Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
14:59:22 (3165678): wrapper (7.7.26015): starting
14:59:22 (3165678): wrapper: running run_atlas (--nthreads 4)
[2026-03-13 14:59:22] Arguments: --nthreads 4
[2026-03-13 14:59:22] Threads: 4
[2026-03-13 14:59:22] Checking for CVMFS
[2026-03-13 14:59:22] No cvmfs_config command found, will try listing directly
[2026-03-13 14:59:22] CVMFS is ok
[2026-03-13 14:59:22] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-13 14:59:22] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-13 14:59:22] Further information can be found at the LHC@home message board.
[2026-03-13 14:59:22] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-13 14:59:22] Checking for apptainer binary...
[2026-03-13 14:59:22] which: no apptainer in ((null))
[2026-03-13 14:59:22] apptainer is not installed, using version from CVMFS
[2026-03-13 14:59:22] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-13 14:59:23] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot44/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut15.grid.cesnet.cz
[2026-03-13 14:59:23] apptainer works
[2026-03-13 14:59:23] Set ATHENA_PROC_NUMBER=4
[2026-03-13 14:59:23] Set ATHENA_CORE_NUMBER=4
[2026-03-13 14:59:23] Starting ATLAS job with PandaID=7049147147
[2026-03-13 14:59:23] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot44/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-13 18:54:11]  *** The last 200 lines of the pilot log: ***
[2026-03-13 18:54:11] 2026-03-13 17:52:10,440 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-13 18:54:11] 2026-03-13 17:52:10,440 | INFO     | log transfer has been attempted: DONE
[2026-03-13 18:54:11] 2026-03-13 17:52:10,441 | INFO     | job 7049147147 has finished - writing final server update
[2026-03-13 18:54:11] 2026-03-13 17:52:10,441 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_967298/.job.ad'
[2026-03-13 18:54:11] 2026-03-13 17:52:10,441 | INFO     | total number of processed events: 400 (read)
[2026-03-13 18:54:11] 2026-03-13 17:52:10,469 | INFO     | using path: /var/lib/boinc/var/slot44/slots/0/PanDA_Pilot-7049147147/memory_monitor_summary.json (trf name=prmon)
[2026-03-13 18:54:11] 2026-03-13 17:52:10,470 | INFO     | extracted standard info from prmon json
[2026-03-13 18:54:11] 2026-03-13 17:52:10,470 | INFO     | extracted standard memory fields from prmon json
[2026-03-13 18:54:11] 2026-03-13 17:52:10,470 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-13 18:54:11] 2026-03-13 17:52:10,471 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-13 18:54:11] 2026-03-13 17:52:10,471 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-13 18:54:11] 2026-03-13 17:52:10,475 | INFO     | fitting pss+swap vs Time
[2026-03-13 18:54:11] 2026-03-13 17:52:10,475 | INFO     | sum of square deviations: 3627000098.0
[2026-03-13 18:54:11] 2026-03-13 17:52:10,477 | INFO     | sum of deviations: 37779574018.99999
[2026-03-13 18:54:11] 2026-03-13 17:52:10,477 | INFO     | mean x: 1773417379.0
[2026-03-13 18:54:11] 2026-03-13 17:52:10,477 | INFO     | mean y: 2303161.079295154
[2026-03-13 18:54:11] 2026-03-13 17:52:10,477 | INFO     | intersect: -18469974568.78788
[2026-03-13 18:54:11] 2026-03-13 17:52:10,477 | INFO     | chi2: 1.4040258099469602
[2026-03-13 18:54:11] 2026-03-13 17:52:10,478 | INFO     | sum of square deviations: 3392567795.5
[2026-03-13 18:54:11] 2026-03-13 17:52:10,479 | INFO     | sum of deviations: 36807311245.00001
[2026-03-13 18:54:11] 2026-03-13 17:52:10,479 | INFO     | mean x: 1773417226.5
