 init_data.xml
[2026-03-11 16:01:30] -rw-r--r-- 1 boinc boinc         0 Mar 11 13:37 boinc_lockfile
[2026-03-11 16:01:30] -rw-r--r-- 1 boinc boinc      2602 Mar 11 13:37 pandaJob.out
[2026-03-11 16:01:30] -rw------- 1 boinc boinc   1007016 Mar 11 13:37 agis_schedconf.cvmfs.json
[2026-03-11 16:01:30] -rw------- 1 boinc boinc   1511578 Mar 11 13:37 agis_ddmendpoints.agis.ALL.json
[2026-03-11 16:01:30] -rw------- 1 boinc boinc       423 Mar 11 13:37 workernode_map.json
[2026-03-11 16:01:30] drwx------ 5 boinc boinc      4096 Mar 11 13:37 pilot3
[2026-03-11 16:01:30] -rw------- 1 boinc boinc 258906099 Mar 11 16:00 HITS.48850028._000024.pool.root.1
[2026-03-11 16:01:30] -rw-r--r-- 1 boinc boinc       530 Mar 11 16:00 boinc_task_state.xml
[2026-03-11 16:01:30] -rw------- 1 boinc boinc      1021 Mar 11 16:00 memory_monitor_summary.json
[2026-03-11 16:01:30] -rw------- 1 boinc boinc    337131 Mar 11 16:00 log.48850028._000024.job.log.tgz.1
[2026-03-11 16:01:30] -rw------- 1 boinc boinc      6309 Mar 11 16:00 heartbeat.json
[2026-03-11 16:01:30] -rw------- 1 boinc boinc        95 Mar 11 16:01 pilot_heartbeat.json
[2026-03-11 16:01:30] -rw-r--r-- 1 boinc boinc      8192 Mar 11 16:01 boinc_mmap_file
[2026-03-11 16:01:30] -rw-r--r-- 1 boinc boinc        27 Mar 11 16:01 wrapper_checkpoint.txt
[2026-03-11 16:01:30] -rw------- 1 boinc boinc      5006 Mar 11 16:01 pilotlog.txt
[2026-03-11 16:01:30] -rw------- 1 boinc boinc   1228668 Mar 11 16:01 log.48850028._000024.job.log.1
[2026-03-11 16:01:30] -rw------- 1 boinc boinc       357 Mar 11 16:01 output.list
[2026-03-11 16:01:30] -rw-r--r-- 1 boinc boinc       620 Mar 11 16:01 runtime_log
[2026-03-11 16:01:30] -rw------- 1 boinc boinc   1587200 Mar 11 16:01 result.tar.gz
[2026-03-11 16:01:30] -rw-r--r-- 1 boinc boinc      8906 Mar 11 16:01 runtime_log.err
[2026-03-11 16:01:30] -rw------- 1 boinc boinc       659 Mar 11 16:01 XwHMDmcQOH9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmJfELDmG0XHQo.diag
[2026-03-11 16:01:30] -rw-r--r-- 1 boinc boinc     10938 Mar 11 16:01 stderr.txt
[2026-03-11 16:01:30] HITS file was successfully produced:
[2026-03-11 16:01:30] -rw------- 1 boinc boinc 258906099 Mar 11 16:00 shared/HITS.pool.root.1
[2026-03-11 16:01:30]  *** Contents of shared directory: ***
[2026-03-11 16:01:30] total 522924
[2026-03-11 16:01:30] -rw-r--r-- 2 boinc boinc 274351803 Mar 11 13:37 ATLAS.root_0
[2026-03-11 16:01:30] -rw-r--r-- 2 boinc boinc    597950 Mar 11 13:37 input.tar.gz
[2026-03-11 16:01:30] -rw-r--r-- 2 boinc boinc     15845 Mar 11 13:37 start_atlas.sh
[2026-03-11 16:01:30] -rw------- 1 boinc boinc 258906099 Mar 11 16:00 HITS.pool.root.1
[2026-03-11 16:01:30] -rw------- 1 boinc boinc   1587200 Mar 11 16:01 result.tar.gz
16:01:32 (3130105): run_atlas exited; CPU time 33253.595731
16:01:32 (3130105): called boinc_finish(0)

</stderr_txt>
]]>

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