Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
08:31:35 (1616386): wrapper (7.7.26015): starting
08:31:35 (1616386): wrapper: running run_atlas (--nthreads 4)
[2026-03-12 08:31:35] Arguments: --nthreads 4
[2026-03-12 08:31:35] Threads: 4
[2026-03-12 08:31:35] Checking for CVMFS
[2026-03-12 08:31:35] No cvmfs_config command found, will try listing directly
[2026-03-12 08:31:35] CVMFS is ok
[2026-03-12 08:31:35] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-12 08:31:35] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-12 08:31:35] Further information can be found at the LHC@home message board.
[2026-03-12 08:31:35] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-12 08:31:35] Checking for apptainer binary...
[2026-03-12 08:31:35] which: no apptainer in ((null))
[2026-03-12 08:31:35] apptainer is not installed, using version from CVMFS
[2026-03-12 08:31:35] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-12 08:31:35] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot216/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut25.grid.cesnet.cz
[2026-03-12 08:31:35] apptainer works
[2026-03-12 08:31:35] Set ATHENA_PROC_NUMBER=4
[2026-03-12 08:31:35] Set ATHENA_CORE_NUMBER=4
[2026-03-12 08:31:35] Starting ATLAS job with PandaID=7049187146
[2026-03-12 08:31:35] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot216/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-12 10:19:14]  *** The last 200 lines of the pilot log: ***
[2026-03-12 10:19:14] 2026-03-12 09:15:07,530 | INFO     | extracted standard info from prmon json
[2026-03-12 10:19:14] 2026-03-12 09:15:07,530 | INFO     | extracted standard memory fields from prmon json
[2026-03-12 10:19:14] 2026-03-12 09:15:07,530 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-12 10:19:14] 2026-03-12 09:15:07,530 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-12 10:19:14] 2026-03-12 09:15:07,530 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-12 10:19:14] 2026-03-12 09:15:07,531 | INFO     | fitting pss+swap vs Time
[2026-03-12 10:19:14] 2026-03-12 09:15:07,532 | INFO     | sum of square deviations: 329031285.5
[2026-03-12 10:19:14] 2026-03-12 09:15:07,532 | INFO     | sum of deviations: 4709121523.5
[2026-03-12 10:19:14] 2026-03-12 09:15:07,532 | INFO     | mean x: 1773303809.5
[2026-03-12 10:19:14] 2026-03-12 09:15:07,532 | INFO     | mean y: 2285208.362745098
[2026-03-12 10:19:14] 2026-03-12 09:15:07,532 | INFO     | intersect: -25377377775.147053
[2026-03-12 10:19:14] 2026-03-12 09:15:07,532 | INFO     | chi2: 1.8068410220043176
[2026-03-12 10:19:14] 2026-03-12 09:15:07,532 | INFO     | sum of square deviations: 282974608.0
[2026-03-12 10:19:14] 2026-03-12 09:15:07,532 | INFO     | sum of deviations: 10118660419.0
[2026-03-12 10:19:14] 2026-03-12 09:15:07,533 | INFO     | mean x: 1773303657.0
[2026-03-12 10:19:14] 2026-03-12 09:15:07,533 | INFO     | mean y: 2302342.907216495
[2026-03-12 10:19:14] 2026-03-12 09:15:07,533 | INFO     | intersect: -63407830643.13742
[2026-03-12 10:19:14] 2026-03-12 09:15:07,533 | INFO     | chi2: 1.1186523173457674
