Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
21:59:37 (1542326): wrapper (7.7.26015): starting
21:59:37 (1542326): wrapper: running run_atlas (--nthreads 4)
[2026-03-11 21:59:37] Arguments: --nthreads 4
[2026-03-11 21:59:37] Threads: 4
[2026-03-11 21:59:37] Checking for CVMFS
[2026-03-11 21:59:37] No cvmfs_config command found, will try listing directly
[2026-03-11 21:59:37] CVMFS is ok
[2026-03-11 21:59:37] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-11 21:59:37] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-11 21:59:37] Further information can be found at the LHC@home message board.
[2026-03-11 21:59:37] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-11 21:59:37] Checking for apptainer binary...
[2026-03-11 21:59:37] which: no apptainer in ((null))
[2026-03-11 21:59:37] apptainer is not installed, using version from CVMFS
[2026-03-11 21:59:37] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-11 21:59:37] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot124/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut22.grid.cesnet.cz
[2026-03-11 21:59:37] apptainer works
[2026-03-11 21:59:37] Set ATHENA_PROC_NUMBER=4
[2026-03-11 21:59:37] Set ATHENA_CORE_NUMBER=4
[2026-03-11 21:59:37] Starting ATLAS job with PandaID=7035989428
[2026-03-11 21:59:37] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot124/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-12 01:53:03]  *** The last 200 lines of the pilot log: ***
[2026-03-12 01:53:03] 2026-03-12 00:41:40,223 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-12 01:53:03] 2026-03-12 00:41:40,223 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-12 01:53:03] 2026-03-12 00:41:40,223 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-12 01:53:03] 2026-03-12 00:41:40,225 | INFO     | fitting pss+swap vs Time
[2026-03-12 01:53:03] 2026-03-12 00:41:40,226 | INFO     | sum of square deviations: 3212467674.5
[2026-03-12 01:53:03] 2026-03-12 00:41:40,226 | INFO     | sum of deviations: 27853392512.0
[2026-03-12 01:53:03] 2026-03-12 00:41:40,226 | INFO     | mean x: 1773269429.5
[2026-03-12 01:53:03] 2026-03-12 00:41:40,226 | INFO     | mean y: 2335120.366972477
[2026-03-12 01:53:03] 2026-03-12 00:41:40,226 | INFO     | intersect: -15372627199.55156
[2026-03-12 01:53:03] 2026-03-12 00:41:40,227 | INFO     | chi2: 1.0919496267785196
[2026-03-12 01:53:03] 2026-03-12 00:41:40,227 | INFO     | sum of square deviations: 2996454322.0
[2026-03-12 01:53:03] 2026-03-12 00:41:40,228 | INFO     | sum of deviations: 27080787862.000004
[2026-03-12 01:53:03] 2026-03-12 00:41:40,228 | INFO     | mean x: 1773269277.0
[2026-03-12 01:53:03] 2026-03-12 00:41:40,228 | INFO     | mean y: 2334574.854460094
[2026-03-12 01:53:03] 2026-03-12 00:41:40,228 | INFO     | intersect: -16023782946.799229
[2026-03-12 01:53:03] 2026-03-12 00:41:40,228 | INFO     | chi2: 1.092284718131263
[2026-03-12 01:53:03] 2026-03-12 00:41:40,228 | INFO     | current chi2=1.092284718131263 (change=-0.030687436904203527 %)
