Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
09:41:07 (2608873): wrapper (7.7.26015): starting
09:41:07 (2608873): wrapper: running run_atlas (--nthreads 3)
[2026-03-11 09:41:07] Arguments: --nthreads 3
[2026-03-11 09:41:07] Threads: 3
[2026-03-11 09:41:07] Checking for CVMFS
[2026-03-11 09:41:07] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-11 09:41:08] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-11 09:41:08] Running cvmfs_config stat atlas.cern.ch
[2026-03-11 09:41:08] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-11 09:41:08] 2.9.2.0 2903 18227 89772 157148 2 50 29218517 36864001 0 130560 0 7316881 99.981 819017 6440 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-11 09:41:08] CVMFS is ok
[2026-03-11 09:41:08] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-11 09:41:08] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-11 09:41:08] Further information can be found at the LHC@home message board.
[2026-03-11 09:41:08] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-11 09:41:08] Checking for apptainer binary...
[2026-03-11 09:41:08] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-11 09:41:08] Running /usr/bin/apptainer --version
[2026-03-11 09:41:08] apptainer version 1.4.1-1.1
[2026-03-11 09:41:08] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-11 09:41:08] belleA253
[2026-03-11 09:41:08] apptainer works
[2026-03-11 09:41:08] Set ATHENA_PROC_NUMBER=3
[2026-03-11 09:41:08] Set ATHENA_CORE_NUMBER=3
[2026-03-11 09:41:08] Starting ATLAS job with PandaID=7036015319
[2026-03-11 09:41:08] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-11 12:57:39]  *** The last 200 lines of the pilot log: ***
[2026-03-11 12:57:39] 2026-03-11 11:57:04,919 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-11 12:57:39] 2026-03-11 11:57:04,919 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-11 12:57:39] 2026-03-11 11:57:04,919 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-11 12:57:39] 2026-03-11 11:57:04,919 | INFO     | job 7036015319 has completed (purged errors)
[2026-03-11 12:57:39] 2026-03-11 11:57:04,919 | INFO     | overall cleanup function is called
[2026-03-11 12:57:39] 2026-03-11 11:57:05,926 | INFO     | --- collectZombieJob: --- 10, [2617340]
[2026-03-11 12:57:39] 2026-03-11 11:57:05,926 | INFO     | zombie collector waiting for pid 2617340
[2026-03-11 12:57:39] 2026-03-11 11:57:05,926 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-11 12:57:39] 2026-03-11 11:57:05,926 | INFO     | collected zombie processes
[2026-03-11 12:57:39] 2026-03-11 11:57:05,926 | INFO     | will attempt to kill all subprocesses of pid=2617340
[2026-03-11 12:57:39] 2026-03-11 11:57:05,967 | INFO     | process IDs to be killed: [2617340] (in reverse order)
[2026-03-11 12:57:39] 2026-03-11 11:57:05,992 | WARNING  | found no corresponding commands to process id(s)
[2026-03-11 12:57:39] 2026-03-11 11:57:05,992 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-11 12:57:39] 2026-03-11 11:57:05,994 | INFO     | did not find any defunct processes belonging to 2617340
[2026-03-11 12:57:39] 2026-03-11 11:57:05,995 | INFO     | did not find any defunct processes belonging to 2617340
[2026-03-11 12:57:39] 2026-03-11 11:57:05,995 | INFO     | ready for new job
[2026-03-11 12:57:39] 2026-03-11 11:57:05,995 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-11 12:57:39] 2026-03-11 11:57:05,995 | INFO     | **************************************
[2026-03-11 12:57:39] 2026-03-11 11:57:05,996 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-11 12:57:39] 2026-03-11 11:57:05,996 | INFO     | **************************************
[2026-03-11 12:57:39] 2026-03-11 11:57:05,996 | INFO     | 
[2026-03-11 12:57:39] 2026-03-11 11:57:05,996 | INFO     | architecture information:
[2026-03-11 12:57:39] 2026-03-11 11:57:05,996 | INFO     | executing command: cat /etc/os-release
