Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
16:45:22 (546070): wrapper (7.7.26015): starting
16:45:22 (546070): wrapper: running run_atlas (--nthreads 12)
[2026-03-10 16:45:22] Arguments: --nthreads 12
[2026-03-10 16:45:22] Threads: 12
[2026-03-10 16:45:22] Checking for CVMFS
[2026-03-10 16:45:23] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-10 16:45:23] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-10 16:45:23] Running cvmfs_config stat atlas.cern.ch
[2026-03-10 16:45:24] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-10 16:45:24] 2.11.5.0 3810059 143613 241932 157135 1 412 33214847 45568000 27257 130560 0 915240149 99.812 532275830 18449 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.163:3129 1
[2026-03-10 16:45:24] CVMFS is ok
[2026-03-10 16:45:24] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-10 16:45:24] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-10 16:45:24] Further information can be found at the LHC@home message board.
[2026-03-10 16:45:24] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-10 16:45:24] Checking for apptainer binary...
[2026-03-10 16:45:24] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-10 16:45:24] Running /usr/bin/apptainer --version
[2026-03-10 16:45:25] apptainer version 1.4.1-1.el9
[2026-03-10 16:45:25] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-10 16:45:26] wns0043.triumf.lcg
[2026-03-10 16:45:26] apptainer works
[2026-03-10 16:45:26] Set ATHENA_PROC_NUMBER=12
[2026-03-10 16:45:26] Set ATHENA_CORE_NUMBER=12
[2026-03-10 16:45:26] Starting ATLAS job with PandaID=7049176441
[2026-03-10 16:45:26] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-10 16:51:52]  *** The last 200 lines of the pilot log: ***
[2026-03-10 16:51:52] 2026-03-10 23:50:46,060 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-10 16:51:52] 2026-03-10 23:50:46,060 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-10 16:51:52] 2026-03-10 23:50:46,060 | WARNING  | wrong length of table data, x=[1773186467.0], y=[2850.0] (must be same and length>=4)
[2026-03-10 16:51:52] 2026-03-10 23:50:46,061 | INFO     | could have reported an average CPU frequency of 1507 MHz (4 samples)
[2026-03-10 16:51:52] 2026-03-10 23:50:46,061 | INFO     | ..............................
[2026-03-10 16:51:52] 2026-03-10 23:50:46,061 | INFO     | . Timing measurements:
[2026-03-10 16:51:52] 2026-03-10 23:50:46,061 | INFO     | . get job = 1 s
[2026-03-10 16:51:52] 2026-03-10 23:50:46,061 | INFO     | . initial setup = 36 s
[2026-03-10 16:51:52] 2026-03-10 23:50:46,061 | INFO     | . payload setup = 32 s
[2026-03-10 16:51:52] 2026-03-10 23:50:46,061 | INFO     | . stage-in = 0 s
[2026-03-10 16:51:52] 2026-03-10 23:50:46,061 | INFO     | . payload execution = 78 s
[2026-03-10 16:51:52] 2026-03-10 23:50:46,061 | INFO     | . stage-out = 0 s
[2026-03-10 16:51:52] 2026-03-10 23:50:46,062 | INFO     | . log creation = 0 s
[2026-03-10 16:51:52] 2026-03-10 23:50:46,062 | INFO     | ..............................
