Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
21:03:33 (3960484): wrapper (7.7.26015): starting
21:03:33 (3960484): wrapper: running run_atlas (--nthreads 12)
[2026-03-10 21:03:33] Arguments: --nthreads 12
[2026-03-10 21:03:33] Threads: 12
[2026-03-10 21:03:33] Checking for CVMFS
[2026-03-10 21:03:34] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-10 21:03:34] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-10 21:03:34] Running cvmfs_config stat atlas.cern.ch
[2026-03-10 21:03:34] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-10 21:03:34] 2.11.0.0 3089991 213 66992 157129 3 188 3639597 6144001 14717 130560 0 2173020 99.999 8330 571 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.248.156:3126 1
[2026-03-10 21:03:34] CVMFS is ok
[2026-03-10 21:03:34] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-10 21:03:34] Checking for apptainer binary...
[2026-03-10 21:03:34] apptainer is not installed, using version from CVMFS
[2026-03-10 21:03:34] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-10 21:03:34] radiat0r
[2026-03-10 21:03:34] apptainer works
[2026-03-10 21:03:34] Set ATHENA_PROC_NUMBER=12
[2026-03-10 21:03:34] Set ATHENA_CORE_NUMBER=12
[2026-03-10 21:03:34] Starting ATLAS job with PandaID=7036045456
[2026-03-10 21:03:34] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/15 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-10 22:08:08]  *** The last 200 lines of the pilot log: ***
[2026-03-10 22:08:08]  ddmendpoint=NDGF-T1_DATADISK
[2026-03-10 22:08:08]  ddmendpoint_alt=None
[2026-03-10 22:08:08]  direct_access_lan=False
[2026-03-10 22:08:08]  direct_access_wan=False
[2026-03-10 22:08:08]  domain=
[2026-03-10 22:08:08]  filesize=384951
[2026-03-10 22:08:08]  filetype=log
[2026-03-10 22:08:08]  guid=a9132016-0bb0-4521-a9c9-af82b2bbd94c
[2026-03-10 22:08:08]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-03-10 22:08:08]  is_altstaged=None
[2026-03-10 22:08:08]  is_tar=False
[2026-03-10 22:08:08]  lfn=log.48848086._000047.job.log.tgz.1
[2026-03-10 22:08:08]  mtime=0
[2026-03-10 22:08:08]  protocol_id=None
[2026-03-10 22:08:08]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-03-10 22:08:08]  replicas=None
[2026-03-10 22:08:08]  scope=mc23_13p6TeV
[2026-03-10 22:08:08]  status=None
[2026-03-10 22:08:08]  status_code=0
[2026-03-10 22:08:08]  storage_token=
[2026-03-10 22:08:08]  surl=/var/lib/boinc/slots/15/PanDA_Pilot-7036045456/log.48848086._000047.job.log.tgz.1
[2026-03-10 22:08:08]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/80/95/log.48848086._000047.job.log.tgz.1
[2026-03-10 22:08:08]  workdir=None
[2026-03-10 22:08:08] ]
[2026-03-10 22:08:08] 2026-03-10 22:07:14,816 | INFO     | transferring file log.48848086._000047.job.log.tgz.1 from /var/lib/boinc/slots/15/PanDA_Pilot-7036045456/log.48848086._000047.job.log.tgz.1 to /var/lib/boinc/slots
[2026-03-10 22:08:08] 2026-03-10 22:07:14,817 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/15/PanDA_Pilot-7036045456/log.48848086._000047.job.log.tgz.1 /var/lib/boinc/slots/15/log.48848086._000047.j
[2026-03-10 22:08:08] 2026-03-10 22:07:14,842 | INFO     | adding to output.list: log.48848086._000047.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/80/95/log.48848086._000047.job.log.tg