[2026-03-11 12:57:39] 2026-03-11 11:57:06,006 | INFO     | cat /etc/os-release:
[2026-03-11 12:57:39] NAME="CentOS Linux"
[2026-03-11 12:57:39] VERSION="7 (Core)"
[2026-03-11 12:57:39] ID="centos"
[2026-03-11 12:57:39] ID_LIKE="rhel fedora"
[2026-03-11 12:57:39] VERSION_ID="7"
[2026-03-11 12:57:39] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-11 12:57:39] ANSI_COLOR="0;31"
[2026-03-11 12:57:39] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-11 12:57:39] HOME_URL="https://www.centos.org/"
[2026-03-11 12:57:39] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-11 12:57:39] 
[2026-03-11 12:57:39] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-11 12:57:39] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-11 12:57:39] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-11 12:57:39] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-11 12:57:39] 
[2026-03-11 12:57:39] 2026-03-11 11:57:06,006 | INFO     | **************************************
[2026-03-11 12:57:39] 2026-03-11 11:57:06,509 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-11 12:57:39] 2026-03-11 11:57:06,523 | INFO     | sufficient remaining disk space (375309467648 B)
[2026-03-11 12:57:39] 2026-03-11 11:57:06,523 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-11 12:57:39] 2026-03-11 11:57:06,523 | INFO     | current server update state: UPDATING_FINAL
[2026-03-11 12:57:39] 2026-03-11 11:57:06,523 | INFO     | update_server=False
[2026-03-11 12:57:39] 2026-03-11 11:57:06,523 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-11 12:57:39] 2026-03-11 11:57:06,523 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-11 12:57:39] 2026-03-11 11:57:06,524 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-03-11 12:57:39] 2026-03-11 11:57:06,524 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-11 12:57:39] 2026-03-11 11:57:06,524 | INFO     | found 0 job(s) in 20 queues
[2026-03-11 12:57:39] 2026-03-11 11:57:06,524 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-11 12:57:39] 2026-03-11 11:57:06,524 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-11 12:57:39] 2026-03-11 11:57:06,710 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-11 12:57:39] 2026-03-11 11:57:06,711 | INFO     | aborting loop
[2026-03-11 12:57:39] 2026-03-11 11:57:06,847 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-11 12:57:39] 2026-03-11 11:57:06,989 | INFO     | all data control threads have been joined
[2026-03-11 12:57:39] 2026-03-11 11:57:07,485 | INFO     | all payload control threads have been joined
[2026-03-11 12:57:39] 2026-03-11 11:57:07,529 | INFO     | [job] retrieve thread has finished
[2026-03-11 12:57:39] 2026-03-11 11:57:07,529 | INFO     | [job] queue monitor thread has finished
[2026-03-11 12:57:39] 2026-03-11 11:57:07,538 | INFO     | [job] validate thread has finished
[2026-03-11 12:57:39] 2026-03-11 11:57:07,539 | INFO     | [job] create_data_payload thread has finished
[2026-03-11 12:57:39] 2026-03-11 11:57:07,539 | INFO     | [payload] execute_payloads thread has finished
[2026-03-11 12:57:39] 2026-03-11 11:57:07,549 | INFO     | [payload] validate_pre thread has finished
[2026-03-11 12:57:39] 2026-03-11 11:57:07,555 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-11 12:57:39] 2026-03-11 11:57:07,706 | INFO     | [data] copytool_in thread has finished
[2026-03-11 12:57:39] 2026-03-11 11:57:07,716 | INFO     | [job] job monitor thread has finished
[2026-03-11 12:57:39] 2026-03-11 11:57:07,970 | INFO     | [payload] validate_post thread has finished
[2026-03-11 12:57:39] 2026-03-11 11:57:07,994 | INFO     | [data] control thread has finished
[2026-03-11 12:57:39] 2026-03-11 11:57:08,126 | INFO     | all job control threads have been joined
[2026-03-11 12:57:39] 2026-03-11 11:57:08,491 | INFO     | [payload] control thread has finished
[2026-03-11 12:57:39] 2026-03-11 11:57:08,817 | INFO     | [payload] failed_post thread has finished