[2026-03-12 10:19:14] 2026-03-12 09:15:07,533 | INFO     | current chi2=1.1186523173457674 (change=38.08794997886127 %)
[2026-03-12 10:19:14] 2026-03-12 09:15:07,533 | INFO     | sum of square deviations: 241429643.0
[2026-03-12 10:19:14] 2026-03-12 09:15:07,533 | INFO     | sum of deviations: 9518532384.5
[2026-03-12 10:19:14] 2026-03-12 09:15:07,533 | INFO     | mean x: 1773303504.5
[2026-03-12 10:19:14] 2026-03-12 09:15:07,533 | INFO     | mean y: 2300137.9891304346
[2026-03-12 10:19:14] 2026-03-12 09:15:07,533 | INFO     | intersect: -69911429698.1213
[2026-03-12 10:19:14] 2026-03-12 09:15:07,533 | INFO     | chi2: 1.120716105191856
[2026-03-12 10:19:14] 2026-03-12 09:15:07,533 | INFO     | current chi2=1.120716105191856 (change=-0.18448876510489667 %)
[2026-03-12 10:19:14] 2026-03-12 09:15:07,533 | INFO     | right removable region: 91
[2026-03-12 10:19:14] 2026-03-12 09:15:07,533 | INFO     | sum of square deviations: 282974608.0
[2026-03-12 10:19:14] 2026-03-12 09:15:07,534 | INFO     | sum of deviations: -5237183121.0
[2026-03-12 10:19:14] 2026-03-12 09:15:07,534 | INFO     | mean x: 1773303962.0
[2026-03-12 10:19:14] 2026-03-12 09:15:07,534 | INFO     | mean y: 2317156.824742268
[2026-03-12 10:19:14] 2026-03-12 09:15:07,534 | INFO     | intersect: 32821931764.04358
[2026-03-12 10:19:14] 2026-03-12 09:15:07,534 | INFO     | chi2: 0.7161988427748085
[2026-03-12 10:19:14] 2026-03-12 09:15:07,534 | INFO     | current chi2=0.7161988427748085 (change=60.36182297984725 %)
[2026-03-12 10:19:14] 2026-03-12 09:15:07,534 | INFO     | sum of square deviations: 241429643.0
[2026-03-12 10:19:14] 2026-03-12 09:15:07,534 | INFO     | sum of deviations: -5167951537.0
[2026-03-12 10:19:14] 2026-03-12 09:15:07,534 | INFO     | mean x: 1773304114.5
[2026-03-12 10:19:14] 2026-03-12 09:15:07,534 | INFO     | mean y: 2316887.9782608696
[2026-03-12 10:19:14] 2026-03-12 09:15:07,534 | INFO     | intersect: 37960993420.912125
[2026-03-12 10:19:14] 2026-03-12 09:15:07,534 | INFO     | chi2: 0.7168349919940871
[2026-03-12 10:19:14] 2026-03-12 09:15:07,534 | INFO     | current chi2=0.7168349919940871 (change=-0.08882298899198192 %)
[2026-03-12 10:19:14] 2026-03-12 09:15:07,534 | INFO     | left removable region: 20
[2026-03-12 10:19:14] 2026-03-12 09:15:07,535 | INFO     | sum of square deviations: 110960220.0
[2026-03-12 10:19:14] 2026-03-12 09:15:07,535 | INFO     | sum of deviations: 115652584.00000003
[2026-03-12 10:19:14] 2026-03-12 09:15:07,535 | INFO     | mean x: 1773304084.0
[2026-03-12 10:19:14] 2026-03-12 09:15:07,535 | INFO     | mean y: 2337297.0422535213
[2026-03-12 10:19:14] 2026-03-12 09:15:07,535 | INFO     | intersect: -1845957520.0764682
[2026-03-12 10:19:14] 2026-03-12 09:15:07,535 | INFO     | chi2: 0.00020938967338242397
[2026-03-12 10:19:14] 2026-03-12 09:15:07,535 | INFO     | current memory leak: 1.04 B/s (using 71 data points, chi2=0.00)
[2026-03-12 10:19:14] 2026-03-12 09:15:07,535 | INFO     | could have reported an average CPU frequency of 3586 MHz (7 samples)
[2026-03-12 10:19:14] 2026-03-12 09:15:07,535 | INFO     | ..............................