[2026-03-10 16:51:52] 2026-03-10 23:50:46,072 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2026-03-10 16:51:52] 2026-03-10 23:50:46,072 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-7049176441/pilotlog.txt
[2026-03-10 16:51:52] 2026-03-10 23:50:46,102 | INFO     | time since job start (241s) is within the limit (345600.0s)
[2026-03-10 16:51:52] 2026-03-10 23:50:46,154 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2026-03-10 16:51:52] - Log from pilotlog.txt -
[2026-03-10 16:51:52] 2026-03-10 23:50:46,059 | INFO     | extracted standard info from prmon json
[2026-03-10 16:51:52] 2026-03-10 23:50:46,059 | INFO     | extracted standard memory fields from prmon json
[2026-03-10 16:51:52] 2026-03-10 23:50:46,059 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-10 16:51:52] 2026-03-10 23:50:46,060 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-10 16:51:52] 2026-03-10 23:50:46,060 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-10 16:51:52] 2026-03-10 23:50:46,060 | WARNING  | wrong length of table data, x=[1773186467.0], y=[2850.0] (must be same and length>=4)
[2026-03-10 16:51:52] 2026-03-10 23:50:46,061 | INFO     | could have reported an average CPU frequency of 1507 MHz (4 samples)
[2026-03-10 16:51:52] 2026-03-10 23:50:46,061 | INFO     | ..............................
[2026-03-10 16:51:52] 2026-03-10 23:50:46,061 | INFO     | . Timing measurements:
[2026-03-10 16:51:52] 2026-03-10 23:50:46,061 | INFO     | . get job = 1 s
[2026-03-10 16:51:52] 2026-03-10 23:50:46,061 | INFO     | . initial setup = 36 s
[2026-03-10 16:51:52] 2026-03-10 23:50:46,061 | INFO     | . payload setup = 32 s
[2026-03-10 16:51:52] 2026-03-10 23:50:46,061 | INFO     | . stage-in = 0 s
[2026-03-10 16:51:52] 2026-03-10 23:50:46,061 | INFO     | . payload execution = 78 s
[2026-03-10 16:51:52] 2026-03-10 23:50:46,061 | INFO     | . stage-out = 0 s
[2026-03-10 16:51:52] 2026-03-10 23:50:46,062 | INFO     | . log creation = 0 s
[2026-03-10 16:51:52] 2026-03-10 23:50:46,062 | INFO     | ..............................
[2026-03-10 16:51:52] 2026-03-10 23:50:46,072 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2026-03-10 16:51:52] 2026-03-10 23:50:46,072 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-7049176441/pilotlog.txt
[2026-03-10 16:51:52] 2026-03-10 23:50:46,102 | INFO     | time since job start (241s) is within the limit (345600.0s)
[2026-03-10 16:51:52] 2026-03-10 23:50:46,155 | WARNING  | 
[2026-03-10 16:51:52] [begin log extracts]
[2026-03-10 16:51:52] - Log from pilotlog.txt -
[2026-03-10 16:51:52] 2026-03-10 23:50:46,059 | INFO     | extracted standard info from prmon json
[2026-03-10 16:51:52] 2026-03-10 23:50:46,059 | INFO     | extracted standard memory fields from prmon json
[2026-03-10 16:51:52] 2026-03-10 23:50:46,059 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-10 16:51:52] 2026-03-10 23:50:46,060 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-10 16:51:52] 2026-03-10 23:50:46,060 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-10 16:51:52] 2026-03-10 23:50:46,060 | WARNING  | wrong length of table data, x=[1773186467.0], y=[2850.0] (must be same and length>=4)
[2026-03-10 16:51:52] 2026-03-10 23:50:46,061 | INFO     | could have reported an average CPU frequency of 1507 MHz (4 samples)
[2026-03-10 16:51:52] 2026-03-10 23:50:46,061 | INFO     | ..............................
[2026-03-10 16:51:52] 2026-03-10 23:50:46,061 | INFO     | . Timing measurements:
[2026-03-10 16:51:52] 2026-03-10 23:50:46,061 | INFO     | . get job = 1 s
[2026-03-10 16:51:52] 2026-03-10 23:50:46,061 | INFO     | . initial setup = 36 s
[2026-03-10 16:51:52] 2026-03-10 23:50:46,061 | INFO     | . payload setup = 32 s
[2026-03-10 16:51:52] 2026-03-10 23:50:46,061 | INFO     | . stage-in = 0 s
[2026-03-10 16:51:52] 2026-03-10 23:50:46,061 | INFO     | . payload execution = 78 s
[2026-03-10 16:51:52] 2026-03-10 23:50:46,061 | INFO     | . stage-out = 0 s
[2026-03-10 16:51:52] 2026-03-10 23:50:46,062 | INFO     | . log creation = 0 s
[2026-03-10 16:51:52] 2026-03-10 23:50:46,062 | INFO     | ..............................