[2026-03-13 18:54:11] 2026-03-13 17:52:10,480 | INFO     | mean y: 2302528.5135135134
[2026-03-13 18:54:11] 2026-03-13 17:52:10,480 | INFO     | intersect: -19238203117.272682
[2026-03-13 18:54:11] 2026-03-13 17:52:10,480 | INFO     | chi2: 1.4044236246821313
[2026-03-13 18:54:11] 2026-03-13 17:52:10,480 | INFO     | current chi2=1.4044236246821313 (change=-0.028333861981220645 %)
[2026-03-13 18:54:11] 2026-03-13 17:52:10,480 | INFO     | right removable region: 221
[2026-03-13 18:54:11] 2026-03-13 17:52:10,481 | INFO     | sum of square deviations: 3392567795.5
[2026-03-13 18:54:11] 2026-03-13 17:52:10,482 | INFO     | sum of deviations: 6256500807.0
[2026-03-13 18:54:11] 2026-03-13 17:52:10,482 | INFO     | mean x: 1773417531.5
[2026-03-13 18:54:11] 2026-03-13 17:52:10,482 | INFO     | mean y: 2323457.936936937
[2026-03-13 18:54:11] 2026-03-13 17:52:10,482 | INFO     | intersect: -3268175139.5251217
[2026-03-13 18:54:11] 2026-03-13 17:52:10,483 | INFO     | chi2: 0.0007978903538769094
[2026-03-13 18:54:11] 2026-03-13 17:52:10,483 | INFO     | current chi2=0.0007978903538769094 (change=99.94317124740697 %)
[2026-03-13 18:54:11] 2026-03-13 17:52:10,483 | INFO     | sum of square deviations: 3168461268.0
[2026-03-13 18:54:11] 2026-03-13 17:52:10,485 | INFO     | sum of deviations: 5765907392.000001
[2026-03-13 18:54:11] 2026-03-13 17:52:10,485 | INFO     | mean x: 1773417684.0
[2026-03-13 18:54:11] 2026-03-13 17:52:10,485 | INFO     | mean y: 2323789.8986175116
[2026-03-13 18:54:11] 2026-03-13 17:52:10,485 | INFO     | intersect: -3224909011.2564955
[2026-03-13 18:54:11] 2026-03-13 17:52:10,485 | INFO     | chi2: 0.0007400937096488551
[2026-03-13 18:54:11] 2026-03-13 17:52:10,485 | INFO     | current chi2=0.0007400937096488551 (change=7.243682536983094 %)
[2026-03-13 18:54:11] 2026-03-13 17:52:10,486 | INFO     | left removable region: 20
[2026-03-13 18:54:11] 2026-03-13 17:52:10,486 | INFO     | sum of square deviations: 2518000700.0
[2026-03-13 18:54:11] 2026-03-13 17:52:10,487 | INFO     | sum of deviations: 4409976577.999999
[2026-03-13 18:54:11] 2026-03-13 17:52:10,487 | INFO     | mean x: 1773417806.0
[2026-03-13 18:54:11] 2026-03-13 17:52:10,488 | INFO     | mean y: 2324405.223880597
[2026-03-13 18:54:11] 2026-03-13 17:52:10,488 | INFO     | intersect: -3103604432.4718933
[2026-03-13 18:54:11] 2026-03-13 17:52:10,488 | INFO     | chi2: 0.0004385261225356835
[2026-03-13 18:54:11] 2026-03-13 17:52:10,488 | INFO     | current memory leak: 1.75 B/s (using 201 data points, chi2=0.00)
[2026-03-13 18:54:11] 2026-03-13 17:52:10,488 | INFO     | could have reported an average CPU frequency of 2771 MHz (11 samples)
[2026-03-13 18:54:11] 2026-03-13 17:52:10,489 | INFO     | ..............................
[2026-03-13 18:54:11] 2026-03-13 17:52:10,489 | INFO     | . Timing measurements:
[2026-03-13 18:54:11] 2026-03-13 17:52:10,489 | INFO     | . get job = 0 s
[2026-03-13 18:54:11] 2026-03-13 17:52:10,489 | INFO     | . initial setup = 21 s
[2026-03-13 18:54:11] 2026-03-13 17:52:10,489 | INFO     | . payload setup = 23 s
[2026-03-13 18:54:11] 2026-03-13 17:52:10,489 | INFO     | . stage-in = 0 s
[2026-03-13 18:54:11] 2026-03-13 17:52:10,489 | INFO     | . payload execution = 13862 s
[2026-03-13 18:54:11] 2026-03-13 17:52:10,489 | INFO     | . stage-out = 1 s
[2026-03-13 18:54:11] 2026-03-13 17:52:10,489 | INFO     | . log creation = 0 s
[2026-03-13 18:54:11] 2026-03-13 17:52:10,489 | INFO     | ..............................
