Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
10:48:43 (1854123): wrapper (7.7.26015): starting
10:48:43 (1854123): wrapper: running run_atlas (--nthreads 2)
[2026-03-11 10:48:43] Arguments: --nthreads 2
[2026-03-11 10:48:43] Threads: 2
[2026-03-11 10:48:43] Checking for CVMFS
[2026-03-11 10:48:43] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-11 10:48:43] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-11 10:48:43] Running cvmfs_config stat atlas.cern.ch
[2026-03-11 10:48:43] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-11 10:48:43] 2.9.2.0 29052 19672 59972 157149 0 50 27251366 36864000 0 130560 0 5293720 99.976 732115 12368 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-11 10:48:43] CVMFS is ok
[2026-03-11 10:48:43] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-11 10:48:43] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-11 10:48:43] Further information can be found at the LHC@home message board.
[2026-03-11 10:48:43] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-11 10:48:43] Checking for apptainer binary...
[2026-03-11 10:48:43] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-11 10:48:43] Running /usr/bin/apptainer --version
[2026-03-11 10:48:43] apptainer version 1.4.1-1.1
[2026-03-11 10:48:43] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-11 10:48:43] magicA252b
[2026-03-11 10:48:43] apptainer works
[2026-03-11 10:48:43] Set ATHENA_PROC_NUMBER=2
[2026-03-11 10:48:43] Set ATHENA_CORE_NUMBER=2
[2026-03-11 10:48:44] Starting ATLAS job with PandaID=7036098681
[2026-03-11 10:48:44] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-11 13:09:22]  *** The last 200 lines of the pilot log: ***
[2026-03-11 13:09:22] 2026-03-11 12:08:34,330 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-11 13:09:22] 2026-03-11 12:08:34,330 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-11 13:09:22] 2026-03-11 12:08:34,330 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-11 13:09:22] 2026-03-11 12:08:34,330 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-11 13:09:22] 2026-03-11 12:08:34,330 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-11 13:09:22] 2026-03-11 12:08:34,330 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-11 13:09:22] 2026-03-11 12:08:34,330 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-11 13:09:22] 2026-03-11 12:08:34,330 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-11 13:09:22] 2026-03-11 12:08:34,330 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-11 13:09:22] 2026-03-11 12:08:34,330 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-11 13:09:22] 2026-03-11 12:08:34,330 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-11 13:09:22] 2026-03-11 12:08:34,330 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-11 13:09:22] 2026-03-11 12:08:34,330 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-11 13:09:22] 2026-03-11 12:08:34,330 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-11 13:09:22] 2026-03-11 12:08:34,330 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-11 13:09:22] 2026-03-11 12:08:34,330 | INFO     | job 7036098681 has completed (purged errors)
[2026-03-11 13:09:22] 2026-03-11 12:08:34,331 | INFO     | overall cleanup function is called
[2026-03-11 13:09:22] 2026-03-11 12:08:35,337 | INFO     | --- collectZombieJob: --- 10, [1862551]
[2026-03-11 13:09:22] 2026-03-11 12:08:35,337 | INFO     | zombie collector waiting for pid 1862551
[2026-03-11 13:09:22] 2026-03-11 12:08:35,398 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-11 13:09:22] 2026-03-11 12:08:35,398 | INFO     | collected zombie processes
[2026-03-11 13:09:22] 2026-03-11 12:08:35,398 | INFO     | will attempt to kill all subprocesses of pid=1862551
[2026-03-11 13:09:22] 2026-03-11 12:08:35,428 | INFO     | process IDs to be killed: [1862551] (in reverse order)