[2026-03-10 22:08:08] 2026-03-10 22:07:14,842 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-10 22:08:08] 2026-03-10 22:07:14,842 | INFO     | summary of transferred files:
[2026-03-10 22:08:08] 2026-03-10 22:07:14,842 | INFO     |  -- lfn=log.48848086._000047.job.log.tgz.1, status_code=0, status=transferred
[2026-03-10 22:08:08] 2026-03-10 22:07:14,843 | INFO     | stage-out finished correctly
[2026-03-10 22:08:08] 2026-03-10 22:07:14,895 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-10 22:08:08] 2026-03-10 22:07:16,288 | INFO     | job 7036045456 has state=finished
[2026-03-10 22:08:08] 2026-03-10 22:07:16,288 | INFO     | preparing for final server update for job 7036045456 in state='finished'
[2026-03-10 22:08:08] 2026-03-10 22:07:16,289 | INFO     | reading metadata from: /var/lib/boinc/slots/15/PanDA_Pilot-7036045456/jobReport.json
[2026-03-10 22:08:08] 2026-03-10 22:07:16,291 | INFO     | added worker_node to metadata from /var/lib/boinc/slots/15/workernode_map.json
[2026-03-10 22:08:08] 2026-03-10 22:07:16,292 | INFO     | this job has now completed (state=finished)
[2026-03-10 22:08:08] 2026-03-10 22:07:16,292 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-10 22:08:08] 2026-03-10 22:07:16,292 | INFO     | log transfer has been attempted: DONE
[2026-03-10 22:08:08] 2026-03-10 22:07:16,292 | INFO     | job 7036045456 has finished - writing final server update
[2026-03-10 22:08:08] 2026-03-10 22:07:16,293 | INFO     | total number of processed events: 400 (read)
[2026-03-10 22:08:08] 2026-03-10 22:07:16,369 | INFO     | using path: /var/lib/boinc/slots/15/PanDA_Pilot-7036045456/memory_monitor_summary.json (trf name=prmon)
[2026-03-10 22:08:08] 2026-03-10 22:07:16,369 | INFO     | extracted standard info from prmon json
[2026-03-10 22:08:08] 2026-03-10 22:07:16,369 | INFO     | extracted standard memory fields from prmon json
[2026-03-10 22:08:08] 2026-03-10 22:07:16,370 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-10 22:08:08] 2026-03-10 22:07:16,370 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-10 22:08:08] 2026-03-10 22:07:16,370 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-10 22:08:08] 2026-03-10 22:07:16,371 | INFO     | fitting pss+swap vs Time
[2026-03-10 22:08:08] 2026-03-10 22:07:16,371 | INFO     | sum of square deviations: 51573060.0
[2026-03-10 22:08:08] 2026-03-10 22:07:16,372 | INFO     | sum of deviations: 2774273594.9999995
[2026-03-10 22:08:08] 2026-03-10 22:07:16,372 | INFO     | mean x: 1773178615.0
[2026-03-10 22:08:08] 2026-03-10 22:07:16,372 | INFO     | mean y: 2659288.7636363637
[2026-03-10 22:08:08] 2026-03-10 22:07:16,372 | INFO     | intersect: -95382074733.47917
[2026-03-10 22:08:08] 2026-03-10 22:07:16,372 | INFO     | chi2: 0.030725757726153154
[2026-03-10 22:08:08] 2026-03-10 22:07:16,372 | INFO     | current memory leak: 53.79 B/s (using 55 data points, chi2=0.03)
[2026-03-10 22:08:08] 2026-03-10 22:07:16,372 | INFO     | could have reported an average CPU frequency of 2299 MHz (6 samples)
[2026-03-10 22:08:08] 2026-03-10 22:07:16,373 | INFO     | ..............................