[2026-03-13 18:54:11] 2026-03-13 17:52:10,636 | INFO     | 
[2026-03-13 18:54:11] 2026-03-13 17:52:10,636 | INFO     | job summary report
[2026-03-13 18:54:11] 2026-03-13 17:52:10,636 | INFO     | --------------------------------------------------
[2026-03-13 18:54:11] 2026-03-13 17:52:10,636 | INFO     | PanDA job id: 7049147147
[2026-03-13 18:54:11] 2026-03-13 17:52:10,636 | INFO     | task id: 48967030
[2026-03-13 18:54:11] 2026-03-13 17:52:10,636 | INFO     | errors: (none)
[2026-03-13 18:54:11] 2026-03-13 17:52:10,636 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-13 18:54:11] 2026-03-13 17:52:10,637 | INFO     | pilot state: finished 
[2026-03-13 18:54:11] 2026-03-13 17:52:10,637 | INFO     | transexitcode: 0
[2026-03-13 18:54:11] 2026-03-13 17:52:10,637 | INFO     | exeerrorcode: 0
[2026-03-13 18:54:11] 2026-03-13 17:52:10,637 | INFO     | exeerrordiag: 
[2026-03-13 18:54:11] 2026-03-13 17:52:10,637 | INFO     | exitcode: 0
[2026-03-13 18:54:11] 2026-03-13 17:52:10,637 | INFO     | exitmsg: OK
[2026-03-13 18:54:11] 2026-03-13 17:52:10,637 | INFO     | cpuconsumptiontime: 46590 s
[2026-03-13 18:54:11] 2026-03-13 17:52:10,637 | INFO     | nevents: 400
[2026-03-13 18:54:11] 2026-03-13 17:52:10,637 | INFO     | neventsw: 0
[2026-03-13 18:54:11] 2026-03-13 17:52:10,637 | INFO     | pid: 3192196
[2026-03-13 18:54:11] 2026-03-13 17:52:10,637 | INFO     | pgrp: 3192196
[2026-03-13 18:54:11] 2026-03-13 17:52:10,637 | INFO     | corecount: 4
[2026-03-13 18:54:11] 2026-03-13 17:52:10,638 | INFO     | event service: False
[2026-03-13 18:54:11] 2026-03-13 17:52:10,638 | INFO     | sizes: {0: 2279820, 1: 2280281, 11: 2280281, 13890: 2311239, 13891: 2320259, 13894: 2320315, 13895: 2320637}
[2026-03-13 18:54:11] 2026-03-13 17:52:10,638 | INFO     | --------------------------------------------------
[2026-03-13 18:54:11] 2026-03-13 17:52:10,638 | INFO     | 
[2026-03-13 18:54:11] 2026-03-13 17:52:10,638 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot44/slots/0
[2026-03-13 18:54:11] 2026-03-13 17:52:10,670 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-13 18:54:11] 2026-03-13 17:52:10,671 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-13 18:54:11] 2026-03-13 17:52:10,671 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-13 18:54:11] 2026-03-13 17:52:10,671 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-13 18:54:11] 2026-03-13 17:52:10,671 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-13 18:54:11] 2026-03-13 17:52:10,671 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-13 18:54:11] 2026-03-13 17:52:10,671 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-13 18:54:11] 2026-03-13 17:52:10,671 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-13 18:54:11] 2026-03-13 17:52:10,671 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-13 18:54:11] 2026-03-13 17:52:10,671 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-13 18:54:11] 2026-03-13 17:52:10,672 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-13 18:54:11] 2026-03-13 17:52:10,672 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-13 18:54:11] 2026-03-13 17:52:10,672 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-13 18:54:11] 2026-03-13 17:52:10,672 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-13 18:54:11] 2026-03-13 17:52:10,672 