[2026-03-12 10:19:14] 2026-03-12 09:15:07,535 | INFO     | . Timing measurements:
[2026-03-12 10:19:14] 2026-03-12 09:15:07,535 | INFO     | . get job = 0 s
[2026-03-12 10:19:14] 2026-03-12 09:15:07,535 | INFO     | . initial setup = 5 s
[2026-03-12 10:19:14] 2026-03-12 09:15:07,535 | INFO     | . payload setup = 5 s
[2026-03-12 10:19:14] 2026-03-12 09:15:07,535 | INFO     | . stage-in = 0 s
[2026-03-12 10:19:14] 2026-03-12 09:15:07,535 | INFO     | . payload execution = 6177 s
[2026-03-12 10:19:14] 2026-03-12 09:15:07,535 | INFO     | . stage-out = 0 s
[2026-03-12 10:19:14] 2026-03-12 09:15:07,536 | INFO     | . log creation = 0 s
[2026-03-12 10:19:14] 2026-03-12 09:15:07,536 | INFO     | ..............................
[2026-03-12 10:19:14] 2026-03-12 09:15:07,589 | INFO     | 
[2026-03-12 10:19:14] 2026-03-12 09:15:07,589 | INFO     | job summary report
[2026-03-12 10:19:14] 2026-03-12 09:15:07,589 | INFO     | --------------------------------------------------
[2026-03-12 10:19:14] 2026-03-12 09:15:07,589 | INFO     | PanDA job id: 7049187146
[2026-03-12 10:19:14] 2026-03-12 09:15:07,589 | INFO     | task id: 48967011
[2026-03-12 10:19:14] 2026-03-12 09:15:07,589 | INFO     | errors: (none)
[2026-03-12 10:19:14] 2026-03-12 09:15:07,589 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-12 10:19:14] 2026-03-12 09:15:07,589 | INFO     | pilot state: finished 
[2026-03-12 10:19:14] 2026-03-12 09:15:07,589 | INFO     | transexitcode: 0
[2026-03-12 10:19:14] 2026-03-12 09:15:07,589 | INFO     | exeerrorcode: 0
[2026-03-12 10:19:14] 2026-03-12 09:15:07,590 | INFO     | exeerrordiag: 
[2026-03-12 10:19:14] 2026-03-12 09:15:07,590 | INFO     | exitcode: 0
[2026-03-12 10:19:14] 2026-03-12 09:15:07,590 | INFO     | exitmsg: OK
[2026-03-12 10:19:14] 2026-03-12 09:15:07,590 | INFO     | cpuconsumptiontime: 23736 s
[2026-03-12 10:19:14] 2026-03-12 09:15:07,590 | INFO     | nevents: 400
[2026-03-12 10:19:14] 2026-03-12 09:15:07,590 | INFO     | neventsw: 0
[2026-03-12 10:19:14] 2026-03-12 09:15:07,590 | INFO     | pid: 1647632
[2026-03-12 10:19:14] 2026-03-12 09:15:07,590 | INFO     | pgrp: 1647632
[2026-03-12 10:19:14] 2026-03-12 09:15:07,590 | INFO     | corecount: 4
[2026-03-12 10:19:14] 2026-03-12 09:15:07,590 | INFO     | event service: False
[2026-03-12 10:19:14] 2026-03-12 09:15:07,590 | INFO     | sizes: {0: 2279988, 1: 2280250, 11: 2280278, 6186: 2307151, 6187: 2316228, 6188: 2316550}
[2026-03-12 10:19:14] 2026-03-12 09:15:07,590 | INFO     | --------------------------------------------------
[2026-03-12 10:19:14] 2026-03-12 09:15:07,590 | INFO     | 
[2026-03-12 10:19:14] 2026-03-12 09:15:07,590 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot216/slots/0
[2026-03-12 10:19:14] 2026-03-12 09:15:07,608 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-12 10:19:14] 2026-03-12 09:15:07,608 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-12 10:19:14] 2026-03-12 09:15:07,608 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-12 10:19:14] 2026-03-12 09:15:07,609 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-12 10:19:14] 2026-03-12 09:15:07,609 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-12 10:19:14] 2026-03-12 09:15:07,609 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-12 10:19:14] 2026-03-12 09:15:07,609 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-12 10:19:14] 2026-03-12 09:15:07,609 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-12 10:19:14] 