[2026-03-12 01:53:03] 2026-03-12 00:41:40,228 | INFO     | right removable region: 212
[2026-03-12 01:53:03] 2026-03-12 00:41:40,228 | INFO     | sum of square deviations: 2996454322.0
[2026-03-12 01:53:03] 2026-03-12 00:41:40,229 | INFO     | sum of deviations: 5783012280.000001
[2026-03-12 01:53:03] 2026-03-12 00:41:40,229 | INFO     | mean x: 1773269582.0
[2026-03-12 01:53:03] 2026-03-12 00:41:40,229 | INFO     | mean y: 2350486.6807511738
[2026-03-12 01:53:03] 2026-03-12 00:41:40,229 | INFO     | intersect: -3419974256.6551723
[2026-03-12 01:53:03] 2026-03-12 00:41:40,229 | INFO     | chi2: 0.0005388563026815963
[2026-03-12 01:53:03] 2026-03-12 00:41:40,229 | INFO     | current chi2=0.0005388563026815963 (change=99.95065190834202 %)
[2026-03-12 01:53:03] 2026-03-12 00:41:40,229 | INFO     | sum of square deviations: 2790348132.0
[2026-03-12 01:53:03] 2026-03-12 00:41:40,230 | INFO     | sum of deviations: 5035494581.5
[2026-03-12 01:53:03] 2026-03-12 00:41:40,230 | INFO     | mean x: 1773269734.5
[2026-03-12 01:53:03] 2026-03-12 00:41:40,230 | INFO     | mean y: 2351039.1875
[2026-03-12 01:53:03] 2026-03-12 00:41:40,230 | INFO     | intersect: -3197712077.385903
[2026-03-12 01:53:03] 2026-03-12 00:41:40,230 | INFO     | chi2: 0.00041699566664557997
[2026-03-12 01:53:03] 2026-03-12 00:41:40,230 | INFO     | current chi2=0.00041699566664557997 (change=22.614681396428292 %)
[2026-03-12 01:53:03] 2026-03-12 00:41:40,230 | INFO     | left removable region: 20
[2026-03-12 01:53:03] 2026-03-12 00:41:40,230 | INFO     | sum of square deviations: 2194675568.0
[2026-03-12 01:53:03] 2026-03-12 00:41:40,231 | INFO     | sum of deviations: 3831014750.5
[2026-03-12 01:53:03] 2026-03-12 00:41:40,231 | INFO     | mean x: 1773269856.5
[2026-03-12 01:53:03] 2026-03-12 00:41:40,231 | INFO     | mean y: 2351606.0677083335
[2026-03-12 01:53:03] 2026-03-12 00:41:40,231 | INFO     | intersect: -3093059431.409389
[2026-03-12 01:53:03] 2026-03-12 00:41:40,231 | INFO     | chi2: 0.000274276506294916
[2026-03-12 01:53:03] 2026-03-12 00:41:40,231 | INFO     | current memory leak: 1.75 B/s (using 192 data points, chi2=0.00)
[2026-03-12 01:53:03] 2026-03-12 00:41:40,231 | INFO     | could have reported an average CPU frequency of 3563 MHz (11 samples)
[2026-03-12 01:53:03] 2026-03-12 00:41:40,232 | INFO     | ..............................
[2026-03-12 01:53:03] 2026-03-12 00:41:40,232 | INFO     | . Timing measurements:
[2026-03-12 01:53:03] 2026-03-12 00:41:40,232 | INFO     | . get job = 0 s
[2026-03-12 01:53:03] 2026-03-12 00:41:40,232 | INFO     | . initial setup = 5 s
[2026-03-12 01:53:03] 2026-03-12 00:41:40,232 | INFO     | . payload setup = 5 s
[2026-03-12 01:53:03] 2026-03-12 00:41:40,232 | INFO     | . stage-in = 0 s
[2026-03-12 01:53:03] 2026-03-12 00:41:40,232 | INFO     | . payload execution = 13287 s
[2026-03-12 01:53:03] 2026-03-12 00:41:40,232 | INFO     | . stage-out = 1 s
[2026-03-12 01:53:03] 2026-03-12 00:41:40,232 | INFO     | . log creation = 0 s
[2026-03-12 01:53:03] 2026-03-12 00:41:40,232 | INFO     | ..............................