[2026-03-10 22:08:08] 2026-03-10 22:07:16,373 | INFO     | . Timing measurements:
[2026-03-10 22:08:08] 2026-03-10 22:07:16,373 | INFO     | . get job = 0 s
[2026-03-10 22:08:08] 2026-03-10 22:07:16,373 | INFO     | . initial setup = 8 s
[2026-03-10 22:08:08] 2026-03-10 22:07:16,373 | INFO     | . payload setup = 8 s
[2026-03-10 22:08:08] 2026-03-10 22:07:16,373 | INFO     | . stage-in = 0 s
[2026-03-10 22:08:08] 2026-03-10 22:07:16,373 | INFO     | . payload execution = 3773 s
[2026-03-10 22:08:08] 2026-03-10 22:07:16,373 | INFO     | . stage-out = 0 s
[2026-03-10 22:08:08] 2026-03-10 22:07:16,373 | INFO     | . log creation = 0 s
[2026-03-10 22:08:08] 2026-03-10 22:07:16,373 | INFO     | ..............................
[2026-03-10 22:08:08] 2026-03-10 22:07:16,432 | INFO     | 
[2026-03-10 22:08:08] 2026-03-10 22:07:16,432 | INFO     | job summary report
[2026-03-10 22:08:08] 2026-03-10 22:07:16,432 | INFO     | --------------------------------------------------
[2026-03-10 22:08:08] 2026-03-10 22:07:16,433 | INFO     | PanDA job id: 7036045456
[2026-03-10 22:08:08] 2026-03-10 22:07:16,433 | INFO     | task id: 48848086
[2026-03-10 22:08:08] 2026-03-10 22:07:16,433 | INFO     | errors: (none)
[2026-03-10 22:08:08] 2026-03-10 22:07:16,433 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-10 22:08:08] 2026-03-10 22:07:16,433 | INFO     | pilot state: finished 
[2026-03-10 22:08:08] 2026-03-10 22:07:16,433 | INFO     | transexitcode: 0
[2026-03-10 22:08:08] 2026-03-10 22:07:16,433 | INFO     | exeerrorcode: 0
[2026-03-10 22:08:08] 2026-03-10 22:07:16,433 | INFO     | exeerrordiag: 
[2026-03-10 22:08:08] 2026-03-10 22:07:16,433 | INFO     | exitcode: 0
[2026-03-10 22:08:08] 2026-03-10 22:07:16,433 | INFO     | exitmsg: OK
[2026-03-10 22:08:08] 2026-03-10 22:07:16,434 | INFO     | cpuconsumptiontime: 40765 s
[2026-03-10 22:08:08] 2026-03-10 22:07:16,434 | INFO     | nevents: 400
[2026-03-10 22:08:08] 2026-03-10 22:07:16,434 | INFO     | neventsw: 0
[2026-03-10 22:08:08] 2026-03-10 22:07:16,434 | INFO     | pid: 3970813
[2026-03-10 22:08:08] 2026-03-10 22:07:16,434 | INFO     | pgrp: 3970813
[2026-03-10 22:08:08] 2026-03-10 22:07:16,434 | INFO     | corecount: 12
[2026-03-10 22:08:08] 2026-03-10 22:07:16,434 | INFO     | event service: False
[2026-03-10 22:08:08] 2026-03-10 22:07:16,434 | INFO     | sizes: {0: 2279866, 1: 2280327, 11: 2280327, 3786: 2306215, 3787: 2315271, 3789: 2315409}
[2026-03-10 22:08:08] 2026-03-10 22:07:16,434 | INFO     | --------------------------------------------------
[2026-03-10 22:08:08] 2026-03-10 22:07:16,434 | INFO     | 
[2026-03-10 22:08:08] 2026-03-10 22:07:16,435 | INFO     | executing command: ls -lF /var/lib/boinc/slots/15
[2026-03-10 22:08:08] 2026-03-10 22:07:16,469 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-10 22:08:08] 2026-03-10 22:07:16,469 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-10 22:08:08] 2026-03-10 22:07:16,469 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-10 22:08:08] 2026-03-10 22:07:16,469 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-10 22:08:08] 2026-03-10 22:07:16,470 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-10 22:08:08] 2026-03-10 22:07:16,470 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-10 22:08:08] 2026-03-10 22:07:16,470 