[2026-03-10 16:51:52] 2026-03-10 23:50:46,072 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2026-03-10 16:51:52] 2026-03-10 23:50:46,072 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-7049176441/pilotlog.txt
[2026-03-10 16:51:52] 2026-03-10 23:50:46,102 | INFO     | time since job start (241s) is within the limit (345600.0s)
[2026-03-10 16:51:52] [end log extracts]
[2026-03-10 16:51:52] 2026-03-10 23:50:46,155 | WARNING  | pilotErrorCodes = [1305] (will report primary/first error code)
[2026-03-10 16:51:52] 2026-03-10 23:50:46,174 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2026-03-10 16:51:52] 2026-03-10 23:50:46,677 | INFO     | 
[2026-03-10 16:51:52] 2026-03-10 23:50:46,677 | INFO     | job summary report
[2026-03-10 16:51:52] 2026-03-10 23:50:46,677 | INFO     | --------------------------------------------------
[2026-03-10 16:51:52] 2026-03-10 23:50:46,677 | INFO     | PanDA job id: 7049176441
[2026-03-10 16:51:52] 2026-03-10 23:50:46,677 | INFO     | task id: 48967011
[2026-03-10 16:51:52] 2026-03-10 23:50:46,677 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2026-03-10 16:48:33,748 CRITICAL Transform executor raised TransformValidationExceptio
[2026-03-10 16:51:52] 2026-03-10 23:50:46,678 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-10 16:51:52] 2026-03-10 23:50:46,678 | INFO     | pilot state: failed 
[2026-03-10 16:51:52] 2026-03-10 23:50:46,678 | INFO     | transexitcode: 65
[2026-03-10 16:51:52] 2026-03-10 23:50:46,678 | INFO     | exeerrorcode: 65
[2026-03-10 16:51:52] 2026-03-10 23:50:46,678 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (1)
[2026-03-10 16:51:52] 2026-03-10 23:50:46,678 | INFO     | exitcode: 65
[2026-03-10 16:51:52] 2026-03-10 23:50:46,678 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (1)
[2026-03-10 16:51:52] 2026-03-10 23:50:46,678 | INFO     | cpuconsumptiontime: 22 s
[2026-03-10 16:51:52] 2026-03-10 23:50:46,678 | INFO     | nevents: 0
[2026-03-10 16:51:52] 2026-03-10 23:50:46,678 | INFO     | neventsw: 0
[2026-03-10 16:51:52] 2026-03-10 23:50:46,678 | INFO     | pid: 557843
[2026-03-10 16:51:52] 2026-03-10 23:50:46,678 | INFO     | pgrp: 557843
[2026-03-10 16:51:52] 2026-03-10 23:50:46,679 | INFO     | corecount: 12
[2026-03-10 16:51:52] 2026-03-10 23:50:46,679 | INFO     | event service: False
[2026-03-10 16:51:52] 2026-03-10 23:50:46,679 | INFO     | sizes: {0: 2279146, 1: 2279828, 3: 2280289, 115: 2303520, 116: 2303496, 117: 2307844, 121: 2308000, 237: 2308166}
[2026-03-10 16:51:52] 2026-03-10 23:50:46,679 | INFO     | --------------------------------------------------
[2026-03-10 16:51:52] 2026-03-10 23:50:46,679 | INFO     | 
[2026-03-10 16:51:52] 2026-03-10 23:50:46,679 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2026-03-10 16:51:52] 2026-03-10 23:50:46,738 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-10 16:51:52] 2026-03-10 23:50:46,739 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-10 16:51:52] 2026-03-10 23:50:46,739 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-10 16:51:52] 2026-03-10 23:50:46,739 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-10 16:51:52] 2026-03-10 23:50:46,739 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-10 16:51:52] 2026-03-10 23:50:46,739 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-10 