2026-03-12 09:15:07,609 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-12 10:19:14] 2026-03-12 09:15:07,609 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-12 10:19:14] 2026-03-12 09:15:07,609 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-12 10:19:14] 2026-03-12 09:15:07,609 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-12 10:19:14] 2026-03-12 09:15:07,609 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-12 10:19:14] 2026-03-12 09:15:07,609 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-12 10:19:14] 2026-03-12 09:15:07,609 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-12 10:19:14] 2026-03-12 09:15:07,609 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-12 10:19:14] 2026-03-12 09:15:07,609 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-12 10:19:14] 2026-03-12 09:15:07,609 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-12 10:19:14] 2026-03-12 09:15:07,609 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-12 10:19:14] 2026-03-12 09:15:07,609 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-12 10:19:14] 2026-03-12 09:15:07,609 | INFO     | job 7049187146 has completed (purged errors)
[2026-03-12 10:19:14] 2026-03-12 09:15:07,609 | INFO     | overall cleanup function is called
[2026-03-12 10:19:14] 2026-03-12 09:15:08,617 | INFO     | --- collectZombieJob: --- 10, [1647632]
[2026-03-12 10:19:14] 2026-03-12 09:15:08,617 | INFO     | zombie collector waiting for pid 1647632
[2026-03-12 10:19:14] 2026-03-12 09:15:08,617 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-12 10:19:14] 2026-03-12 09:15:08,617 | INFO     | collected zombie processes
[2026-03-12 10:19:14] 2026-03-12 09:15:08,617 | INFO     | will attempt to kill all subprocesses of pid=1647632
[2026-03-12 10:19:14] 2026-03-12 09:15:09,105 | INFO     | process IDs to be killed: [1647632] (in reverse order)
[2026-03-12 10:19:14] 2026-03-12 09:15:09,329 | WARNING  | found no corresponding commands to process id(s)
[2026-03-12 10:19:14] 2026-03-12 09:15:09,330 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-12 10:19:14] 2026-03-12 09:15:09,360 | INFO     | did not find any defunct processes belonging to 1647632
[2026-03-12 10:19:14] 2026-03-12 09:15:09,392 | INFO     | did not find any defunct processes belonging to 1647632
[2026-03-12 10:19:14] 2026-03-12 09:15:09,392 | INFO     | ready for new job
[2026-03-12 10:19:14] 2026-03-12 09:15:09,392 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-12 10:19:14] 2026-03-12 09:15:09,393 | INFO     | **************************************
[2026-03-12 10:19:14] 2026-03-12 09:15:09,394 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-12 10:19:14] 2026-03-12 09:15:09,394 | INFO     | **************************************
[2026-03-12 10:19:14] 2026-03-12 09:15:09,394 | INFO     | 
[2026-03-12 10:19:14] 2026-03-12 09:15:09,399 | INFO     | architecture information:
[2026-03-12 10:19:14] 2026-03-12 09:15:09,400 | INFO     | executing command: cat /etc/os-release
[2026-03-12 10:19:14] 2026-03-12 09:15:09,417 | INFO     | cat /etc/os-release:
[2026-03-12 10:19:14] NAME="CentOS Linux"
[2026-03-12 10:19:14] VERSION="7 (Core)"
[2026-03-12 10:19:14] ID="centos"
[2026-03-12 10:19:14] ID_LIKE="rhel fedora"
[2026-03-12 10:19:14] VERSION_ID="7"
[2026-03-12 10:19:14] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-12 10:19:14] ANSI_COLOR="0;31"
[2026-03-12 10:19:14] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-12 10:19:14] HOME_URL="https://www.centos.org/"