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-10 22:08:08] 2026-03-10 22:07:16,470 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-10 22:08:08] 2026-03-10 22:07:16,470 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-10 22:08:08] 2026-03-10 22:07:16,470 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-10 22:08:08] 2026-03-10 22:07:16,470 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-10 22:08:08] 2026-03-10 22:07:16,470 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-10 22:08:08] 2026-03-10 22:07:16,470 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-10 22:08:08] 2026-03-10 22:07:16,470 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-10 22:08:08] 2026-03-10 22:07:16,470 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-10 22:08:08] 2026-03-10 22:07:16,470 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-10 22:08:08] 2026-03-10 22:07:16,471 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-10 22:08:08] 2026-03-10 22:07:16,471 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-10 22:08:08] 2026-03-10 22:07:16,471 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-10 22:08:08] 2026-03-10 22:07:16,471 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-10 22:08:08] 2026-03-10 22:07:16,471 | INFO     | job 7036045456 has completed (purged errors)
[2026-03-10 22:08:08] 2026-03-10 22:07:16,471 | INFO     | overall cleanup function is called
[2026-03-10 22:08:08] 2026-03-10 22:07:17,481 | INFO     | --- collectZombieJob: --- 10, [3970813]
[2026-03-10 22:08:08] 2026-03-10 22:07:17,481 | INFO     | zombie collector waiting for pid 3970813
[2026-03-10 22:08:08] 2026-03-10 22:07:17,481 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-10 22:08:08] 2026-03-10 22:07:17,481 | INFO     | collected zombie processes
[2026-03-10 22:08:08] 2026-03-10 22:07:17,481 | INFO     | will attempt to kill all subprocesses of pid=3970813
[2026-03-10 22:08:08] 2026-03-10 22:07:17,856 | INFO     | process IDs to be killed: [3970813] (in reverse order)
[2026-03-10 22:08:08] 2026-03-10 22:07:18,006 | WARNING  | found no corresponding commands to process id(s)
[2026-03-10 22:08:08] 2026-03-10 22:07:18,006 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-10 22:08:08] 2026-03-10 22:07:18,028 | INFO     | did not find any defunct processes belonging to 3970813
[2026-03-10 22:08:08] 2026-03-10 22:07:18,046 | INFO     | did not find any defunct processes belonging to 3970813
[2026-03-10 22:08:08] 2026-03-10 22:07:18,047 | INFO     | ready for new job
[2026-03-10 22:08:08] 2026-03-10 22:07:18,047 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-10 22:08:08] 2026-03-10 22:07:18,048 | INFO     | **************************************
[2026-03-10 22:08:08] 2026-03-10 22:07:18,048 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-10 22:08:08] 2026-03-10 22:07:18,049 | INFO     | **************************************
[2026-03-10 22:08:08] 2026-03-10 22:07:18,049 | INFO     | 
[2026-03-10 22:08:08] 2026-03-10 22:07:18,083 | INFO     | architecture information:
[2026-03-10 22:08:08] 2026-03-10 22:07:18,084 | INFO     | executing command: cat /etc/os-release
[2026-03-10 22:08:08] 2026-03-10 22:07:18,106 | INFO     | cat /etc/os-release:
[2026-03-10 22:08:08] NAME="CentOS Linux"
[2026-03-10 22:08:08] VERSION="7 (Core)"
[2026-03-10 22:08:08] ID="centos"