16:51:52] 2026-03-10 23:50:46,739 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-10 16:51:52] 2026-03-10 23:50:46,739 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-10 16:51:52] 2026-03-10 23:50:46,739 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-10 16:51:52] 2026-03-10 23:50:46,739 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-10 16:51:52] 2026-03-10 23:50:46,740 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-10 16:51:52] 2026-03-10 23:50:46,740 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-10 16:51:52] 2026-03-10 23:50:46,740 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-10 16:51:52] 2026-03-10 23:50:46,740 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-10 16:51:52] 2026-03-10 23:50:46,740 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-10 16:51:52] 2026-03-10 23:50:46,740 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-10 16:51:52] 2026-03-10 23:50:46,740 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-10 16:51:52] 2026-03-10 23:50:46,740 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-10 16:51:52] 2026-03-10 23:50:46,740 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-10 16:51:52] 2026-03-10 23:50:46,740 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-10 16:51:52] 2026-03-10 23:50:46,741 | INFO     | job 7049176441 has completed (purged errors)
[2026-03-10 16:51:52] 2026-03-10 23:50:46,741 | INFO     | overall cleanup function is called
[2026-03-10 16:51:52] 2026-03-10 23:50:47,766 | INFO     | --- collectZombieJob: --- 10, [557843]
[2026-03-10 16:51:52] 2026-03-10 23:50:47,767 | INFO     | zombie collector waiting for pid 557843
[2026-03-10 16:51:52] 2026-03-10 23:50:47,767 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-10 16:51:52] 2026-03-10 23:50:47,767 | INFO     | collected zombie processes
[2026-03-10 16:51:52] 2026-03-10 23:50:47,767 | INFO     | will attempt to kill all subprocesses of pid=557843
[2026-03-10 16:51:52] 2026-03-10 23:50:48,325 | INFO     | process IDs to be killed: [557843] (in reverse order)
[2026-03-10 16:51:52] 2026-03-10 23:50:48,540 | WARNING  | found no corresponding commands to process id(s)
[2026-03-10 16:51:52] 2026-03-10 23:50:48,541 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-10 16:51:52] 2026-03-10 23:50:48,560 | INFO     | did not find any defunct processes belonging to 557843
[2026-03-10 16:51:52] 2026-03-10 23:50:48,575 | INFO     | did not find any defunct processes belonging to 557843
[2026-03-10 16:51:52] 2026-03-10 23:50:48,576 | INFO     | ready for new job
[2026-03-10 16:51:52] 2026-03-10 23:50:48,580 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-10 16:51:52] 2026-03-10 23:50:48,582 | INFO     | **************************************
[2026-03-10 16:51:52] 2026-03-10 23:50:48,582 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-10 16:51:52] 2026-03-10 23:50:48,583 | INFO     | **************************************
[2026-03-10 16:51:52] 2026-03-10 23:50:48,583 | INFO     | 
[2026-03-10 16:51:52] 2026-03-10 23:50:48,587 | INFO     | architecture information:
[2026-03-10 16:51:52] 2026-03-10 23:50:48,587 | INFO     | executing command: cat /etc/os-release
[2026-03-10 16:51:52] 2026-03-10 23:50:48,610 | INFO     | cat /etc/os-release:
