Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
15:06:43 (3745846): wrapper (7.7.26015): starting
15:06:43 (3745846): wrapper: running run_atlas (--nthreads 4)
[2026-03-11 15:06:43] Arguments: --nthreads 4
[2026-03-11 15:06:43] Threads: 4
[2026-03-11 15:06:43] Checking for CVMFS
[2026-03-11 15:06:43] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-11 15:06:43] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-11 15:06:43] Running cvmfs_config stat atlas.cern.ch
[2026-03-11 15:06:43] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-11 15:06:43] 2.9.2.0 41054 20084 104212 157156 0 50 31033737 36864001 0 130560 0 9162668 99.985 749704 9774 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-11 15:06:43] CVMFS is ok
[2026-03-11 15:06:43] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-11 15:06:43] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-11 15:06:43] Further information can be found at the LHC@home message board.
[2026-03-11 15:06:43] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-11 15:06:43] Checking for apptainer binary...
[2026-03-11 15:06:43] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-11 15:06:43] Running /usr/bin/apptainer --version
[2026-03-11 15:06:43] apptainer version 1.4.1-1.1
[2026-03-11 15:06:43] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-11 15:06:43] thA375
[2026-03-11 15:06:43] apptainer works
[2026-03-11 15:06:43] Set ATHENA_PROC_NUMBER=4
[2026-03-11 15:06:43] Set ATHENA_CORE_NUMBER=4
[2026-03-11 15:06:43] Starting ATLAS job with PandaID=7048862747
[2026-03-11 15:06:43] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-11 16:56:10]  *** The last 200 lines of the pilot log: ***
[2026-03-11 16:56:10] 2026-03-11 15:55:31,006 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-11 16:56:10] 2026-03-11 15:55:31,006 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-11 16:56:10] 2026-03-11 15:55:31,006 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-11 16:56:10] 2026-03-11 15:55:31,007 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-11 16:56:10] 2026-03-11 15:55:31,007 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-11 16:56:10] 2026-03-11 15:55:31,007 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-11 16:56:10] 2026-03-11 15:55:31,007 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-11 16:56:10] 2026-03-11 15:55:31,007 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-11 16:56:10] 2026-03-11 15:55:31,007 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-11 16:56:10] 2026-03-11 15:55:31,007 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-11 16:56:10] 2026-03-11 15:55:31,007 | INFO     | job 7048862747 has completed (purged errors)
[2026-03-11 16:56:10] 2026-03-11 15:55:31,007 | INFO     | overall cleanup function is called
[2026-03-11 16:56:10] 2026-03-11 15:55:32,013 | INFO     | --- collectZombieJob: --- 10, [3754476]
[2026-03-11 16:56:10] 2026-03-11 15:55:32,014 | INFO     | zombie collector waiting for pid 3754476
[2026-03-11 16:56:10] 2026-03-11 15:55:32,014 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-11 16:56:10] 2026-03-11 15:55:32,014 | INFO     | collected zombie processes
[2026-03-11 16:56:10] 2026-03-11 15:55:32,014 | INFO     | will attempt to kill all subprocesses of pid=3754476
[2026-03-11 16:56:10] 2026-03-11 15:55:32,066 | INFO     | process IDs to be killed: [3754476] (in reverse order)
[2026-03-11 16:56:10] 2026-03-11 15:55:32,104 | WARNING  | found no corresponding commands to process id(s)
[2026-03-11 16:56:10] 2026-03-11 15:55:32,104 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-11 16:56:10] 2026-03-11 15:55:32,106 | INFO     | did not find any defunct processes belonging to 3754476