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-13 18:54:11] 2026-03-13 17:52:10,672 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-13 18:54:11] 2026-03-13 17:52:10,672 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-13 18:54:11] 2026-03-13 17:52:10,672 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-13 18:54:11] 2026-03-13 17:52:10,672 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-13 18:54:11] 2026-03-13 17:52:10,672 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-13 18:54:11] 2026-03-13 17:52:10,673 | INFO     | job 7049147147 has completed (purged errors)
[2026-03-13 18:54:11] 2026-03-13 17:52:10,673 | INFO     | overall cleanup function is called
[2026-03-13 18:54:11] 2026-03-13 17:52:11,578 | WARNING  | process 3192196 can no longer be monitored (due to stat problems) - aborting
[2026-03-13 18:54:11] 2026-03-13 17:52:11,681 | INFO     | --- collectZombieJob: --- 10, [3192196]
[2026-03-13 18:54:11] 2026-03-13 17:52:11,681 | INFO     | zombie collector waiting for pid 3192196
[2026-03-13 18:54:11] 2026-03-13 17:52:11,681 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-13 18:54:11] 2026-03-13 17:52:11,681 | INFO     | collected zombie processes
[2026-03-13 18:54:11] 2026-03-13 17:52:11,681 | INFO     | will attempt to kill all subprocesses of pid=3192196
[2026-03-13 18:54:11] 2026-03-13 17:52:12,660 | INFO     | using path: /var/lib/boinc/var/slot44/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-03-13 18:54:11] 2026-03-13 17:52:13,954 | INFO     | process IDs to be killed: [3192196] (in reverse order)
[2026-03-13 18:54:11] 2026-03-13 17:52:14,221 | INFO     | number of running child processes to parent process 3192196: 1
[2026-03-13 18:54:11] 2026-03-13 17:52:14,221 | INFO     | maximum number of monitored processes: 6
[2026-03-13 18:54:11] 2026-03-13 17:52:14,221 | INFO     | aborting job monitoring since job object (job id=7049147147) has expired
[2026-03-13 18:54:11] 2026-03-13 17:52:14,399 | WARNING  | found no corresponding commands to process id(s)
[2026-03-13 18:54:11] 2026-03-13 17:52:14,399 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-13 18:54:11] 2026-03-13 17:52:14,436 | INFO     | did not find any defunct processes belonging to 3192196
[2026-03-13 18:54:11] 2026-03-13 17:52:14,472 | INFO     | did not find any defunct processes belonging to 3192196
[2026-03-13 18:54:11] 2026-03-13 17:52:14,472 | INFO     | ready for new job
[2026-03-13 18:54:11] 2026-03-13 17:52:14,472 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-13 18:54:11] 2026-03-13 17:52:14,476 | INFO     | **************************************
[2026-03-13 18:54:11] 2026-03-13 17:52:14,476 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-13 18:54:11] 2026-03-13 17:52:14,476 | INFO     | **************************************
[2026-03-13 18:54:11] 2026-03-13 17:52:14,476 | INFO     | 
[2026-03-13 18:54:11] 2026-03-13 17:52:14,485 | INFO     | architecture information:
[2026-03-13 18:54:11] 2026-03-13 17:52:14,489 | INFO     | executing command: cat /etc/os-release
[2026-03-13 18:54:11] 2026-03-13 17:52:14,517 | INFO     | cat /etc/os-release:
[2026-03-13 18:54:11] NAME="CentOS Linux"
[2026-03-13 18:54:11] VERSION="7 (Core)"
[2026-03-13 18:54:11] ID="centos"
[2026-03-13 18:54:11] ID_LIKE="rhel fedora"
[2026-03-13 18:54:11] VERSION_ID="7"