[2026-03-10 16:51:52] NAME="CentOS Linux"
[2026-03-10 16:51:52] VERSION="7 (Core)"
[2026-03-10 16:51:52] ID="centos"
[2026-03-10 16:51:52] ID_LIKE="rhel fedora"
[2026-03-10 16:51:52] VERSION_ID="7"
[2026-03-10 16:51:52] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-10 16:51:52] ANSI_COLOR="0;31"
[2026-03-10 16:51:52] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-10 16:51:52] HOME_URL="https://www.centos.org/"
[2026-03-10 16:51:52] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-10 16:51:52] 
[2026-03-10 16:51:52] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-10 16:51:52] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-10 16:51:52] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-10 16:51:52] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-10 16:51:52] 
[2026-03-10 16:51:52] 2026-03-10 23:50:48,610 | INFO     | **************************************
[2026-03-10 16:51:52] 2026-03-10 23:50:49,114 | INFO     | executing command: df -mP /home/boinc/slots/0
[2026-03-10 16:51:52] 2026-03-10 23:50:49,157 | INFO     | sufficient remaining disk space (1929857990656 B)
[2026-03-10 16:51:52] 2026-03-10 23:50:49,158 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-10 16:51:52] 2026-03-10 23:50:49,158 | INFO     | current server update state: UPDATING_FINAL
[2026-03-10 16:51:52] 2026-03-10 23:50:49,158 | INFO     | update_server=False
[2026-03-10 16:51:52] 2026-03-10 23:50:49,158 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-10 16:51:52] 2026-03-10 23:50:49,159 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-10 16:51:52] 2026-03-10 23:50:49,285 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-10 16:51:52] 2026-03-10 23:50:49,285 | INFO     | aborting loop
[2026-03-10 16:51:52] 2026-03-10 23:50:49,323 | INFO     | all payload control threads have been joined
[2026-03-10 16:51:52] 2026-03-10 23:50:49,728 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-10 16:51:52] 2026-03-10 23:50:49,902 | INFO     | all data control threads have been joined
[2026-03-10 16:51:52] 2026-03-10 23:50:50,164 | INFO     | [job] retrieve thread has finished
[2026-03-10 16:51:52] 2026-03-10 23:50:50,291 | INFO     | [job] job monitor thread has finished
[2026-03-10 16:51:52] 2026-03-10 23:50:50,328 | INFO     | [payload] control thread has finished
[2026-03-10 16:51:52] 2026-03-10 23:50:50,355 | INFO     | [payload] execute_payloads thread has finished
[2026-03-10 16:51:52] 2026-03-10 23:50:50,357 | INFO     | [job] create_data_payload thread has finished
[2026-03-10 16:51:52] 2026-03-10 23:50:50,536 | INFO     | all job control threads have been joined
[2026-03-10 16:51:52] 2026-03-10 23:50:50,908 | INFO     | [data] control thread has finished
[2026-03-10 16:51:52] 2026-03-10 23:50:51,000 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-10 16:51:52] 2026-03-10 23:50:51,095 | INFO     | [job] validate thread has finished
[2026-03-10 16:51:52] 2026-03-10 23:50:51,336 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-10 16:51:52] 2026-03-10 23:50:51,450 | INFO     | [payload] validate_post thread has finished
[2026-03-10 16:51:52] 2026-03-10 23:50:51,551 | INFO     | [job] control thread has finished
[2026-03-10 16:51:52] 2026-03-10 23:50:51,575 | INFO     | [data] copytool_in thread has finished