[2026-03-12 10:19:14] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-12 10:19:14] 
[2026-03-12 10:19:14] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-12 10:19:14] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-12 10:19:14] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-12 10:19:14] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-12 10:19:14] 
[2026-03-12 10:19:14] 2026-03-12 09:15:09,417 | INFO     | **************************************
[2026-03-12 10:19:14] 2026-03-12 09:15:09,920 | INFO     | executing command: df -mP /var/lib/boinc/var/slot216/slots/0
[2026-03-12 10:19:14] 2026-03-12 09:15:09,932 | INFO     | sufficient remaining disk space (29280436224 B)
[2026-03-12 10:19:14] 2026-03-12 09:15:09,933 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-12 10:19:14] 2026-03-12 09:15:09,933 | INFO     | current server update state: UPDATING_FINAL
[2026-03-12 10:19:14] 2026-03-12 09:15:09,933 | INFO     | update_server=False
[2026-03-12 10:19:14] 2026-03-12 09:15:09,933 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-12 10:19:14] 2026-03-12 09:15:09,933 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-12 10:19:14] 2026-03-12 09:15:10,828 | INFO     | all data control threads have been joined
[2026-03-12 10:19:14] 2026-03-12 09:15:10,938 | INFO     | [job] retrieve thread has finished
[2026-03-12 10:19:14] 2026-03-12 09:15:10,992 | INFO     | [payload] execute_payloads thread has finished
[2026-03-12 10:19:14] 2026-03-12 09:15:11,057 | INFO     | [payload] validate_pre thread has finished
[2026-03-12 10:19:14] 2026-03-12 09:15:11,057 | INFO     | [job] create_data_payload thread has finished
[2026-03-12 10:19:14] 2026-03-12 09:15:11,061 | INFO     | all payload control threads have been joined
[2026-03-12 10:19:14] 2026-03-12 09:15:11,341 | INFO     | all job control threads have been joined
[2026-03-12 10:19:14] 2026-03-12 09:15:11,566 | INFO     | [data] copytool_in thread has finished
[2026-03-12 10:19:14] 2026-03-12 09:15:11,604 | INFO     | [payload] failed_post thread has finished
[2026-03-12 10:19:14] 2026-03-12 09:15:11,706 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-12 10:19:14] 2026-03-12 09:15:11,830 | INFO     | [data] control thread has finished
[2026-03-12 10:19:14] 2026-03-12 09:15:11,869 | INFO     | [payload] validate_post thread has finished
[2026-03-12 10:19:14] 2026-03-12 09:15:11,940 | INFO     | [data] copytool_out thread has finished
[2026-03-12 10:19:14] 2026-03-12 09:15:12,067 | INFO     | [payload] control thread has finished
[2026-03-12 10:19:14] 2026-03-12 09:15:12,231 | WARNING  | process 1647632 can no longer be monitored (due to stat problems) - aborting
[2026-03-12 10:19:14] 2026-03-12 09:15:12,255 | INFO     | [job] validate thread has finished
[2026-03-12 10:19:14] 2026-03-12 09:15:12,352 | INFO     | [job] control thread has finished
[2026-03-12 10:19:14] 2026-03-12 09:15:12,578 | INFO     | using path: /var/lib/boinc/var/slot216/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-03-12 10:19:14] 2026-03-12 09:15:12,605 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-12 10:19:14] 2026-03-12 09:15:12,867 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-12 10:19:14] 2026-03-12 09:15:13,084 | INFO     | number of running child processes to parent process 1647632: 1
[2026-03-12 10:19:14] 2026-03-12 09:15:13,084 | INFO     | maximum number of monitored processes: 6