[2026-03-13 18:54:11] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-13 18:54:11] ANSI_COLOR="0;31"
[2026-03-13 18:54:11] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-13 18:54:11] HOME_URL="https://www.centos.org/"
[2026-03-13 18:54:11] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-13 18:54:11] 
[2026-03-13 18:54:11] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-13 18:54:11] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-13 18:54:11] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-13 18:54:11] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-13 18:54:11] 
[2026-03-13 18:54:11] 2026-03-13 17:52:14,518 | INFO     | **************************************
[2026-03-13 18:54:11] 2026-03-13 17:52:15,021 | INFO     | executing command: df -mP /var/lib/boinc/var/slot44/slots/0
[2026-03-13 18:54:11] 2026-03-13 17:52:15,046 | INFO     | sufficient remaining disk space (93970235392 B)
[2026-03-13 18:54:11] 2026-03-13 17:52:15,047 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-13 18:54:11] 2026-03-13 17:52:15,047 | INFO     | current server update state: UPDATING_FINAL
[2026-03-13 18:54:11] 2026-03-13 17:52:15,047 | INFO     | update_server=False
[2026-03-13 18:54:11] 2026-03-13 17:52:15,047 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-13 18:54:11] 2026-03-13 17:52:15,047 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-13 18:54:11] 2026-03-13 17:52:15,047 | INFO     | will abort loop
[2026-03-13 18:54:11] 2026-03-13 17:52:15,142 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-13 18:54:11] 2026-03-13 17:52:15,456 | INFO     | all data control threads have been joined
[2026-03-13 18:54:11] 2026-03-13 17:52:15,602 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-13 18:54:11] 2026-03-13 17:52:15,937 | INFO     | all payload control threads have been joined
[2026-03-13 18:54:11] 2026-03-13 17:52:16,052 | INFO     | [job] job monitor thread has finished
[2026-03-13 18:54:11] 2026-03-13 17:52:16,052 | INFO     | [job] retrieve thread has finished
[2026-03-13 18:54:11] 2026-03-13 17:52:16,102 | INFO     | [job] create_data_payload thread has finished
[2026-03-13 18:54:11] 2026-03-13 17:52:16,128 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-13 18:54:11] 2026-03-13 17:52:16,437 | INFO     | all job control threads have been joined
[2026-03-13 18:54:11] 2026-03-13 17:52:16,461 | INFO     | [data] control thread has finished
[2026-03-13 18:54:11] 2026-03-13 17:52:16,556 | INFO     | [payload] validate_post thread has finished
[2026-03-13 18:54:11] 2026-03-13 17:52:16,607 | INFO     | [job] queue monitor thread has finished
[2026-03-13 18:54:11] 2026-03-13 17:52:16,942 | INFO     | [payload] control thread has finished
[2026-03-13 18:54:11] 2026-03-13 17:52:17,149 | INFO     | [data] copytool_out thread has finished
[2026-03-13 18:54:11] 2026-03-13 17:52:17,290 | INFO     | [payload] execute_payloads thread has finished
[2026-03-13 18:54:11] 2026-03-13 17:52:17,293 | INFO     | [job] validate thread has finished
[2026-03-13 18:54:11] 2026-03-13 17:52:17,307 | INFO     | [data] copytool_in thread has finished
[2026-03-13 18:54:11] 2026-03-13 17:52:17,318 | INFO     | [payload] failed_post thread has finished
[2026-03-13 18:54:11] 2026-03-13 17:52:17,442 | INFO     | [job] control thread has finished
[2026-03-13 18:54:11] 2026-03-13 17:52:17,535 | INFO     | [payload] validate_pre thread has finished