[2026-03-10 16:51:52] 2026-03-10 23:50:51,575 | INFO     | [payload] validate_pre thread has finished
[2026-03-10 16:51:52] 2026-03-10 23:50:51,725 | INFO     | [payload] failed_post thread has finished
[2026-03-10 16:51:52] 2026-03-10 23:50:51,741 | INFO     | [data] copytool_out thread has finished
[2026-03-10 16:51:52] 2026-03-10 23:50:52,342 | INFO     | [job] queue monitor thread has finished
[2026-03-10 16:51:52] 2026-03-10 23:50:53,169 | INFO     | [data] queue_monitor thread has finished
[2026-03-10 16:51:52] 2026-03-10 23:51:20,637 | INFO     | PID=550030 has CPU usage=3.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-10 16:51:52] 2026-03-10 23:51:20,637 | INFO     | .. there are 49 such processes running
[2026-03-10 16:51:52] 2026-03-10 23:51:20,638 | INFO     | found 0 job(s) in 20 queues
[2026-03-10 16:51:52] 2026-03-10 23:51:20,638 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-10 16:51:52] 2026-03-10 23:51:20,638 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-10 16:51:52] 2026-03-10 23:51:44,643 | INFO     | [monitor] cgroup control has ended
[2026-03-10 16:51:52] 2026-03-10 23:51:45,802 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139957216974656)>', '<ExcThread(monitor, started 139956896896768)>']
[2026-03-10 16:51:52] 2026-03-10 23:51:45,818 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-10 16:51:52] 2026-03-10 23:51:45,818 | INFO     | [monitor] control thread has ended
[2026-03-10 16:51:52] 2026-03-10 23:51:50,828 | INFO     | all workflow threads have been joined
[2026-03-10 16:51:52] 2026-03-10 23:51:50,828 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-10 16:51:52] 2026-03-10 23:51:50,828 | INFO     | traces error code: 0
[2026-03-10 16:51:52] 2026-03-10 23:51:50,829 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-10 16:51:52] 2026-03-10 23:51:51,441 [wrapper] ==== pilot stdout END ====
[2026-03-10 16:51:52] 2026-03-10 23:51:51,477 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-10 16:51:52] 2026-03-10 23:51:51,498 [wrapper] pilotpid: 550030
[2026-03-10 16:51:52] 2026-03-10 23:51:51,522 [wrapper] Pilot exit status: 0
[2026-03-10 16:51:52] 2026-03-10 23:51:51,639 [wrapper] pandaids: 7049176441
[2026-03-10 16:51:52] 2026-03-10 23:51:52,252 [wrapper] cleanup supervisor_pilot  550036 550031
[2026-03-10 16:51:52] 2026-03-10 23:51:52,270 [wrapper] Test setup, not cleaning
[2026-03-10 16:51:52] 2026-03-10 23:51:52,297 [wrapper] apfmon messages muted
[2026-03-10 16:51:52] 2026-03-10 23:51:52,330 [wrapper] ==== wrapper stdout END ====
[2026-03-10 16:51:52] 2026-03-10 23:51:52,371 [wrapper] ==== wrapper stderr END ====
[2026-03-10 16:51:52]  *** Error codes and diagnostics ***
[2026-03-10 16:51:52]     "exeErrorCode": 65,
[2026-03-10 16:51:52]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1)",
[2026-03-10 16:51:52]     "pilotErrorCode": 1305,
[2026-03-10 16:51:52]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1)",
[2026-03-10 16:51:52]  *** Listing of results directory ***
[2026-03-10 16:51:53] total 215028
[2026-03-10 16:51:53] -rw-r--r--. 1 boinc boinc      5111 Mar 10 13:40 queuedata.json
[2026-03-10 16:51:53] -rw-r--r--. 1 boinc boinc    585013 Mar 10 13:40 pilot3.tar.gz
[2026-03-10 16:51:53] -rwx------. 1 boinc boinc     36322 Mar 10 13:40 runpilot2-wrapper.sh