[2026-03-11 16:56:10] 2026-03-11 15:55:32,107 | INFO     | did not find any defunct processes belonging to 3754476
[2026-03-11 16:56:10] 2026-03-11 15:55:32,108 | INFO     | ready for new job
[2026-03-11 16:56:10] 2026-03-11 15:55:32,108 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-11 16:56:10] 2026-03-11 15:55:32,108 | INFO     | **************************************
[2026-03-11 16:56:10] 2026-03-11 15:55:32,108 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-11 16:56:10] 2026-03-11 15:55:32,108 | INFO     | **************************************
[2026-03-11 16:56:10] 2026-03-11 15:55:32,108 | INFO     | 
[2026-03-11 16:56:10] 2026-03-11 15:55:32,109 | INFO     | architecture information:
[2026-03-11 16:56:10] 2026-03-11 15:55:32,109 | INFO     | executing command: cat /etc/os-release
[2026-03-11 16:56:10] 2026-03-11 15:55:32,123 | INFO     | cat /etc/os-release:
[2026-03-11 16:56:10] NAME="CentOS Linux"
[2026-03-11 16:56:10] VERSION="7 (Core)"
[2026-03-11 16:56:10] ID="centos"
[2026-03-11 16:56:10] ID_LIKE="rhel fedora"
[2026-03-11 16:56:10] VERSION_ID="7"
[2026-03-11 16:56:10] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-11 16:56:10] ANSI_COLOR="0;31"
[2026-03-11 16:56:10] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-11 16:56:10] HOME_URL="https://www.centos.org/"
[2026-03-11 16:56:10] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-11 16:56:10] 
[2026-03-11 16:56:10] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-11 16:56:10] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-11 16:56:10] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-11 16:56:10] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-11 16:56:10] 
[2026-03-11 16:56:10] 2026-03-11 15:55:32,124 | INFO     | **************************************
[2026-03-11 16:56:10] 2026-03-11 15:55:32,627 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-11 16:56:10] 2026-03-11 15:55:32,643 | INFO     | sufficient remaining disk space (226501853184 B)
[2026-03-11 16:56:10] 2026-03-11 15:55:32,643 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-11 16:56:10] 2026-03-11 15:55:32,643 | INFO     | current server update state: UPDATING_FINAL
[2026-03-11 16:56:10] 2026-03-11 15:55:32,643 | INFO     | update_server=False
[2026-03-11 16:56:10] 2026-03-11 15:55:32,643 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-11 16:56:10] 2026-03-11 15:55:32,644 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-11 16:56:10] 2026-03-11 15:55:32,701 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-11 16:56:10] 2026-03-11 15:55:32,888 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-03-11 16:56:10] 2026-03-11 15:55:32,888 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-03-11 16:56:10] 2026-03-11 15:55:32,888 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-11 16:56:10] 2026-03-11 15:55:32,888 | INFO     | will abort loop
[2026-03-11 16:56:10] 2026-03-11 15:55:33,509 | INFO     | all payload control threads have been joined
[2026-03-11 16:56:10] 2026-03-11 15:55:33,528 | INFO     | all job control threads have been joined
[2026-03-11 16:56:10] 2026-03-11 15:55:33,626 | INFO     | all data control threads have been joined
[2026-03-11 16:56:10] 2026-03-11 15:55:33,649 | INFO     | [job] queue monitor thread has finished
[2026-03-11 16:56:10] 2026-03-11 15:55:33,649 | INFO     | [job] retrieve thread has finished
[2026-03-11 16:56:10] 2026-03-11 15:55:33,650 | INFO     | [payload] failed_post thread has finished
[2026-03-11 16:56:10] 2026-03-11 15:55:33,894 | INFO     | [job] job monitor thread has finished
[2026-03-11 16:56:10] 2026-03-11 15:55:33,990 | INFO     | [payload] execute_payloads thread has finished
