Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
21:50:07 (3208553): wrapper (7.7.26015): starting
21:50:07 (3208553): wrapper: running run_atlas (--nthreads 3)
[2026-03-10 21:50:07] Arguments: --nthreads 3
[2026-03-10 21:50:07] Threads: 3
[2026-03-10 21:50:07] Checking for CVMFS
[2026-03-10 21:50:07] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-10 21:50:08] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-10 21:50:08] Running cvmfs_config stat atlas.cern.ch
[2026-03-10 21:50:08] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-10 21:50:08] 2.9.2.0 3127573 367 60520 157129 1 50 7423509 36864001 0 130560 0 160301 99.982 17851 10017 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-10 21:50:08] CVMFS is ok
[2026-03-10 21:50:08] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-10 21:50:08] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-10 21:50:08] Further information can be found at the LHC@home message board.
[2026-03-10 21:50:08] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-10 21:50:08] Checking for apptainer binary...
[2026-03-10 21:50:08] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-10 21:50:08] Running /usr/bin/apptainer --version
[2026-03-10 21:50:08] apptainer version 1.4.1-1.1
[2026-03-10 21:50:08] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-10 21:50:08] belleA259
[2026-03-10 21:50:08] apptainer works
[2026-03-10 21:50:08] Set ATHENA_PROC_NUMBER=3
[2026-03-10 21:50:08] Set ATHENA_CORE_NUMBER=3
[2026-03-10 21:50:08] Starting ATLAS job with PandaID=7036056568
[2026-03-10 21:50:08] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-10 23:30:42]  *** The last 200 lines of the pilot log: ***
[2026-03-10 23:30:42] 2026-03-10 22:30:10,401 | INFO     | job 7036056568 has completed (purged errors)
[2026-03-10 23:30:42] 2026-03-10 22:30:10,401 | INFO     | overall cleanup function is called
[2026-03-10 23:30:42] 2026-03-10 22:30:11,408 | INFO     | --- collectZombieJob: --- 10, [3217052]
[2026-03-10 23:30:42] 2026-03-10 22:30:11,408 | INFO     | zombie collector waiting for pid 3217052
[2026-03-10 23:30:42] 2026-03-10 22:30:11,408 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-10 23:30:42] 2026-03-10 22:30:11,408 | INFO     | collected zombie processes
[2026-03-10 23:30:42] 2026-03-10 22:30:11,408 | INFO     | will attempt to kill all subprocesses of pid=3217052
[2026-03-10 23:30:42] 2026-03-10 22:30:11,463 | INFO     | process IDs to be killed: [3217052] (in reverse order)
[2026-03-10 23:30:42] 2026-03-10 22:30:11,493 | WARNING  | found no corresponding commands to process id(s)
[2026-03-10 23:30:42] 2026-03-10 22:30:11,493 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-10 23:30:42] 2026-03-10 22:30:11,495 | INFO     | did not find any defunct processes belonging to 3217052
[2026-03-10 23:30:42] 2026-03-10 22:30:11,496 | INFO     | did not find any defunct processes belonging to 3217052
[2026-03-10 23:30:42] 2026-03-10 22:30:11,496 | INFO     | ready for new job
[2026-03-10 23:30:42] 2026-03-10 22:30:11,496 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-10 23:30:42] 2026-03-10 22:30:11,497 | INFO     | **************************************
[2026-03-10 23:30:42] 2026-03-10 22:30:11,497 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-10 23:30:42] 2026-03-10 22:30:11,497 | INFO     | **************************************
[2026-03-10 23:30:42] 2026-03-10 22:30:11,497 | INFO     | 
[2026-03-10 23:30:42] 2026-03-10 22:30:11,497 | INFO     | architecture information:
[2026-03-10 23:30:42] 2026-03-10 22:30:11,497 | INFO     | executing command: cat /etc/os-release
[2026-03-10 23:30:42] 2026-03-10 22:30:11,507 | INFO     | cat /etc/os-release:
[2026-03-10 23:30:42] NAME="CentOS Linux"
[2026-03-10 23:30:42] VERSION="7 (Core)"
[2026-03-10 23:30:42] ID="centos"
[2026-03-10 23:30:42] ID_LIKE="rhel fedora"