[2026-03-12 01:53:03] 2026-03-12 00:41:40,278 | INFO     | 
[2026-03-12 01:53:03] 2026-03-12 00:41:40,279 | INFO     | job summary report
[2026-03-12 01:53:03] 2026-03-12 00:41:40,279 | INFO     | --------------------------------------------------
[2026-03-12 01:53:03] 2026-03-12 00:41:40,279 | INFO     | PanDA job id: 7035989428
[2026-03-12 01:53:03] 2026-03-12 00:41:40,279 | INFO     | task id: 48847806
[2026-03-12 01:53:03] 2026-03-12 00:41:40,279 | INFO     | errors: (none)
[2026-03-12 01:53:03] 2026-03-12 00:41:40,279 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-12 01:53:03] 2026-03-12 00:41:40,279 | INFO     | pilot state: finished 
[2026-03-12 01:53:03] 2026-03-12 00:41:40,279 | INFO     | transexitcode: 0
[2026-03-12 01:53:03] 2026-03-12 00:41:40,279 | INFO     | exeerrorcode: 0
[2026-03-12 01:53:03] 2026-03-12 00:41:40,279 | INFO     | exeerrordiag: 
[2026-03-12 01:53:03] 2026-03-12 00:41:40,279 | INFO     | exitcode: 0
[2026-03-12 01:53:03] 2026-03-12 00:41:40,279 | INFO     | exitmsg: OK
[2026-03-12 01:53:03] 2026-03-12 00:41:40,279 | INFO     | cpuconsumptiontime: 51693 s
[2026-03-12 01:53:03] 2026-03-12 00:41:40,279 | INFO     | nevents: 400
[2026-03-12 01:53:03] 2026-03-12 00:41:40,279 | INFO     | neventsw: 0
[2026-03-12 01:53:03] 2026-03-12 00:41:40,279 | INFO     | pid: 1554295
[2026-03-12 01:53:03] 2026-03-12 00:41:40,279 | INFO     | pgrp: 1554295
[2026-03-12 01:53:03] 2026-03-12 00:41:40,279 | INFO     | corecount: 4
[2026-03-12 01:53:03] 2026-03-12 00:41:40,279 | INFO     | event service: False
[2026-03-12 01:53:03] 2026-03-12 00:41:40,279 | INFO     | sizes: {0: 2280323, 11: 2280323, 13295: 2310477, 13297: 2319499, 13298: 2319749}
[2026-03-12 01:53:03] 2026-03-12 00:41:40,279 | INFO     | --------------------------------------------------
[2026-03-12 01:53:03] 2026-03-12 00:41:40,279 | INFO     | 
[2026-03-12 01:53:03] 2026-03-12 00:41:40,279 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot124/slots/0
[2026-03-12 01:53:03] 2026-03-12 00:41:40,299 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-12 01:53:03] 2026-03-12 00:41:40,299 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-12 01:53:03] 2026-03-12 00:41:40,299 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-12 01:53:03] 2026-03-12 00:41:40,299 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-12 01:53:03] 2026-03-12 00:41:40,300 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-12 01:53:03] 2026-03-12 00:41:40,300 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-12 01:53:03] 2026-03-12 00:41:40,300 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-12 01:53:03] 2026-03-12 00:41:40,300 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-12 01:53:03] 2026-03-12 00:41:40,300 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-12 01:53:03] 2026-03-12 00:41:40,300 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-12 01:53:03] 2026-03-12 00:41:40,300 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-12 01:53:03] 2026-03-12 00:41:40,300 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-12 01:53:03] 2026-03-12 00:41:40,300 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-12 01:53:03] 2026-03-12 00:41:40,300 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-12 01:53:03] 2026-03-12 00:41:40,300 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-12 01:53:03] 2026-03-12 00:41:40,300 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-12 01:53:03] 2026-03-12 00:41:40,300 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-12 01:53:03] 2026-03-12 00:41:40,300 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-12 01:53:03] 2026-03-12 00:41:40,300 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-12 01:53:03] 2026-03-12 00:41:40,300 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-12 01:53:03] 2026-03-12 00:41:40,300 | INFO     | job 7035989428 has completed (purged errors)