[2026-03-10 22:08:08] ID_LIKE="rhel fedora"
[2026-03-10 22:08:08] VERSION_ID="7"
[2026-03-10 22:08:08] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-10 22:08:08] ANSI_COLOR="0;31"
[2026-03-10 22:08:08] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-10 22:08:08] HOME_URL="https://www.centos.org/"
[2026-03-10 22:08:08] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-10 22:08:08] 
[2026-03-10 22:08:08] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-10 22:08:08] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-10 22:08:08] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-10 22:08:08] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-10 22:08:08] 
[2026-03-10 22:08:08] 2026-03-10 22:07:18,106 | INFO     | **************************************
[2026-03-10 22:08:08] 2026-03-10 22:07:18,609 | INFO     | executing command: df -mP /var/lib/boinc/slots/15
[2026-03-10 22:08:08] 2026-03-10 22:07:18,632 | INFO     | sufficient remaining disk space (1722476920832 B)
[2026-03-10 22:08:08] 2026-03-10 22:07:18,633 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-10 22:08:08] 2026-03-10 22:07:18,633 | INFO     | current server update state: UPDATING_FINAL
[2026-03-10 22:08:08] 2026-03-10 22:07:18,633 | INFO     | update_server=False
[2026-03-10 22:08:08] 2026-03-10 22:07:18,633 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-10 22:08:08] 2026-03-10 22:07:18,633 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-10 22:08:08] 2026-03-10 22:07:18,634 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-10 22:08:08] 2026-03-10 22:07:18,634 | INFO     | aborting loop
[2026-03-10 22:08:08] 2026-03-10 22:07:18,912 | INFO     | all payload control threads have been joined
[2026-03-10 22:08:08] 2026-03-10 22:07:19,464 | INFO     | all data control threads have been joined
[2026-03-10 22:08:08] 2026-03-10 22:07:19,639 | INFO     | [job] retrieve thread has finished
[2026-03-10 22:08:08] 2026-03-10 22:07:19,640 | INFO     | [job] job monitor thread has finished
[2026-03-10 22:08:08] 2026-03-10 22:07:19,917 | INFO     | [payload] control thread has finished
[2026-03-10 22:08:08] 2026-03-10 22:07:19,926 | INFO     | [payload] failed_post thread has finished
[2026-03-10 22:08:08] 2026-03-10 22:07:20,002 | INFO     | [job] create_data_payload thread has finished
[2026-03-10 22:08:08] 2026-03-10 22:07:20,068 | INFO     | [payload] validate_pre thread has finished
[2026-03-10 22:08:08] 2026-03-10 22:07:20,112 | INFO     | all job control threads have been joined
[2026-03-10 22:08:08] 2026-03-10 22:07:20,412 | INFO     | [payload] execute_payloads thread has finished
[2026-03-10 22:08:08] 2026-03-10 22:07:20,442 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-10 22:08:08] 2026-03-10 22:07:20,470 | INFO     | [data] control thread has finished
[2026-03-10 22:08:08] 2026-03-10 22:07:20,530 | INFO     | [data] copytool_in thread has finished
[2026-03-10 22:08:08] 2026-03-10 22:07:20,639 | INFO     | [data] copytool_out thread has finished
[2026-03-10 22:08:08] 2026-03-10 22:07:20,907 | INFO     | [payload] validate_post thread has finished
[2026-03-10 22:08:08] 2026-03-10 22:07:20,997 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-10 22:08:08] 2026-03-10 22:07:21,117 | INFO     | [job] validate thread has finished