[2026-03-10 23:30:42] VERSION_ID="7"
[2026-03-10 23:30:42] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-10 23:30:42] ANSI_COLOR="0;31"
[2026-03-10 23:30:42] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-10 23:30:42] HOME_URL="https://www.centos.org/"
[2026-03-10 23:30:42] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-10 23:30:42] 
[2026-03-10 23:30:42] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-10 23:30:42] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-10 23:30:42] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-10 23:30:42] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-10 23:30:42] 
[2026-03-10 23:30:42] 2026-03-10 22:30:11,507 | INFO     | **************************************
[2026-03-10 23:30:42] 2026-03-10 22:30:12,010 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-10 23:30:42] 2026-03-10 22:30:12,023 | INFO     | sufficient remaining disk space (354381987840 B)
[2026-03-10 23:30:42] 2026-03-10 22:30:12,023 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-10 23:30:42] 2026-03-10 22:30:12,024 | INFO     | current server update state: UPDATING_FINAL
[2026-03-10 23:30:42] 2026-03-10 22:30:12,024 | INFO     | update_server=False
[2026-03-10 23:30:42] 2026-03-10 22:30:12,024 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-10 23:30:42] 2026-03-10 22:30:12,024 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-10 23:30:42] 2026-03-10 22:30:12,024 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-10 23:30:42] 2026-03-10 22:30:12,173 | INFO     | all payload control threads have been joined
[2026-03-10 23:30:42] 2026-03-10 22:30:12,721 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-10 23:30:42] 2026-03-10 22:30:12,877 | INFO     | all data control threads have been joined
[2026-03-10 23:30:42] 2026-03-10 22:30:13,029 | INFO     | [job] retrieve thread has finished
[2026-03-10 23:30:42] 2026-03-10 22:30:13,030 | INFO     | [job] queue monitor thread has finished
[2026-03-10 23:30:42] 2026-03-10 22:30:13,149 | INFO     | [data] copytool_in thread has finished
[2026-03-10 23:30:42] 2026-03-10 22:30:13,179 | INFO     | [payload] control thread has finished
[2026-03-10 23:30:42] 2026-03-10 22:30:13,378 | INFO     | [payload] execute_payloads thread has finished
[2026-03-10 23:30:42] 2026-03-10 22:30:13,602 | INFO     | [payload] validate_post thread has finished
[2026-03-10 23:30:42] 2026-03-10 22:30:13,725 | INFO     | all job control threads have been joined
[2026-03-10 23:30:42] 2026-03-10 22:30:13,883 | INFO     | [data] control thread has finished
[2026-03-10 23:30:42] 2026-03-10 22:30:14,012 | INFO     | [payload] failed_post thread has finished
[2026-03-10 23:30:42] 2026-03-10 22:30:14,399 | INFO     | [job] validate thread has finished
[2026-03-10 23:30:42] 2026-03-10 22:30:14,441 | INFO     | [job] create_data_payload thread has finished
[2026-03-10 23:30:42] 2026-03-10 22:30:14,506 | INFO     | [payload] validate_pre thread has finished
[2026-03-10 23:30:42] 2026-03-10 22:30:14,727 | INFO     | [data] copytool_out thread has finished
[2026-03-10 23:30:42] 2026-03-10 22:30:14,731 | INFO     | [job] control thread has finished
[2026-03-10 23:30:42] 2026-03-10 22:30:15,623 | WARNING  | process 3217052 can no longer be monitored (due to stat problems) - aborting
[2026-03-10 23:30:42] 2026-03-10 22:30:15,661 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-03-10 23:30:42] 2026-03-10 22:30:15,662 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-03-10 23:30:42] 2026-03-10 22:30:15,662 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-03-10 23:30:42] 2026-03-10 22:30:15,662 | WARNING  | maxPSS not found in memory monitor output
[2026-03-10 23:30:42] 2026-03-10 22:30:15,662 | INFO     | skipping file size check of payload stdout file (/local/data/boinc/slots/0/PanDA_Pilot-7036056568/payload.stdout) since it has not been created yet