[2026-03-11 16:56:10] 2026-03-11 15:55:34,182 | INFO     | [job] create_data_payload thread has finished
[2026-03-11 16:56:10] 2026-03-11 15:55:34,193 | INFO     | [job] validate thread has finished
[2026-03-11 16:56:10] 2026-03-11 15:55:34,281 | INFO     | [payload] validate_pre thread has finished
[2026-03-11 16:56:10] 2026-03-11 15:55:34,507 | INFO     | [data] copytool_in thread has finished
[2026-03-11 16:56:10] 2026-03-11 15:55:34,515 | INFO     | [payload] control thread has finished
[2026-03-11 16:56:10] 2026-03-11 15:55:34,529 | INFO     | [payload] validate_post thread has finished
[2026-03-11 16:56:10] 2026-03-11 15:55:34,533 | INFO     | [job] control thread has finished
[2026-03-11 16:56:10] 2026-03-11 15:55:34,631 | INFO     | [data] control thread has finished
[2026-03-11 16:56:10] 2026-03-11 15:55:34,707 | INFO     | [data] copytool_out thread has finished
[2026-03-11 16:56:10] 2026-03-11 15:55:34,875 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-11 16:56:10] 2026-03-11 15:55:35,547 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-11 16:56:10] 2026-03-11 15:55:39,554 | INFO     | [data] queue_monitor thread has finished
[2026-03-11 16:56:10] 2026-03-11 15:56:03,176 | INFO     | PID=3749965 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-11 16:56:10] 2026-03-11 15:56:03,176 | INFO     | found 0 job(s) in 20 queues
[2026-03-11 16:56:10] 2026-03-11 15:56:03,176 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-11 16:56:10] 2026-03-11 15:56:03,176 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-11 16:56:10] 2026-03-11 15:56:03,892 | INFO     | [monitor] cgroup control has ended
[2026-03-11 16:56:10] 2026-03-11 15:56:05,164 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139662137308992)>', '<ExcThread(monitor, started 139661062174464)>']
[2026-03-11 16:56:10] 2026-03-11 15:56:05,186 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-11 16:56:10] 2026-03-11 15:56:05,187 | INFO     | [monitor] control thread has ended
[2026-03-11 16:56:10] 2026-03-11 15:56:10,190 | INFO     | all workflow threads have been joined
[2026-03-11 16:56:10] 2026-03-11 15:56:10,190 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-11 16:56:10] 2026-03-11 15:56:10,190 | INFO     | traces error code: 0
[2026-03-11 16:56:10] 2026-03-11 15:56:10,190 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-11 16:56:10] 2026-03-11 15:56:10,256 [wrapper] ==== pilot stdout END ====
[2026-03-11 16:56:10] 2026-03-11 15:56:10,261 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-11 16:56:10] 2026-03-11 15:56:10,265 [wrapper] pilotpid: 3749965
[2026-03-11 16:56:10] 2026-03-11 15:56:10,269 [wrapper] Pilot exit status: 0
[2026-03-11 16:56:10] 2026-03-11 15:56:10,280 [wrapper] pandaids: 7048862747
[2026-03-11 16:56:10] 2026-03-11 15:56:10,304 [wrapper] cleanup supervisor_pilot 3764273 3749966
[2026-03-11 16:56:10] 2026-03-11 15:56:10,308 [wrapper] Test setup, not cleaning
[2026-03-11 16:56:10] 2026-03-11 15:56:10,312 [wrapper] apfmon messages muted
[2026-03-11 16:56:10] 2026-03-11 15:56:10,316 [wrapper] ==== wrapper stdout END ====
[2026-03-11 16:56:10] 2026-03-11 15:56:10,320 [wrapper] ==== wrapper stderr END ====
[2026-03-11 16:56:10]  *** Error codes and diagnostics ***
[2026-03-11 16:56:10]     "exeErrorCode": 0,
[2026-03-11 16:56:10]     "exeErrorDiag": "",
[2026-03-11 16:56:10]     "pilotErrorCode": 0,
[2026-03-11 16:56:10]     "pilotErrorDiag": "",
[2026-03-11 16:56:10]  *** Listing of results directory ***
[2026-03-11 16:56:10] total 643536
[2026-03-11 16:56:10] -rw-r--r-- 1 boinc boinc    584627 Mar 10 15:07 pilot3.tar.gz
[2026-03-11 16:56:10] -rwx------ 1 boinc boinc     36322 Mar 10 15:08 runpilot2-wrapper.sh