[2026-03-12 01:53:03] 2026-03-12 00:41:40,300 | INFO     | overall cleanup function is called
[2026-03-12 01:53:03] 2026-03-12 00:41:41,307 | INFO     | --- collectZombieJob: --- 10, [1554295]
[2026-03-12 01:53:03] 2026-03-12 00:41:41,307 | INFO     | zombie collector waiting for pid 1554295
[2026-03-12 01:53:03] 2026-03-12 00:41:41,307 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-12 01:53:03] 2026-03-12 00:41:41,307 | INFO     | collected zombie processes
[2026-03-12 01:53:03] 2026-03-12 00:41:41,307 | INFO     | will attempt to kill all subprocesses of pid=1554295
[2026-03-12 01:53:03] 2026-03-12 00:41:41,748 | INFO     | process IDs to be killed: [1554295] (in reverse order)
[2026-03-12 01:53:03] 2026-03-12 00:41:41,950 | WARNING  | found no corresponding commands to process id(s)
[2026-03-12 01:53:03] 2026-03-12 00:41:41,950 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-12 01:53:03] 2026-03-12 00:41:41,978 | INFO     | did not find any defunct processes belonging to 1554295
[2026-03-12 01:53:03] 2026-03-12 00:41:42,004 | INFO     | did not find any defunct processes belonging to 1554295
[2026-03-12 01:53:03] 2026-03-12 00:41:42,005 | INFO     | ready for new job
[2026-03-12 01:53:03] 2026-03-12 00:41:42,005 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-12 01:53:03] 2026-03-12 00:41:42,006 | INFO     | **************************************
[2026-03-12 01:53:03] 2026-03-12 00:41:42,006 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-12 01:53:03] 2026-03-12 00:41:42,006 | INFO     | **************************************
[2026-03-12 01:53:03] 2026-03-12 00:41:42,006 | INFO     | 
[2026-03-12 01:53:03] 2026-03-12 00:41:42,012 | INFO     | architecture information:
[2026-03-12 01:53:03] 2026-03-12 00:41:42,012 | INFO     | executing command: cat /etc/os-release
[2026-03-12 01:53:03] 2026-03-12 00:41:42,024 | INFO     | cat /etc/os-release:
[2026-03-12 01:53:03] NAME="CentOS Linux"
[2026-03-12 01:53:03] VERSION="7 (Core)"
[2026-03-12 01:53:03] ID="centos"
[2026-03-12 01:53:03] ID_LIKE="rhel fedora"
[2026-03-12 01:53:03] VERSION_ID="7"
[2026-03-12 01:53:03] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-12 01:53:03] ANSI_COLOR="0;31"
[2026-03-12 01:53:03] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-12 01:53:03] HOME_URL="https://www.centos.org/"
[2026-03-12 01:53:03] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-12 01:53:03] 
[2026-03-12 01:53:03] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-12 01:53:03] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-12 01:53:03] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-12 01:53:03] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-12 01:53:03] 
[2026-03-12 01:53:03] 2026-03-12 00:41:42,025 | INFO     | **************************************
[2026-03-12 01:53:03] 2026-03-12 00:41:42,527 | INFO     | executing command: df -mP /var/lib/boinc/var/slot124/slots/0
[2026-03-12 01:53:03] 2026-03-12 00:41:42,544 | INFO     | sufficient remaining disk space (26983006208 B)
[2026-03-12 01:53:03] 2026-03-12 00:41:42,544 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-12 01:53:03] 2026-03-12 00:41:42,544 | INFO     | current server update state: UPDATING_FINAL