[2026-03-10 16:51:53] -rw-r--r--. 1 boinc boinc       100 Mar 10 16:45 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-10 16:51:53] -rwxr-xr-x. 1 boinc boinc      7986 Mar 10 16:45 run_atlas
[2026-03-10 16:51:53] -rw-r--r--. 1 boinc boinc       105 Mar 10 16:45 job.xml
[2026-03-10 16:51:53] -rw-r--r--. 1 boinc boinc      6594 Mar 10 16:45 init_data.xml
[2026-03-10 16:51:53] -rw-r--r--. 2 boinc boinc 216030334 Mar 10 16:45 EVNT.48967008._000225.pool.root.1
[2026-03-10 16:51:53] -rw-r--r--. 2 boinc boinc     15845 Mar 10 16:45 start_atlas.sh
[2026-03-10 16:51:53] drwxrwx--x. 2 boinc boinc      4096 Mar 10 16:45 shared
[2026-03-10 16:51:53] -rw-r--r--. 2 boinc boinc    597512 Mar 10 16:45 input.tar.gz
[2026-03-10 16:51:53] -rw-r--r--. 1 boinc boinc         0 Mar 10 16:45 boinc_lockfile
[2026-03-10 16:51:53] -rw-r--r--. 1 boinc boinc      2560 Mar 10 16:45 pandaJob.out
[2026-03-10 16:51:53] -rw-------. 1 boinc boinc   1006644 Mar 10 16:46 agis_schedconf.cvmfs.json
[2026-03-10 16:51:53] -rw-------. 1 boinc boinc   1511578 Mar 10 16:46 agis_ddmendpoints.agis.ALL.json
[2026-03-10 16:51:53] -rw-------. 1 boinc boinc       445 Mar 10 16:46 workernode_map.json
[2026-03-10 16:51:53] drwx------. 5 boinc boinc      4096 Mar 10 16:46 pilot3
[2026-03-10 16:51:53] -rw-r--r--. 1 boinc boinc       525 Mar 10 16:48 boinc_task_state.xml
[2026-03-10 16:51:53] -rw-------. 1 boinc boinc       947 Mar 10 16:48 memory_monitor_summary.json
[2026-03-10 16:51:53] -rw-------. 1 boinc boinc     21968 Mar 10 16:48 log.48967011._005736.job.log.tgz.1
[2026-03-10 16:51:53] -rw-------. 1 boinc boinc      7028 Mar 10 16:50 heartbeat.json
[2026-03-10 16:51:53] -rw-------. 1 boinc boinc        95 Mar 10 16:51 pilot_heartbeat.json
[2026-03-10 16:51:53] -rw-r--r--. 1 boinc boinc      8192 Mar 10 16:51 boinc_mmap_file
[2026-03-10 16:51:53] -rw-r--r--. 1 boinc boinc        23 Mar 10 16:51 wrapper_checkpoint.txt
[2026-03-10 16:51:53] -rw-------. 1 boinc boinc      4818 Mar 10 16:51 pilotlog.txt
[2026-03-10 16:51:53] -rw-------. 1 boinc boinc     89327 Mar 10 16:51 log.48967011._005736.job.log.1
[2026-03-10 16:51:53] -rw-------. 1 boinc boinc       188 Mar 10 16:51 output.list
[2026-03-10 16:51:53] -rw-r--r--. 1 boinc boinc       620 Mar 10 16:51 runtime_log
[2026-03-10 16:51:53] -rw-------. 1 boinc boinc    133120 Mar 10 16:51 result.tar.gz
[2026-03-10 16:51:53] -rw-r--r--. 1 boinc boinc      8635 Mar 10 16:51 runtime_log.err
[2026-03-10 16:51:53] -rw-------. 1 boinc boinc       643 Mar 10 16:51 6xaKDmx3IK9n9Rq4apOajLDm4fhM0noT9bVooX4SDmcIeLDmLwVDvm.diag
[2026-03-10 16:51:53] -rw-r--r--. 1 boinc boinc     21724 Mar 10 16:51 stderr.txt
[2026-03-10 16:51:53] No HITS result produced
[2026-03-10 16:51:53]  *** Contents of shared directory: ***
[2026-03-10 16:51:53] total 211704
[2026-03-10 16:51:53] -rw-r--r--. 2 boinc boinc 216030334 Mar 10 16:45 ATLAS.root_0
[2026-03-10 16:51:53] -rw-r--r--. 2 boinc boinc     15845 Mar 10 16:45 start_atlas.sh
[2026-03-10 16:51:53] -rw-r--r--. 2 boinc boinc    597512 Mar 10 16:45 input.tar.gz
[2026-03-10 16:51:53] -rw-------. 1 boinc boinc    133120 Mar 10 16:51 result.tar.gz
16:51:54 (546070): run_atlas exited; CPU time 34.559288
16:51:54 (546070): called boinc_finish(0)

</stderr_txt>
]]>

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