[2026-03-11 16:56:10] -rw-r--r-- 1 boinc boinc      5111 Mar 10 15:09 queuedata.json
[2026-03-11 16:56:10] -rw-r--r-- 1 boinc boinc       100 Mar 11 15:06 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-11 16:56:10] -rwxr-xr-x 1 boinc boinc      7986 Mar 11 15:06 run_atlas
[2026-03-11 16:56:10] -rw-r--r-- 1 boinc boinc       105 Mar 11 15:06 job.xml
[2026-03-11 16:56:10] -rw-r--r-- 2 boinc boinc 359096827 Mar 11 15:06 EVNT.48997965._000055.pool.root.1
[2026-03-11 16:56:10] -rw-r--r-- 2 boinc boinc    597960 Mar 11 15:06 input.tar.gz
[2026-03-11 16:56:10] -rw-r--r-- 2 boinc boinc     15845 Mar 11 15:06 start_atlas.sh
[2026-03-11 16:56:10] drwxrwx--x 2 boinc boinc      4096 Mar 11 15:06 shared
[2026-03-11 16:56:10] -rw-r--r-- 1 boinc boinc         0 Mar 11 15:06 boinc_setup_complete
[2026-03-11 16:56:10] -rw-r--r-- 1 boinc boinc      6369 Mar 11 15:06 init_data.xml
[2026-03-11 16:56:10] -rw-r--r-- 1 boinc boinc         0 Mar 11 15:06 boinc_lockfile
[2026-03-11 16:56:10] -rw-r--r-- 1 boinc boinc      2563 Mar 11 15:06 pandaJob.out
[2026-03-11 16:56:10] -rw------- 1 boinc boinc   1007015 Mar 11 15:06 agis_schedconf.cvmfs.json
[2026-03-11 16:56:10] -rw------- 1 boinc boinc   1511578 Mar 11 15:06 agis_ddmendpoints.agis.ALL.json
[2026-03-11 16:56:10] -rw------- 1 boinc boinc       420 Mar 11 15:06 workernode_map.json
[2026-03-11 16:56:10] drwx------ 5 boinc boinc      4096 Mar 11 15:06 pilot3
[2026-03-11 16:56:10] -rw------- 1 boinc boinc 293508741 Mar 11 16:55 HITS.48997968._001409.pool.root.1
[2026-03-11 16:56:10] -rw-r--r-- 1 boinc boinc       530 Mar 11 16:55 boinc_task_state.xml
[2026-03-11 16:56:10] -rw------- 1 boinc boinc      1019 Mar 11 16:55 memory_monitor_summary.json
[2026-03-11 16:56:10] -rw------- 1 boinc boinc    283493 Mar 11 16:55 log.48997968._001409.job.log.tgz.1
[2026-03-11 16:56:10] -rw------- 1 boinc boinc      6295 Mar 11 16:55 heartbeat.json
[2026-03-11 16:56:10] -rw------- 1 boinc boinc        95 Mar 11 16:55 pilot_heartbeat.json
[2026-03-11 16:56:10] -rw-r--r-- 1 boinc boinc        27 Mar 11 16:56 wrapper_checkpoint.txt
[2026-03-11 16:56:10] -rw-r--r-- 1 boinc boinc      8192 Mar 11 16:56 boinc_mmap_file
[2026-03-11 16:56:10] -rw------- 1 boinc boinc      4934 Mar 11 16:56 pilotlog.txt
[2026-03-11 16:56:10] -rw------- 1 boinc boinc    941034 Mar 11 16:56 log.48997968._001409.job.log.1
[2026-03-11 16:56:10] -rw------- 1 boinc boinc       357 Mar 11 16:56 output.list
[2026-03-11 16:56:10] -rw-r--r-- 1 boinc boinc       620 Mar 11 16:56 runtime_log
[2026-03-11 16:56:10] -rw------- 1 boinc boinc   1239040 Mar 11 16:56 result.tar.gz
[2026-03-11 16:56:10] -rw-r--r-- 1 boinc boinc      8896 Mar 11 16:56 runtime_log.err
[2026-03-11 16:56:10] -rw------- 1 boinc boinc       657 Mar 11 16:56 qkrMDm1vCK9n9Rq4apOajLDm4fhM0noT9bVooX4SDmQMdLDmS5CLEm.diag
[2026-03-11 16:56:10] -rw-r--r-- 1 boinc boinc     12055 Mar 11 16:56 stderr.txt
[2026-03-11 16:56:10] HITS file was successfully produced:
[2026-03-11 16:56:10] -rw------- 1 boinc boinc 293508741 Mar 11 16:55 shared/HITS.pool.root.1
[2026-03-11 16:56:10]  *** Contents of shared directory: ***
[2026-03-11 16:56:10] total 639136
[2026-03-11 16:56:10] -rw-r--r-- 2 boinc boinc 359096827 Mar 11 15:06 ATLAS.root_0
[2026-03-11 16:56:10] -rw-r--r-- 2 boinc boinc    597960 Mar 11 15:06 input.tar.gz
[2026-03-11 16:56:10] -rw-r--r-- 2 boinc boinc     15845 Mar 11 15:06 start_atlas.sh
[2026-03-11 16:56:10] -rw------- 1 boinc boinc 293508741 Mar 11 16:55 HITS.pool.root.1
[2026-03-11 16:56:10] -rw------- 1 boinc boinc   1239040 Mar 11 16:56 result.tar.gz
16:56:12 (3745846): run_atlas exited; CPU time 24902.041792
16:56:12 (3745846): called boinc_finish(0)

</stderr_txt>
]]>

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