[2026-03-12 01:53:03] 2026-03-12 00:41:42,545 | INFO     | update_server=False
[2026-03-12 01:53:03] 2026-03-12 00:41:42,545 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-12 01:53:03] 2026-03-12 00:41:42,632 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-12 01:53:03] 2026-03-12 00:41:42,950 | INFO     | all data control threads have been joined
[2026-03-12 01:53:03] 2026-03-12 00:41:42,971 | INFO     | all job control threads have been joined
[2026-03-12 01:53:03] 2026-03-12 00:41:43,177 | INFO     | all payload control threads have been joined
[2026-03-12 01:53:03] 2026-03-12 00:41:43,550 | INFO     | [job] retrieve thread has finished
[2026-03-12 01:53:03] 2026-03-12 00:41:43,779 | INFO     | [job] create_data_payload thread has finished
[2026-03-12 01:53:03] 2026-03-12 00:41:43,828 | INFO     | [job] validate thread has finished
[2026-03-12 01:53:03] 2026-03-12 00:41:43,950 | INFO     | [data] control thread has finished
[2026-03-12 01:53:03] 2026-03-12 00:41:43,952 | INFO     | [payload] failed_post thread has finished
[2026-03-12 01:53:03] 2026-03-12 00:41:43,977 | INFO     | [job] control thread has finished
[2026-03-12 01:53:03] 2026-03-12 00:41:44,178 | INFO     | [payload] control thread has finished
[2026-03-12 01:53:03] 2026-03-12 00:41:44,297 | INFO     | [payload] validate_pre thread has finished
[2026-03-12 01:53:03] 2026-03-12 00:41:44,326 | INFO     | [data] copytool_in thread has finished
[2026-03-12 01:53:03] 2026-03-12 00:41:44,487 | WARNING  | process 1554295 can no longer be monitored (due to stat problems) - aborting
[2026-03-12 01:53:03] 2026-03-12 00:41:44,563 | INFO     | [payload] execute_payloads thread has finished
[2026-03-12 01:53:03] 2026-03-12 00:41:44,637 | INFO     | [data] copytool_out thread has finished
[2026-03-12 01:53:03] 2026-03-12 00:41:44,800 | INFO     | using path: /var/lib/boinc/var/slot124/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-03-12 01:53:03] 2026-03-12 00:41:44,800 | INFO     | using path: /var/lib/boinc/var/slot124/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-03-12 01:53:03] 2026-03-12 00:41:44,800 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-03-12 01:53:03] 2026-03-12 00:41:44,800 | WARNING  | maxPSS not found in memory monitor output
[2026-03-12 01:53:03] 2026-03-12 00:41:44,801 | INFO     | skipping file size check of payload stdout file (/var/lib/boinc/var/slot124/slots/0/PanDA_Pilot-7035989428/payload.stdout) since it has not been created yet
[2026-03-12 01:53:03] 2026-03-12 00:41:44,801 | INFO     | executing command: df -mP /var/lib/boinc/var/slot124/slots/0
[2026-03-12 01:53:03] 2026-03-12 00:41:44,816 | INFO     | sufficient remaining disk space (26980909056 B)
[2026-03-12 01:53:03] 2026-03-12 00:41:44,816 | WARNING  | skipping size check of workdir since it has not been created yet
[2026-03-12 01:53:03] 2026-03-12 00:41:44,816 | INFO     | output file size check: skipping output file /var/lib/boinc/var/slot124/slots/0/PanDA_Pilot-7035989428/HITS.48847806._000045.pool.root.1 since it does not exist
[2026-03-12 01:53:03] 2026-03-12 00:41:44,954 | INFO     | [payload] validate_post thread has finished
[2026-03-12 01:53:03] 2026-03-12 00:41:45,268 | INFO     | number of running child processes to parent process 1554295: 1
[2026-03-12 01:53:03] 2026-03-12 00:41:45,271 | INFO     | maximum number of monitored processes: 6
[2026-03-12 01:53:03] 2026-03-12 00:41:45,272 | INFO     | aborting job monitoring since job object (job id=7035989428) has expired