[2026-03-12 10:19:14] 2026-03-12 09:15:13,084 | INFO     | aborting job monitoring since job object (job id=7049187146) has expired
[2026-03-12 10:19:14] 2026-03-12 09:15:13,084 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-12 10:19:14] 2026-03-12 09:15:13,084 | INFO     | will abort loop
[2026-03-12 10:19:14] 2026-03-12 09:15:13,611 | INFO     | [job] queue monitor thread has finished
[2026-03-12 10:19:14] 2026-03-12 09:15:14,089 | INFO     | [job] job monitor thread has finished
[2026-03-12 10:19:14] 2026-03-12 09:15:16,875 | INFO     | [data] queue_monitor thread has finished
[2026-03-12 10:19:14] 2026-03-12 09:15:39,423 | INFO     | PID=1628151 has CPU usage=8.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-12 10:19:14] 2026-03-12 09:15:39,424 | INFO     | .. there are 45 such processes running
[2026-03-12 10:19:14] 2026-03-12 09:15:39,424 | INFO     | found 0 job(s) in 20 queues
[2026-03-12 10:19:14] 2026-03-12 09:15:39,424 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-12 10:19:14] 2026-03-12 09:15:39,424 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-12 10:19:14] 2026-03-12 09:15:58,142 | INFO     | [monitor] cgroup control has ended
[2026-03-12 10:19:14] 2026-03-12 09:15:59,964 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22472803878720)>', '<ExcThread(monitor, started 22472564156160)>']
[2026-03-12 10:19:14] 2026-03-12 09:16:00,547 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-12 10:19:14] 2026-03-12 09:16:00,547 | INFO     | [monitor] control thread has ended
[2026-03-12 10:19:14] 2026-03-12 09:16:04,990 | INFO     | all workflow threads have been joined
[2026-03-12 10:19:14] 2026-03-12 09:16:04,990 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-12 10:19:14] 2026-03-12 09:16:04,990 | INFO     | traces error code: 0
[2026-03-12 10:19:14] 2026-03-12 09:16:04,990 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-12 10:19:14] 2026-03-12 09:16:05,154 [wrapper] ==== pilot stdout END ====
[2026-03-12 10:19:14] 2026-03-12 09:16:05,158 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-12 10:19:14] 2026-03-12 09:16:05,160 [wrapper] pilotpid: 1628151
[2026-03-12 10:19:14] 2026-03-12 09:16:05,163 [wrapper] Pilot exit status: 0
[2026-03-12 10:19:14] 2026-03-12 09:16:05,173 [wrapper] pandaids: 7049187146
[2026-03-12 10:19:14] 2026-03-12 09:16:05,313 [wrapper] cleanup supervisor_pilot 2272331 1628152
[2026-03-12 10:19:14] 2026-03-12 09:16:05,316 [wrapper] Test setup, not cleaning
[2026-03-12 10:19:14] 2026-03-12 09:16:05,319 [wrapper] apfmon messages muted
[2026-03-12 10:19:14] 2026-03-12 09:16:05,322 [wrapper] ==== wrapper stdout END ====
[2026-03-12 10:19:14] 2026-03-12 09:16:05,324 [wrapper] ==== wrapper stderr END ====
[2026-03-12 10:19:14]  *** Error codes and diagnostics ***
[2026-03-12 10:19:14]     "exeErrorCode": 0,
[2026-03-12 10:19:14]     "exeErrorDiag": "",
[2026-03-12 10:19:14]     "pilotErrorCode": 0,
[2026-03-12 10:19:14]     "pilotErrorDiag": "",
[2026-03-12 10:19:14]  *** Listing of results directory ***
[2026-03-12 10:19:14] total 424152
[2026-03-12 10:19:14] -rw-r--r--. 1 boinc boinc    585013 Mar 10 23:04 pilot3.tar.gz
[2026-03-12 10:19:14] -rwx------. 1 boinc boinc     36322 Mar 10 23:07 runpilot2-wrapper.sh
[2026-03-12 10:19:14] -rw-r--r--. 1 boinc boinc      5111 Mar 10 23:07 queuedata.json
[2026-03-12 10:19:14] -rw-r--r--. 1 boinc boinc       100 Mar 12 08:31 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-12 10:19:14] -rwxr-xr-x. 1 boinc boinc      7986 Mar 12 08:31 run_atlas