[2026-03-11 13:09:22] 2026-03-11 12:08:35,448 | WARNING  | found no corresponding commands to process id(s)
[2026-03-11 13:09:22] 2026-03-11 12:08:35,448 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-11 13:09:22] 2026-03-11 12:08:35,449 | INFO     | did not find any defunct processes belonging to 1862551
[2026-03-11 13:09:22] 2026-03-11 12:08:35,450 | INFO     | did not find any defunct processes belonging to 1862551
[2026-03-11 13:09:22] 2026-03-11 12:08:35,450 | INFO     | ready for new job
[2026-03-11 13:09:22] 2026-03-11 12:08:35,450 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-11 13:09:22] 2026-03-11 12:08:35,450 | INFO     | **************************************
[2026-03-11 13:09:22] 2026-03-11 12:08:35,450 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-11 13:09:22] 2026-03-11 12:08:35,450 | INFO     | **************************************
[2026-03-11 13:09:22] 2026-03-11 12:08:35,450 | INFO     | 
[2026-03-11 13:09:22] 2026-03-11 12:08:35,451 | INFO     | architecture information:
[2026-03-11 13:09:22] 2026-03-11 12:08:35,451 | INFO     | executing command: cat /etc/os-release
[2026-03-11 13:09:22] 2026-03-11 12:08:35,459 | INFO     | cat /etc/os-release:
[2026-03-11 13:09:22] NAME="CentOS Linux"
[2026-03-11 13:09:22] VERSION="7 (Core)"
[2026-03-11 13:09:22] ID="centos"
[2026-03-11 13:09:22] ID_LIKE="rhel fedora"
[2026-03-11 13:09:22] VERSION_ID="7"
[2026-03-11 13:09:22] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-11 13:09:22] ANSI_COLOR="0;31"
[2026-03-11 13:09:22] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-11 13:09:22] HOME_URL="https://www.centos.org/"
[2026-03-11 13:09:22] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-11 13:09:22] 
[2026-03-11 13:09:22] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-11 13:09:22] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-11 13:09:22] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-11 13:09:22] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-11 13:09:22] 
[2026-03-11 13:09:22] 2026-03-11 12:08:35,459 | INFO     | **************************************
[2026-03-11 13:09:22] 2026-03-11 12:08:35,963 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-11 13:09:22] 2026-03-11 12:08:35,975 | INFO     | sufficient remaining disk space (333127352320 B)
[2026-03-11 13:09:22] 2026-03-11 12:08:35,975 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-11 13:09:22] 2026-03-11 12:08:35,975 | INFO     | current server update state: UPDATING_FINAL
[2026-03-11 13:09:22] 2026-03-11 12:08:35,975 | INFO     | update_server=False
[2026-03-11 13:09:22] 2026-03-11 12:08:35,975 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-11 13:09:22] 2026-03-11 12:08:35,976 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-11 13:09:22] 2026-03-11 12:08:35,976 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-11 13:09:22] 2026-03-11 12:08:36,014 | INFO     | all data control threads have been joined
[2026-03-11 13:09:22] 2026-03-11 12:08:36,190 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-03-11 13:09:22] 2026-03-11 12:08:36,191 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-03-11 13:09:22] 2026-03-11 12:08:36,191 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-11 13:09:22] 2026-03-11 12:08:36,191 | INFO     | will abort loop
[2026-03-11 13:09:22] 2026-03-11 12:08:36,795 | INFO     | all payload control threads have been joined
[2026-03-11 13:09:22] 2026-03-11 12:08:36,958 | INFO     | all job control threads have been joined
[2026-03-11 13:09:22] 2026-03-11 12:08:36,981 | INFO     | [job] retrieve thread has finished
[2026-03-11 13:09:22] 2026-03-11 12:08:36,982 | INFO     | [job] queue monitor thread has finished
[2026-03-11 13:09:22] 2026-03-11 12:08:37,014 | INFO     | [payload] failed_post thread has finished