[2026-03-13 18:54:11] 2026-03-13 17:52:20,134 | INFO     | [data] queue_monitor thread has finished
[2026-03-13 18:54:11] 2026-03-13 17:52:25,495 | INFO     | job.realtimelogging is not enabled
[2026-03-13 18:54:11] 2026-03-13 17:52:26,502 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-13 18:54:11] 2026-03-13 17:52:43,330 | INFO     | PID=3175810 has CPU usage=14.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-03-13 18:54:11] 2026-03-13 17:52:43,330 | INFO     | .. there are 22 such processes running
[2026-03-13 18:54:11] 2026-03-13 17:52:43,330 | INFO     | found 0 job(s) in 20 queues
[2026-03-13 18:54:11] 2026-03-13 17:52:43,331 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-13 18:54:11] 2026-03-13 17:52:43,331 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-13 18:54:11] 2026-03-13 17:52:47,998 | INFO     | [monitor] cgroup control has ended
[2026-03-13 18:54:11] 2026-03-13 17:52:48,903 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23444071982912)>', '<ExcThread(monitor, started 23443820234496)>']
[2026-03-13 18:54:11] 2026-03-13 17:52:49,361 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-13 18:54:11] 2026-03-13 17:52:49,361 | INFO     | [monitor] control thread has ended
[2026-03-13 18:54:11] 2026-03-13 17:52:53,928 | INFO     | all workflow threads have been joined
[2026-03-13 18:54:11] 2026-03-13 17:52:53,930 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-13 18:54:11] 2026-03-13 17:52:53,931 | INFO     | traces error code: 0
[2026-03-13 18:54:11] 2026-03-13 17:52:53,931 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-13 18:54:11] 2026-03-13 17:52:54,147 [wrapper] ==== pilot stdout END ====
[2026-03-13 18:54:11] 2026-03-13 17:52:54,152 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-13 18:54:11] 2026-03-13 17:52:54,156 [wrapper] pilotpid: 3175810
[2026-03-13 18:54:11] 2026-03-13 17:52:54,159 [wrapper] Pilot exit status: 0
[2026-03-13 18:54:11] 2026-03-13 17:52:54,203 [wrapper] pandaids: 7049147147
[2026-03-13 18:54:11] 2026-03-13 17:52:54,416 [wrapper] cleanup supervisor_pilot 3685449 3175811
[2026-03-13 18:54:11] 2026-03-13 17:52:54,420 [wrapper] Test setup, not cleaning
[2026-03-13 18:54:11] 2026-03-13 17:52:54,424 [wrapper] apfmon messages muted
[2026-03-13 18:54:11] 2026-03-13 17:52:54,427 [wrapper] ==== wrapper stdout END ====
[2026-03-13 18:54:11] 2026-03-13 17:52:54,430 [wrapper] ==== wrapper stderr END ====
[2026-03-13 18:54:11]  *** Error codes and diagnostics ***
[2026-03-13 18:54:11]     "exeErrorCode": 0,
[2026-03-13 18:54:11]     "exeErrorDiag": "",
[2026-03-13 18:54:11]     "pilotErrorCode": 0,
[2026-03-13 18:54:11]     "pilotErrorDiag": "",
[2026-03-13 18:54:11]  *** Listing of results directory ***
[2026-03-13 18:54:11] total 417948
[2026-03-13 18:54:11] -rw-r--r--. 1 boinc boinc      5111 Mar 10 17:46 queuedata.json
[2026-03-13 18:54:11] -rw-r--r--. 1 boinc boinc    584627 Mar 10 17:46 pilot3.tar.gz
[2026-03-13 18:54:11] -rwx------. 1 boinc boinc     36322 Mar 10 17:47 runpilot2-wrapper.sh
[2026-03-13 18:54:11] -rw-r--r--. 1 boinc boinc       100 Mar 13 14:59 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-13 18:54:11] -rwxr-xr-x. 1 boinc boinc      7986 Mar 13 14:59 run_atlas
[2026-03-13 18:54:11] -rw-r--r--. 1 boinc boinc       105 Mar 13 14:59 job.xml