[2026-03-12 01:53:03] 2026-03-12 00:41:45,272 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-12 01:53:03] 2026-03-12 00:41:45,272 | INFO     | will abort loop
[2026-03-12 01:53:03] 2026-03-12 00:41:45,298 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-12 01:53:03] 2026-03-12 00:41:45,920 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-12 01:53:03] 2026-03-12 00:41:46,277 | INFO     | [job] job monitor thread has finished
[2026-03-12 01:53:03] 2026-03-12 00:41:46,303 | INFO     | [job] queue monitor thread has finished
[2026-03-12 01:53:03] 2026-03-12 00:41:49,926 | INFO     | [data] queue_monitor thread has finished
[2026-03-12 01:53:03] 2026-03-12 00:41:53,475 | INFO     | job.realtimelogging is not enabled
[2026-03-12 01:53:03] 2026-03-12 00:41:54,480 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-12 01:53:03] 2026-03-12 00:42:12,220 | INFO     | PID=1547598 has CPU usage=8.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-12 01:53:03] 2026-03-12 00:42:12,220 | INFO     | .. there are 37 such processes running
[2026-03-12 01:53:03] 2026-03-12 00:42:12,221 | INFO     | found 0 job(s) in 20 queues
[2026-03-12 01:53:03] 2026-03-12 00:42:12,221 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-12 01:53:03] 2026-03-12 00:42:12,221 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-12 01:53:03] 2026-03-12 00:42:12,617 | INFO     | [monitor] cgroup control has ended
[2026-03-12 01:53:03] 2026-03-12 00:42:12,950 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23135516018496)>', '<ExcThread(monitor, started 23135274669824)>']
[2026-03-12 01:53:03] 2026-03-12 00:42:13,225 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-12 01:53:03] 2026-03-12 00:42:13,226 | INFO     | [monitor] control thread has ended
[2026-03-12 01:53:03] 2026-03-12 00:42:17,975 | INFO     | all workflow threads have been joined
[2026-03-12 01:53:03] 2026-03-12 00:42:17,975 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-12 01:53:03] 2026-03-12 00:42:17,975 | INFO     | traces error code: 0
[2026-03-12 01:53:03] 2026-03-12 00:42:17,975 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-12 01:53:03] 2026-03-12 00:42:18,093 [wrapper] ==== pilot stdout END ====
[2026-03-12 01:53:03] 2026-03-12 00:42:18,096 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-12 01:53:03] 2026-03-12 00:42:18,098 [wrapper] pilotpid: 1547598
[2026-03-12 01:53:03] 2026-03-12 00:42:18,101 [wrapper] Pilot exit status: 0
[2026-03-12 01:53:03] 2026-03-12 00:42:18,107 [wrapper] pandaids: 7035989428
[2026-03-12 01:53:03] 2026-03-12 00:42:18,243 [wrapper] cleanup supervisor_pilot 3227958 1547599
[2026-03-12 01:53:03] 2026-03-12 00:42:18,246 [wrapper] Test setup, not cleaning
[2026-03-12 01:53:03] 2026-03-12 00:42:18,249 [wrapper] apfmon messages muted
[2026-03-12 01:53:03] 2026-03-12 00:42:18,253 [wrapper] ==== wrapper stdout END ====
[2026-03-12 01:53:03] 2026-03-12 00:42:18,258 [wrapper] ==== wrapper stderr END ====
[2026-03-12 01:53:03]  *** Error codes and diagnostics ***
[2026-03-12 01:53:03]     "exeErrorCode": 0,
[2026-03-12 01:53:03]     "exeErrorDiag": "",
[2026-03-12 01:53:03]     "pilotErrorCode": 0,
[2026-03-12 01:53:03]     "pilotErrorDiag": "",
[2026-03-12 01:53:03]  *** Listing of results directory ***
[2026-03-12 01:53:03] total 521432
[2026-03-12 01:53:03] -rw-r--r--. 1 boinc boinc    584627 Mar  2 13:41 pilot3.tar.gz
[2026-03-12 01:53:03] -rwx------. 1 boinc boinc     36322 Mar  2 13:45 runpilot2-wrapper.sh
[2026-03-12 01:53:03] -rw-r--r--. 1 boinc boinc      5111 Mar  2 13:46 queuedata.json