[2026-03-11 13:09:22] 2026-03-11 12:08:37,019 | INFO     | [data] control thread has finished
[2026-03-11 13:09:22] 2026-03-11 12:08:37,197 | INFO     | [job] job monitor thread has finished
[2026-03-11 13:09:22] 2026-03-11 12:08:37,484 | INFO     | [payload] execute_payloads thread has finished
[2026-03-11 13:09:22] 2026-03-11 12:08:37,507 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-11 13:09:22] 2026-03-11 12:08:37,801 | INFO     | [payload] control thread has finished
[2026-03-11 13:09:22] 2026-03-11 12:08:37,808 | INFO     | [payload] validate_post thread has finished
[2026-03-11 13:09:22] 2026-03-11 12:08:37,928 | INFO     | [job] create_data_payload thread has finished
[2026-03-11 13:09:22] 2026-03-11 12:08:37,964 | INFO     | [job] control thread has finished
[2026-03-11 13:09:22] 2026-03-11 12:08:37,981 | INFO     | [data] copytool_out thread has finished
[2026-03-11 13:09:22] 2026-03-11 12:08:38,044 | INFO     | [payload] validate_pre thread has finished
[2026-03-11 13:09:22] 2026-03-11 12:08:38,056 | INFO     | [job] validate thread has finished
[2026-03-11 13:09:22] 2026-03-11 12:08:38,323 | INFO     | [data] copytool_in thread has finished
[2026-03-11 13:09:22] 2026-03-11 12:08:39,389 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-11 13:09:22] 2026-03-11 12:08:43,396 | INFO     | [data] queue_monitor thread has finished
[2026-03-11 13:09:22] 2026-03-11 12:09:05,684 | INFO     | PID=1858145 has CPU usage=1.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-11 13:09:22] 2026-03-11 12:09:05,684 | INFO     | found 0 job(s) in 20 queues
[2026-03-11 13:09:22] 2026-03-11 12:09:05,684 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-11 13:09:22] 2026-03-11 12:09:05,684 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-11 13:09:22] 2026-03-11 12:09:16,246 | INFO     | [monitor] cgroup control has ended
[2026-03-11 13:09:22] 2026-03-11 12:09:17,586 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140437957080896)>', '<ExcThread(monitor, started 140437595592448)>']
[2026-03-11 13:09:22] 2026-03-11 12:09:17,746 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-11 13:09:22] 2026-03-11 12:09:17,747 | INFO     | [monitor] control thread has ended
[2026-03-11 13:09:22] 2026-03-11 12:09:22,611 | INFO     | all workflow threads have been joined
[2026-03-11 13:09:22] 2026-03-11 12:09:22,611 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-11 13:09:22] 2026-03-11 12:09:22,612 | INFO     | traces error code: 0
[2026-03-11 13:09:22] 2026-03-11 12:09:22,612 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-11 13:09:22] 2026-03-11 12:09:22,650 [wrapper] ==== pilot stdout END ====
[2026-03-11 13:09:22] 2026-03-11 12:09:22,653 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-11 13:09:22] 2026-03-11 12:09:22,655 [wrapper] pilotpid: 1858145
[2026-03-11 13:09:22] 2026-03-11 12:09:22,657 [wrapper] Pilot exit status: 0
[2026-03-11 13:09:22] 2026-03-11 12:09:22,663 [wrapper] pandaids: 7036098681
[2026-03-11 13:09:22] 2026-03-11 12:09:22,675 [wrapper] cleanup supervisor_pilot 1868790 1858146
[2026-03-11 13:09:22] 2026-03-11 12:09:22,677 [wrapper] Test setup, not cleaning
[2026-03-11 13:09:22] 2026-03-11 12:09:22,679 [wrapper] apfmon messages muted
[2026-03-11 13:09:22] 2026-03-11 12:09:22,681 [wrapper] ==== wrapper stdout END ====
[2026-03-11 13:09:22] 2026-03-11 12:09:22,683 [wrapper] ==== wrapper stderr END ====
[2026-03-11 13:09:22]  *** Error codes and diagnostics ***
[2026-03-11 13:09:22]     "exeErrorCode": 0,
[2026-03-11 13:09:22]     "exeErrorDiag": "",
[2026-03-11 13:09:22]     "pilotErrorCode": 0,
[2026-03-11 13:09:22]     "pilotErrorDiag": "",
[2026-03-11 13:09:22]  *** Listing of results directory ***
[2026-03-11 13:09:22] total 493920
[2026-03-11 13:09:22] -rw-r--r-- 1 boinc boinc    584627 Mar  2 20:44 pilot3.tar.gz