[2026-03-10 23:30:42] 2026-03-10 22:30:15,662 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-10 23:30:42] 2026-03-10 22:30:15,673 | INFO     | sufficient remaining disk space (354381987840 B)
[2026-03-10 23:30:42] 2026-03-10 22:30:15,674 | WARNING  | skipping size check of workdir since it has not been created yet
[2026-03-10 23:30:42] 2026-03-10 22:30:15,674 | INFO     | output file size check: skipping output file /local/data/boinc/slots/0/PanDA_Pilot-7036056568/HITS.48838586._001826.pool.root.1 since it does not exist
[2026-03-10 23:30:42] 2026-03-10 22:30:15,724 | INFO     | number of running child processes to parent process 3217052: 1
[2026-03-10 23:30:42] 2026-03-10 22:30:15,724 | INFO     | maximum number of monitored processes: 6
[2026-03-10 23:30:42] 2026-03-10 22:30:15,724 | INFO     | aborting job monitoring since job object (job id=7036056568) has expired
[2026-03-10 23:30:42] 2026-03-10 22:30:15,725 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-10 23:30:42] 2026-03-10 22:30:15,725 | INFO     | will abort loop
[2026-03-10 23:30:42] 2026-03-10 22:30:16,031 | INFO     | [data] queue_monitor thread has finished
[2026-03-10 23:30:42] 2026-03-10 22:30:16,730 | INFO     | [job] job monitor thread has finished
[2026-03-10 23:30:42] 2026-03-10 22:30:22,881 | INFO     | job.realtimelogging is not enabled
[2026-03-10 23:30:42] 2026-03-10 22:30:23,887 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-10 23:30:42] 2026-03-10 22:30:26,297 | INFO     | [monitor] cgroup control has ended
[2026-03-10 23:30:42] 2026-03-10 22:30:28,175 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139684771063616)>', '<ExcThread(monitor, started 139684147623680)>']
[2026-03-10 23:30:42] 2026-03-10 22:30:33,201 | INFO     | all workflow threads have been joined
[2026-03-10 23:30:42] 2026-03-10 22:30:33,201 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-10 23:30:42] 2026-03-10 22:30:33,202 | INFO     | traces error code: 0
[2026-03-10 23:30:42] 2026-03-10 22:30:33,202 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-10 23:30:42] 2026-03-10 22:30:42,268 | INFO     | PID=3212609 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-10 23:30:42] 2026-03-10 22:30:42,268 | INFO     | found 0 job(s) in 20 queues
[2026-03-10 23:30:42] 2026-03-10 22:30:42,268 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-10 23:30:42] 2026-03-10 22:30:42,268 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-10 23:30:42] 2026-03-10 22:30:42,268 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-10 23:30:42] 2026-03-10 22:30:42,268 | INFO     | [monitor] control thread has ended
[2026-03-10 23:30:42] 2026-03-10 22:30:42,315 [wrapper] ==== pilot stdout END ====
[2026-03-10 23:30:42] 2026-03-10 22:30:42,318 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-10 23:30:42] 2026-03-10 22:30:42,320 [wrapper] pilotpid: 3212609
[2026-03-10 23:30:42] 2026-03-10 22:30:42,322 [wrapper] Pilot exit status: 0
[2026-03-10 23:30:42] 2026-03-10 22:30:42,330 [wrapper] pandaids: 7036056568
[2026-03-10 23:30:42] 2026-03-10 22:30:42,350 [wrapper] cleanup supervisor_pilot 3228432 3212610
[2026-03-10 23:30:42] 2026-03-10 22:30:42,353 [wrapper] Test setup, not cleaning
[2026-03-10 23:30:42] 2026-03-10 22:30:42,355 [wrapper] apfmon messages muted
[2026-03-10 23:30:42] 2026-03-10 22:30:42,358 [wrapper] ==== wrapper stdout END ====
[2026-03-10 23:30:42] 2026-03-10 22:30:42,360 [wrapper] ==== wrapper stderr END ====
[2026-03-10 23:30:42]  *** Error codes and diagnostics ***
[2026-03-10 23:30:42]     "exeErrorCode": 0,
[2026-03-10 23:30:42]     "exeErrorDiag": "",
[2026-03-10 23:30:42]     "pilotErrorCode": 0,
[2026-03-10 23:30:42]     "pilotErrorDiag": "",
[2026-03-10 23:30:42]  *** Listing of results directory ***
[2026-03-10 23:30:42] total 485680
[2026-03-10 23:30:42] -rw-r--r-- 1 boinc boinc    584627 Mar  2 18:50 pilot3.tar.gz