[2026-03-12 10:19:14] -rw-r--r--. 1 boinc boinc       105 Mar 12 08:31 job.xml
[2026-03-12 10:19:14] -rw-r--r--. 2 boinc boinc    597521 Mar 12 08:31 input.tar.gz
[2026-03-12 10:19:14] -rw-r--r--. 1 boinc boinc      6708 Mar 12 08:31 init_data.xml
[2026-03-12 10:19:14] -rw-r--r--. 2 boinc boinc 218883111 Mar 12 08:31 EVNT.48967008._000274.pool.root.1
[2026-03-12 10:19:14] -rw-r--r--. 2 boinc boinc     15845 Mar 12 08:31 start_atlas.sh
[2026-03-12 10:19:14] drwxrwx--x. 2 boinc boinc      4096 Mar 12 08:31 shared
[2026-03-12 10:19:14] -rw-r--r--. 1 boinc boinc         0 Mar 12 08:31 boinc_lockfile
[2026-03-12 10:19:14] -rw-r--r--. 1 boinc boinc      2561 Mar 12 08:31 pandaJob.out
[2026-03-12 10:19:14] -rw-------. 1 boinc boinc   1006243 Mar 12 08:31 agis_schedconf.cvmfs.json
[2026-03-12 10:19:14] -rw-------. 1 boinc boinc   1511578 Mar 12 08:31 agis_ddmendpoints.agis.ALL.json
[2026-03-12 10:19:14] -rw-------. 1 boinc boinc       444 Mar 12 08:31 workernode_map.json
[2026-03-12 10:19:14] drwx------. 5 boinc boinc      4096 Mar 12 08:31 pilot3
[2026-03-12 10:19:14] -rw-------. 1 boinc boinc 209147465 Mar 12 10:14 HITS.48967011._006968.pool.root.1
[2026-03-12 10:19:14] -rw-r--r--. 1 boinc boinc       528 Mar 12 10:14 boinc_task_state.xml
[2026-03-12 10:19:14] -rw-------. 1 boinc boinc      1043 Mar 12 10:15 memory_monitor_summary.json
[2026-03-12 10:19:14] -rw-------. 1 boinc boinc    283583 Mar 12 10:15 log.48967011._006968.job.log.tgz.1
[2026-03-12 10:19:14] -rw-------. 1 boinc boinc      6351 Mar 12 10:15 heartbeat.json
[2026-03-12 10:19:14] -rw-------. 1 boinc boinc        95 Mar 12 10:15 pilot_heartbeat.json
[2026-03-12 10:19:14] -rw-------. 1 boinc boinc      5363 Mar 12 10:16 pilotlog.txt
[2026-03-12 10:19:14] -rw-------. 1 boinc boinc    894077 Mar 12 10:16 log.48967011._006968.job.log.1
[2026-03-12 10:19:14] -rw-------. 1 boinc boinc       357 Mar 12 10:16 output.list
[2026-03-12 10:19:14] -rw-r--r--. 1 boinc boinc       620 Mar 12 10:16 runtime_log
[2026-03-12 10:19:14] -rw-------. 1 boinc boinc   1198080 Mar 12 10:16 result.tar.gz
[2026-03-12 10:19:14] -rw-r--r--. 1 boinc boinc      9221 Mar 12 10:16 runtime_log.err
[2026-03-12 10:19:14] -rw-------. 1 boinc boinc       663 Mar 12 10:16 b9KKDmvPKK9n9Rq4apOajLDm4fhM0noT9bVooX4SDmIWeLDm7IY1Lo.diag
[2026-03-12 10:19:14] -rw-r--r--. 1 boinc boinc        26 Mar 12 10:18 wrapper_checkpoint.txt
[2026-03-12 10:19:14] -rw-r--r--. 1 boinc boinc      8192 Mar 12 10:19 boinc_mmap_file
[2026-03-12 10:19:14] -rw-r--r--. 1 boinc boinc     20834 Mar 12 10:19 stderr.txt
[2026-03-12 10:19:14] HITS file was successfully produced:
[2026-03-12 10:19:14] -rw-------. 1 boinc boinc 209147465 Mar 12 10:14 shared/HITS.pool.root.1
[2026-03-12 10:19:14]  *** Contents of shared directory: ***
[2026-03-12 10:19:14] total 419784
[2026-03-12 10:19:14] -rw-r--r--. 2 boinc boinc    597521 Mar 12 08:31 input.tar.gz
[2026-03-12 10:19:14] -rw-r--r--. 2 boinc boinc 218883111 Mar 12 08:31 ATLAS.root_0
[2026-03-12 10:19:14] -rw-r--r--. 2 boinc boinc     15845 Mar 12 08:31 start_atlas.sh
[2026-03-12 10:19:14] -rw-------. 1 boinc boinc 209147465 Mar 12 10:14 HITS.pool.root.1
[2026-03-12 10:19:14] -rw-------. 1 boinc boinc   1198080 Mar 12 10:16 result.tar.gz
10:19:15 (1616386): run_atlas exited; CPU time 24011.219785
10:19:15 (1616386): called boinc_finish(0)

</stderr_txt>
]]>

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