[2026-03-10 22:08:08] 2026-03-10 22:07:21,118 | INFO     | [job] control thread has finished
[2026-03-10 22:08:08] 2026-03-10 22:07:21,443 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-10 22:08:08] 2026-03-10 22:07:22,448 | INFO     | [job] queue monitor thread has finished
[2026-03-10 22:08:08] 2026-03-10 22:07:25,003 | INFO     | [data] queue_monitor thread has finished
[2026-03-10 22:08:08] 2026-03-10 22:07:48,102 | INFO     | PID=3965184 has CPU usage=6.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-10 22:08:08] 2026-03-10 22:07:48,102 | INFO     | found 0 job(s) in 20 queues
[2026-03-10 22:08:08] 2026-03-10 22:07:48,102 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-10 22:08:08] 2026-03-10 22:07:48,102 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-10 22:08:08] 2026-03-10 22:08:01,973 | INFO     | [monitor] cgroup control has ended
[2026-03-10 22:08:08] 2026-03-10 22:08:03,216 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140047283545920)>', '<ExcThread(monitor, started 140046837462784)>']
[2026-03-10 22:08:08] 2026-03-10 22:08:04,183 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-10 22:08:08] 2026-03-10 22:08:04,184 | INFO     | [monitor] control thread has ended
[2026-03-10 22:08:08] 2026-03-10 22:08:08,241 | INFO     | all workflow threads have been joined
[2026-03-10 22:08:08] 2026-03-10 22:08:08,242 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-10 22:08:08] 2026-03-10 22:08:08,242 | INFO     | traces error code: 0
[2026-03-10 22:08:08] 2026-03-10 22:08:08,242 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-10 22:08:08] 2026-03-10 22:08:08,355 [wrapper] ==== pilot stdout END ====
[2026-03-10 22:08:08] 2026-03-10 22:08:08,359 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-10 22:08:08] 2026-03-10 22:08:08,364 [wrapper] pilotpid: 3965184
[2026-03-10 22:08:08] 2026-03-10 22:08:08,368 [wrapper] Pilot exit status: 0
[2026-03-10 22:08:08] 2026-03-10 22:08:08,383 [wrapper] pandaids: 7036045456
[2026-03-10 22:08:08] 2026-03-10 22:08:08,496 [wrapper] cleanup supervisor_pilot 3995100 3965185
[2026-03-10 22:08:08] 2026-03-10 22:08:08,501 [wrapper] Test setup, not cleaning
[2026-03-10 22:08:08] 2026-03-10 22:08:08,505 [wrapper] apfmon messages muted
[2026-03-10 22:08:08] 2026-03-10 22:08:08,509 [wrapper] ==== wrapper stdout END ====
[2026-03-10 22:08:08] 2026-03-10 22:08:08,513 [wrapper] ==== wrapper stderr END ====
[2026-03-10 22:08:08]  *** Error codes and diagnostics ***
[2026-03-10 22:08:08]     "exeErrorCode": 0,
[2026-03-10 22:08:08]     "exeErrorDiag": "",
[2026-03-10 22:08:08]     "pilotErrorCode": 0,
[2026-03-10 22:08:08]     "pilotErrorDiag": "",
[2026-03-10 22:08:08]  *** Listing of results directory ***
[2026-03-10 22:08:08] total 429980
[2026-03-10 22:08:08] -rw-r--r-- 1 boinc boinc    584627 Mar  2 17:50 pilot3.tar.gz
[2026-03-10 22:08:08] -rwx------ 1 boinc boinc     36322 Mar  2 17:51 runpilot2-wrapper.sh
[2026-03-10 22:08:08] -rw-r--r-- 1 boinc boinc      5111 Mar  2 17:51 queuedata.json
[2026-03-10 22:08:08] -rw-r--r-- 1 boinc boinc       100 Mar 10 21:03 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-10 22:08:08] -rwxr-xr-x 1 boinc boinc      7986 Mar 10 21:03 run_atlas
[2026-03-10 22:08:08] -rw-r--r-- 1 boinc boinc       105 Mar 10 21:03 job.xml
[2026-03-10 22:08:08] -rw-r--r-- 2 boinc boinc 228094099 Mar 10 21:03 EVNT.48455141._000002.pool.root.1