[2026-03-13 18:54:11] -rw-r--r--. 2 boinc boinc 215493221 Mar 13 14:59 EVNT.48967027._000130.pool.root.1
[2026-03-13 18:54:11] -rw-r--r--. 1 boinc boinc      6619 Mar 13 14:59 init_data.xml
[2026-03-13 18:54:11] -rw-r--r--. 2 boinc boinc     15845 Mar 13 14:59 start_atlas.sh
[2026-03-13 18:54:11] drwxrwx--x. 2 boinc boinc      4096 Mar 13 14:59 shared
[2026-03-13 18:54:11] -rw-r--r--. 2 boinc boinc    597945 Mar 13 14:59 input.tar.gz
[2026-03-13 18:54:11] -rw-r--r--. 1 boinc boinc         0 Mar 13 14:59 boinc_lockfile
[2026-03-13 18:54:11] -rw-r--r--. 1 boinc boinc      2565 Mar 13 14:59 pandaJob.out
[2026-03-13 18:54:11] -rw-------. 1 boinc boinc   1006481 Mar 13 15:00 agis_schedconf.cvmfs.json
[2026-03-13 18:54:11] -rw-------. 1 boinc boinc       442 Mar 13 15:00 workernode_map.json
[2026-03-13 18:54:11] drwx------. 5 boinc boinc      4096 Mar 13 15:00 pilot3
[2026-03-13 18:54:11] -rw-r--r--. 1 boinc boinc       528 Mar 13 18:51 boinc_task_state.xml
[2026-03-13 18:54:11] -rw-------. 1 boinc boinc 204046365 Mar 13 18:51 HITS.48967030._003258.pool.root.1
[2026-03-13 18:54:11] -rw-------. 1 boinc boinc        95 Mar 13 18:51 pilot_heartbeat.json
[2026-03-13 18:54:11] -rw-------. 1 boinc boinc      1031 Mar 13 18:52 memory_monitor_summary.json
[2026-03-13 18:54:11] -rw-------. 1 boinc boinc   1511579 Mar 13 18:52 agis_ddmendpoints.agis.ALL.json
[2026-03-13 18:54:11] -rw-------. 1 boinc boinc    393988 Mar 13 18:52 log.48967030._003258.job.log.tgz.1
[2026-03-13 18:54:11] -rw-------. 1 boinc boinc      6351 Mar 13 18:52 heartbeat.json
[2026-03-13 18:54:11] -rw-------. 1 boinc boinc      4904 Mar 13 18:52 pilotlog.txt
[2026-03-13 18:54:11] -rw-------. 1 boinc boinc   1856390 Mar 13 18:52 log.48967030._003258.job.log.1
[2026-03-13 18:54:11] -rw-------. 1 boinc boinc       357 Mar 13 18:52 output.list
[2026-03-13 18:54:11] -rw-r--r--. 1 boinc boinc       620 Mar 13 18:52 runtime_log
[2026-03-13 18:54:11] -rw-------. 1 boinc boinc   2263040 Mar 13 18:52 result.tar.gz
[2026-03-13 18:54:11] -rw-r--r--. 1 boinc boinc      9205 Mar 13 18:52 runtime_log.err
[2026-03-13 18:54:11] -rw-------. 1 boinc boinc       666 Mar 13 18:52 Lr7MDmdPFK9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDm3XgLDmFPgu7m.diag
[2026-03-13 18:54:11] -rw-r--r--. 1 boinc boinc        26 Mar 13 18:53 wrapper_checkpoint.txt
[2026-03-13 18:54:11] -rw-r--r--. 1 boinc boinc      8192 Mar 13 18:54 boinc_mmap_file
[2026-03-13 18:54:11] -rw-r--r--. 1 boinc boinc     21137 Mar 13 18:54 stderr.txt
[2026-03-13 18:54:11] HITS file was successfully produced:
[2026-03-13 18:54:11] -rw-------. 1 boinc boinc 204046365 Mar 13 18:51 shared/HITS.pool.root.1
[2026-03-13 18:54:11]  *** Contents of shared directory: ***
[2026-03-13 18:54:11] total 412532
[2026-03-13 18:54:11] -rw-r--r--. 2 boinc boinc 215493221 Mar 13 14:59 ATLAS.root_0
[2026-03-13 18:54:11] -rw-r--r--. 2 boinc boinc     15845 Mar 13 14:59 start_atlas.sh
[2026-03-13 18:54:11] -rw-r--r--. 2 boinc boinc    597945 Mar 13 14:59 input.tar.gz
[2026-03-13 18:54:11] -rw-------. 1 boinc boinc 204046365 Mar 13 18:51 HITS.pool.root.1
[2026-03-13 18:54:11] -rw-------. 1 boinc boinc   2263040 Mar 13 18:52 result.tar.gz
18:54:13 (3165678): run_atlas exited; CPU time 47435.619486
18:54:13 (3165678): called boinc_finish(0)

</stderr_txt>
]]>

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