[2026-03-12 01:53:03] -rw-r--r--. 1 boinc boinc       100 Mar 11 21:59 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-12 01:53:03] -rwxr-xr-x. 1 boinc boinc      7986 Mar 11 21:59 run_atlas
[2026-03-12 01:53:03] -rw-r--r--. 1 boinc boinc       105 Mar 11 21:59 job.xml
[2026-03-12 01:53:03] -rw-r--r--. 2 boinc boinc 260321011 Mar 11 21:59 EVNT.48454523._000002.pool.root.1
[2026-03-12 01:53:03] -rw-r--r--. 1 boinc boinc      6709 Mar 11 21:59 init_data.xml
[2026-03-12 01:53:03] -rw-r--r--. 2 boinc boinc     15845 Mar 11 21:59 start_atlas.sh
[2026-03-12 01:53:03] drwxrwx--x. 2 boinc boinc      4096 Mar 11 21:59 shared
[2026-03-12 01:53:03] -rw-r--r--. 2 boinc boinc    597976 Mar 11 21:59 input.tar.gz
[2026-03-12 01:53:03] -rw-r--r--. 1 boinc boinc         0 Mar 11 21:59 boinc_lockfile
[2026-03-12 01:53:03] -rw-r--r--. 1 boinc boinc      2624 Mar 11 21:59 pandaJob.out
[2026-03-12 01:53:03] -rw-------. 1 boinc boinc   1006235 Mar 11 21:59 agis_schedconf.cvmfs.json
[2026-03-12 01:53:03] -rw-------. 1 boinc boinc       445 Mar 11 21:59 workernode_map.json
[2026-03-12 01:53:03] drwx------. 5 boinc boinc      4096 Mar 11 21:59 pilot3
[2026-03-12 01:53:03] -rw-------. 1 boinc boinc 265153358 Mar 12 01:41 HITS.48847806._000045.pool.root.1
[2026-03-12 01:53:03] -rw-r--r--. 1 boinc boinc       529 Mar 12 01:41 boinc_task_state.xml
[2026-03-12 01:53:03] -rw-------. 1 boinc boinc      1030 Mar 12 01:41 memory_monitor_summary.json
[2026-03-12 01:53:03] -rw-------. 1 boinc boinc   1511578 Mar 12 01:41 agis_ddmendpoints.agis.ALL.json
[2026-03-12 01:53:03] -rw-------. 1 boinc boinc    402058 Mar 12 01:41 log.48847806._000045.job.log.tgz.1
[2026-03-12 01:53:03] -rw-------. 1 boinc boinc      6349 Mar 12 01:41 heartbeat.json
[2026-03-12 01:53:03] -rw-------. 1 boinc boinc        95 Mar 12 01:42 pilot_heartbeat.json
[2026-03-12 01:53:03] -rw-------. 1 boinc boinc      6447 Mar 12 01:42 pilotlog.txt
[2026-03-12 01:53:03] -rw-------. 1 boinc boinc   1864566 Mar 12 01:42 log.48847806._000045.job.log.1
[2026-03-12 01:53:03] -rw-------. 1 boinc boinc       357 Mar 12 01:42 output.list
[2026-03-12 01:53:03] -rw-r--r--. 1 boinc boinc       620 Mar 12 01:42 runtime_log
[2026-03-12 01:53:03] -rw-------. 1 boinc boinc   2283520 Mar 12 01:42 result.tar.gz
[2026-03-12 01:53:03] -rw-------. 1 boinc boinc       665 Mar 12 01:42 vrjMDmFpHH9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmrTDLDmTyD6Un.diag
[2026-03-12 01:53:03] -rw-r--r--. 1 boinc boinc      9222 Mar 12 01:42 runtime_log.err
[2026-03-12 01:53:03] -rw-r--r--. 1 boinc boinc        27 Mar 12 01:52 wrapper_checkpoint.txt
[2026-03-12 01:53:03] -rw-r--r--. 1 boinc boinc      8192 Mar 12 01:53 boinc_mmap_file
[2026-03-12 01:53:03] -rw-r--r--. 1 boinc boinc     21273 Mar 12 01:53 stderr.txt
[2026-03-12 01:53:03] HITS file was successfully produced:
[2026-03-12 01:53:03] -rw-------. 1 boinc boinc 265153358 Mar 12 01:41 shared/HITS.pool.root.1
[2026-03-12 01:53:03]  *** Contents of shared directory: ***
[2026-03-12 01:53:03] total 516000
[2026-03-12 01:53:03] -rw-r--r--. 2 boinc boinc 260321011 Mar 11 21:59 ATLAS.root_0
[2026-03-12 01:53:03] -rw-r--r--. 2 boinc boinc     15845 Mar 11 21:59 start_atlas.sh
[2026-03-12 01:53:03] -rw-r--r--. 2 boinc boinc    597976 Mar 11 21:59 input.tar.gz
[2026-03-12 01:53:03] -rw-------. 1 boinc boinc 265153358 Mar 12 01:41 HITS.pool.root.1
[2026-03-12 01:53:03] -rw-------. 1 boinc boinc   2283520 Mar 12 01:42 result.tar.gz
01:53:04 (1542326): run_atlas exited; CPU time 52339.368869
01:53:04 (1542326): called boinc_finish(0)

</stderr_txt>
]]>

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