[2026-03-10 22:08:08] -rw-r--r-- 2 boinc boinc     15845 Mar 10 21:03 start_atlas.sh
[2026-03-10 22:08:08] drwxrwx--x 2 boinc boinc      4096 Mar 10 21:03 shared
[2026-03-10 22:08:08] -rw-r--r-- 2 boinc boinc    597962 Mar 10 21:03 input.tar.gz
[2026-03-10 22:08:08] -rw-r--r-- 1 boinc boinc      9415 Mar 10 21:03 init_data.xml
[2026-03-10 22:08:08] -rw-r--r-- 1 boinc boinc         0 Mar 10 21:03 boinc_setup_complete
[2026-03-10 22:08:08] -rw-r--r-- 1 boinc boinc         0 Mar 10 21:03 boinc_lockfile
[2026-03-10 22:08:08] -rw-r--r-- 1 boinc boinc      2611 Mar 10 21:03 pandaJob.out
[2026-03-10 22:08:08] -rw------- 1 boinc boinc   1006644 Mar 10 21:03 agis_schedconf.cvmfs.json
[2026-03-10 22:08:08] -rw------- 1 boinc boinc   1511578 Mar 10 21:03 agis_ddmendpoints.agis.ALL.json
[2026-03-10 22:08:08] -rw------- 1 boinc boinc       416 Mar 10 21:03 workernode_map.json
[2026-03-10 22:08:08] drwx------ 5 boinc boinc      4096 Mar 10 21:03 pilot3
[2026-03-10 22:08:08] -rw------- 1 boinc boinc 206374528 Mar 10 22:06 HITS.48848086._000047.pool.root.1
[2026-03-10 22:08:08] -rw-r--r-- 1 boinc boinc       529 Mar 10 22:06 boinc_task_state.xml
[2026-03-10 22:08:08] -rw------- 1 boinc boinc        95 Mar 10 22:07 pilot_heartbeat.json
[2026-03-10 22:08:08] -rw------- 1 boinc boinc      1023 Mar 10 22:07 memory_monitor_summary.json
[2026-03-10 22:08:08] -rw------- 1 boinc boinc    384951 Mar 10 22:07 log.48848086._000047.job.log.tgz.1
[2026-03-10 22:08:08] -rw------- 1 boinc boinc      6269 Mar 10 22:07 heartbeat.json
[2026-03-10 22:08:08] -rw-r--r-- 1 boinc boinc      8192 Mar 10 22:08 boinc_mmap_file
[2026-03-10 22:08:08] -rw-r--r-- 1 boinc boinc        27 Mar 10 22:08 wrapper_checkpoint.txt
[2026-03-10 22:08:08] -rw------- 1 boinc boinc      4747 Mar 10 22:08 pilotlog.txt
[2026-03-10 22:08:08] -rw------- 1 boinc boinc    557065 Mar 10 22:08 log.48848086._000047.job.log.1
[2026-03-10 22:08:08] -rw------- 1 boinc boinc       357 Mar 10 22:08 output.list
[2026-03-10 22:08:08] -rw-r--r-- 1 boinc boinc       620 Mar 10 22:08 runtime_log
[2026-03-10 22:08:08] -rw------- 1 boinc boinc    962560 Mar 10 22:08 result.tar.gz
[2026-03-10 22:08:08] -rw-r--r-- 1 boinc boinc      8787 Mar 10 22:08 runtime_log.err
[2026-03-10 22:08:08] -rw------- 1 boinc boinc       643 Mar 10 22:08 liiKDmYbMH9n9Rq4apOajLDm4fhM0noT9bVooX4SDmz5BLDmHpVA1m.diag
[2026-03-10 22:08:08] -rw-r--r-- 1 boinc boinc     20551 Mar 10 22:08 stderr.txt
[2026-03-10 22:08:08] HITS file was successfully produced:
[2026-03-10 22:08:08] -rw------- 1 boinc boinc 206374528 Mar 10 22:06 shared/HITS.pool.root.1
[2026-03-10 22:08:08]  *** Contents of shared directory: ***
[2026-03-10 22:08:08] total 425840
[2026-03-10 22:08:08] -rw-r--r-- 2 boinc boinc 228094099 Mar 10 21:03 ATLAS.root_0
[2026-03-10 22:08:08] -rw-r--r-- 2 boinc boinc     15845 Mar 10 21:03 start_atlas.sh
[2026-03-10 22:08:08] -rw-r--r-- 2 boinc boinc    597962 Mar 10 21:03 input.tar.gz
[2026-03-10 22:08:08] -rw------- 1 boinc boinc 206374528 Mar 10 22:06 HITS.pool.root.1
[2026-03-10 22:08:08] -rw------- 1 boinc boinc    962560 Mar 10 22:08 result.tar.gz
22:08:10 (3960484): run_atlas exited; CPU time 40899.972418
22:08:10 (3960484): called boinc_finish(0)

</stderr_txt>
]]>

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