[2026-03-11 13:09:22] -rw-r--r-- 1 boinc boinc      5111 Mar  2 20:46 queuedata.json
[2026-03-11 13:09:22] -rwx------ 1 boinc boinc     36322 Mar  2 20:46 runpilot2-wrapper.sh
[2026-03-11 13:09:22] -rw-r--r-- 1 boinc boinc       100 Mar 11 10:48 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-11 13:09:22] -rwxr-xr-x 1 boinc boinc      7986 Mar 11 10:48 run_atlas
[2026-03-11 13:09:22] -rw-r--r-- 1 boinc boinc       105 Mar 11 10:48 job.xml
[2026-03-11 13:09:22] -rw-r--r-- 2 boinc boinc 285706170 Mar 11 10:48 EVNT.48220117._000124.pool.root.1
[2026-03-11 13:09:22] -rw-r--r-- 2 boinc boinc    597964 Mar 11 10:48 input.tar.gz
[2026-03-11 13:09:22] -rw-r--r-- 2 boinc boinc     15845 Mar 11 10:48 start_atlas.sh
[2026-03-11 13:09:22] drwxrwx--x 2 boinc boinc      4096 Mar 11 10:48 shared
[2026-03-11 13:09:22] -rw-r--r-- 1 boinc boinc         0 Mar 11 10:48 boinc_setup_complete
[2026-03-11 13:09:22] -rw-r--r-- 1 boinc boinc      6208 Mar 11 10:48 init_data.xml
[2026-03-11 13:09:22] -rw-r--r-- 1 boinc boinc         0 Mar 11 10:48 boinc_lockfile
[2026-03-11 13:09:22] -rw-r--r-- 1 boinc boinc      2572 Mar 11 10:48 pandaJob.out
[2026-03-11 13:09:22] -rw------- 1 boinc boinc   1006978 Mar 11 10:48 agis_schedconf.cvmfs.json
[2026-03-11 13:09:22] -rw------- 1 boinc boinc   1511578 Mar 11 10:48 agis_ddmendpoints.agis.ALL.json
[2026-03-11 13:09:22] -rw------- 1 boinc boinc       423 Mar 11 10:49 workernode_map.json
[2026-03-11 13:09:22] drwx------ 5 boinc boinc      4096 Mar 11 10:49 pilot3
[2026-03-11 13:09:22] -rw------- 1 boinc boinc 213135321 Mar 11 13:08 HITS.48838447._002990.pool.root.1
[2026-03-11 13:09:22] -rw-r--r-- 1 boinc boinc       529 Mar 11 13:08 boinc_task_state.xml
[2026-03-11 13:09:22] -rw------- 1 boinc boinc      1015 Mar 11 13:08 memory_monitor_summary.json
[2026-03-11 13:09:22] -rw------- 1 boinc boinc        95 Mar 11 13:08 pilot_heartbeat.json
[2026-03-11 13:09:22] -rw------- 1 boinc boinc    300216 Mar 11 13:08 log.48838447._002990.job.log.tgz.1
[2026-03-11 13:09:22] -rw------- 1 boinc boinc      6299 Mar 11 13:08 heartbeat.json
[2026-03-11 13:09:22] -rw-r--r-- 1 boinc boinc      8192 Mar 11 13:09 boinc_mmap_file
[2026-03-11 13:09:22] -rw-r--r-- 1 boinc boinc        27 Mar 11 13:09 wrapper_checkpoint.txt
[2026-03-11 13:09:22] -rw------- 1 boinc boinc      4934 Mar 11 13:09 pilotlog.txt
[2026-03-11 13:09:22] -rw------- 1 boinc boinc   1202799 Mar 11 13:09 log.48838447._002990.job.log.1
[2026-03-11 13:09:22] -rw------- 1 boinc boinc       357 Mar 11 13:09 output.list
[2026-03-11 13:09:22] -rw-r--r-- 1 boinc boinc       620 Mar 11 13:09 runtime_log
[2026-03-11 13:09:22] -rw------- 1 boinc boinc   1525760 Mar 11 13:09 result.tar.gz
[2026-03-11 13:09:22] -rw-r--r-- 1 boinc boinc      8916 Mar 11 13:09 runtime_log.err
[2026-03-11 13:09:22] -rw------- 1 boinc boinc       661 Mar 11 13:09 FIpMDmzOOH9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmoXELDmKLp5En.diag
[2026-03-11 13:09:22] -rw-r--r-- 1 boinc boinc     12579 Mar 11 13:09 stderr.txt
[2026-03-11 13:09:22] HITS file was successfully produced:
[2026-03-11 13:09:22] -rw------- 1 boinc boinc 213135321 Mar 11 13:08 shared/HITS.pool.root.1
[2026-03-11 13:09:22]  *** Contents of shared directory: ***
[2026-03-11 13:09:22] total 489244
[2026-03-11 13:09:22] -rw-r--r-- 2 boinc boinc 285706170 Mar 11 10:48 ATLAS.root_0
[2026-03-11 13:09:22] -rw-r--r-- 2 boinc boinc    597964 Mar 11 10:48 input.tar.gz
[2026-03-11 13:09:22] -rw-r--r-- 2 boinc boinc     15845 Mar 11 10:48 start_atlas.sh
[2026-03-11 13:09:22] -rw------- 1 boinc boinc 213135321 Mar 11 13:08 HITS.pool.root.1
[2026-03-11 13:09:22] -rw------- 1 boinc boinc   1525760 Mar 11 13:09 result.tar.gz
13:09:24 (1854123): run_atlas exited; CPU time 16315.965663
13:09:24 (1854123): called boinc_finish(0)

</stderr_txt>
]]>

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