[2026-03-10 23:30:42] -rw-r--r-- 1 boinc boinc      5111 Mar  2 19:01 queuedata.json
[2026-03-10 23:30:42] -rwx------ 1 boinc boinc     36322 Mar  2 19:02 runpilot2-wrapper.sh
[2026-03-10 23:30:42] -rw-r--r-- 1 boinc boinc       100 Mar 10 21:50 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-10 23:30:42] -rwxr-xr-x 1 boinc boinc      7986 Mar 10 21:50 run_atlas
[2026-03-10 23:30:42] -rw-r--r-- 1 boinc boinc       105 Mar 10 21:50 job.xml
[2026-03-10 23:30:42] -rw-r--r-- 2 boinc boinc 279011432 Mar 10 21:50 EVNT.48220221._000071.pool.root.1
[2026-03-10 23:30:42] -rw-r--r-- 2 boinc boinc    597955 Mar 10 21:50 input.tar.gz
[2026-03-10 23:30:42] -rw-r--r-- 2 boinc boinc     15845 Mar 10 21:50 start_atlas.sh
[2026-03-10 23:30:42] drwxrwx--x 2 boinc boinc      4096 Mar 10 21:50 shared
[2026-03-10 23:30:42] -rw-r--r-- 1 boinc boinc         0 Mar 10 21:50 boinc_setup_complete
[2026-03-10 23:30:42] -rw-r--r-- 1 boinc boinc      6446 Mar 10 21:50 init_data.xml
[2026-03-10 23:30:42] -rw-r--r-- 1 boinc boinc         0 Mar 10 21:50 boinc_lockfile
[2026-03-10 23:30:42] -rw-r--r-- 1 boinc boinc      2561 Mar 10 21:50 pandaJob.out
[2026-03-10 23:30:42] -rw------- 1 boinc boinc   1006644 Mar 10 21:50 agis_schedconf.cvmfs.json
[2026-03-10 23:30:42] -rw------- 1 boinc boinc   1511578 Mar 10 21:50 agis_ddmendpoints.agis.ALL.json
[2026-03-10 23:30:42] -rw------- 1 boinc boinc       425 Mar 10 21:50 workernode_map.json
[2026-03-10 23:30:42] drwx------ 5 boinc boinc      4096 Mar 10 21:50 pilot3
[2026-03-10 23:30:42] -rw------- 1 boinc boinc 212137124 Mar 10 23:29 HITS.48838586._001826.pool.root.1
[2026-03-10 23:30:42] -rw------- 1 boinc boinc        95 Mar 10 23:29 pilot_heartbeat.json
[2026-03-10 23:30:42] -rw-r--r-- 1 boinc boinc       530 Mar 10 23:29 boinc_task_state.xml
[2026-03-10 23:30:42] -rw------- 1 boinc boinc      1014 Mar 10 23:30 memory_monitor_summary.json
[2026-03-10 23:30:42] -rw------- 1 boinc boinc    262825 Mar 10 23:30 log.48838586._001826.job.log.tgz.1
[2026-03-10 23:30:42] -rw------- 1 boinc boinc      6300 Mar 10 23:30 heartbeat.json
[2026-03-10 23:30:42] -rw-r--r-- 1 boinc boinc        27 Mar 10 23:30 wrapper_checkpoint.txt
[2026-03-10 23:30:42] -rw-r--r-- 1 boinc boinc      8192 Mar 10 23:30 boinc_mmap_file
[2026-03-10 23:30:42] -rw------- 1 boinc boinc       747 Mar 10 23:30 pilotlog.txt
[2026-03-10 23:30:42] -rw------- 1 boinc boinc    867526 Mar 10 23:30 log.48838586._001826.job.log.1
[2026-03-10 23:30:42] -rw------- 1 boinc boinc       357 Mar 10 23:30 output.list
[2026-03-10 23:30:42] -rw-r--r-- 1 boinc boinc       620 Mar 10 23:30 runtime_log
[2026-03-10 23:30:42] -rw------- 1 boinc boinc   1146880 Mar 10 23:30 result.tar.gz
[2026-03-10 23:30:42] -rw-r--r-- 1 boinc boinc      8911 Mar 10 23:30 runtime_log.err
[2026-03-10 23:30:42] -rw------- 1 boinc boinc       660 Mar 10 23:30 ByuKDmEmMH9n9Rq4apOajLDm4fhM0noT9bVooX4SDm1GCLDmW4Tjxn.diag
[2026-03-10 23:30:42] -rw-r--r-- 1 boinc boinc     12689 Mar 10 23:30 stderr.txt
[2026-03-10 23:30:42] HITS file was successfully produced:
[2026-03-10 23:30:42] -rw------- 1 boinc boinc 212137124 Mar 10 23:29 shared/HITS.pool.root.1
[2026-03-10 23:30:42]  *** Contents of shared directory: ***
[2026-03-10 23:30:42] total 481372
[2026-03-10 23:30:42] -rw-r--r-- 2 boinc boinc 279011432 Mar 10 21:50 ATLAS.root_0
[2026-03-10 23:30:42] -rw-r--r-- 2 boinc boinc    597955 Mar 10 21:50 input.tar.gz
[2026-03-10 23:30:42] -rw-r--r-- 2 boinc boinc     15845 Mar 10 21:50 start_atlas.sh
[2026-03-10 23:30:42] -rw------- 1 boinc boinc 212137124 Mar 10 23:29 HITS.pool.root.1
[2026-03-10 23:30:42] -rw------- 1 boinc boinc   1146880 Mar 10 23:30 result.tar.gz
23:30:44 (3208553): run_atlas exited; CPU time 17235.468307
23:30:44 (3208553): called boinc_finish(0)

</stderr_txt>
]]>

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