[2026-03-11 12:57:39] 2026-03-11 11:57:08,853 | INFO     | [data] copytool_out thread has finished
[2026-03-11 12:57:39] 2026-03-11 11:57:09,132 | INFO     | [job] control thread has finished
[2026-03-11 12:57:39] 2026-03-11 11:57:10,530 | INFO     | [data] queue_monitor thread has finished
[2026-03-11 12:57:39] 2026-03-11 11:57:32,798 | INFO     | [monitor] cgroup control has ended
[2026-03-11 12:57:39] 2026-03-11 11:57:34,615 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140613763389248)>', '<ExcThread(monitor, started 140613489280768)>']
[2026-03-11 12:57:39] 2026-03-11 11:57:34,668 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-11 12:57:39] 2026-03-11 11:57:34,669 | INFO     | [monitor] control thread has ended
[2026-03-11 12:57:39] 2026-03-11 11:57:39,641 | INFO     | all workflow threads have been joined
[2026-03-11 12:57:39] 2026-03-11 11:57:39,641 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-11 12:57:39] 2026-03-11 11:57:39,642 | INFO     | traces error code: 0
[2026-03-11 12:57:39] 2026-03-11 11:57:39,642 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-11 12:57:39] 2026-03-11 11:57:39,692 [wrapper] ==== pilot stdout END ====
[2026-03-11 12:57:39] 2026-03-11 11:57:39,695 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-11 12:57:39] 2026-03-11 11:57:39,697 [wrapper] pilotpid: 2612916
[2026-03-11 12:57:39] 2026-03-11 11:57:39,700 [wrapper] Pilot exit status: 0
[2026-03-11 12:57:39] 2026-03-11 11:57:39,708 [wrapper] pandaids: 7036015319
[2026-03-11 12:57:39] 2026-03-11 11:57:39,724 [wrapper] cleanup supervisor_pilot 2624022 2612917
[2026-03-11 12:57:39] 2026-03-11 11:57:39,727 [wrapper] Test setup, not cleaning
[2026-03-11 12:57:39] 2026-03-11 11:57:39,729 [wrapper] apfmon messages muted
[2026-03-11 12:57:39] 2026-03-11 11:57:39,732 [wrapper] ==== wrapper stdout END ====
[2026-03-11 12:57:39] 2026-03-11 11:57:39,734 [wrapper] ==== wrapper stderr END ====
[2026-03-11 12:57:39]  *** Error codes and diagnostics ***
[2026-03-11 12:57:39]     "exeErrorCode": 0,
[2026-03-11 12:57:39]     "exeErrorDiag": "",
[2026-03-11 12:57:39]     "pilotErrorCode": 0,
[2026-03-11 12:57:39]     "pilotErrorDiag": "",
[2026-03-11 12:57:39]  *** Listing of results directory ***
[2026-03-11 12:57:39] total 461596
[2026-03-11 12:57:39] -rw-r--r-- 1 boinc boinc    584627 Mar  2 15:48 pilot3.tar.gz
[2026-03-11 12:57:39] -rwx------ 1 boinc boinc     36322 Mar  2 15:51 runpilot2-wrapper.sh
[2026-03-11 12:57:39] -rw-r--r-- 1 boinc boinc      5111 Mar  2 15:52 queuedata.json
[2026-03-11 12:57:39] -rw-r--r-- 1 boinc boinc       100 Mar 11 09:41 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-11 12:57:39] -rwxr-xr-x 1 boinc boinc      7986 Mar 11 09:41 run_atlas
[2026-03-11 12:57:39] -rw-r--r-- 1 boinc boinc       105 Mar 11 09:41 job.xml
[2026-03-11 12:57:39] -rw-r--r-- 2 boinc boinc 229315514 Mar 11 09:41 EVNT.48454686._000001.pool.root.1
[2026-03-11 12:57:39] -rw-r--r-- 2 boinc boinc    597952 Mar 11 09:41 input.tar.gz
[2026-03-11 12:57:39] -rw-r--r-- 2 boinc boinc     15845 Mar 11 09:41 start_atlas.sh
[2026-03-11 12:57:39] drwxrwx--x 2 boinc boinc      4096 Mar 11 09:41 shared
[2026-03-11 12:57:39] -rw-r--r-- 1 boinc boinc         0 Mar 11 09:41 boinc_setup_complete
[2026-03-11 12:57:39] -rw-r--r-- 1 boinc boinc      6447 Mar 11 09:41 init_data.xml
[2026-03-11 12:57:39] -rw-r--r-- 1 boinc boinc         0 Mar 11 09:41 boinc_lockfile
[2026-03-11 12:57:39] -rw-r--r-- 1 boinc boinc      2623 Mar 11 09:41 pandaJob.out
[2026-03-11 12:57:39] -rw------- 1 boinc boinc   1006970 Mar 11 09:41 agis_schedconf.cvmfs.json
[2026-03-11 12:57:39] -rw------- 1 boinc boinc       426 Mar 11 09:41 workernode_map.json
[2026-03-11 12:57:39] drwx------ 5 boinc boinc      4096 Mar 11 09:41 pilot3
[2026-03-11 12:57:39] -rw------- 1 boinc boinc        95 Mar 11 12:56 pilot_heartbeat.json
[2026-03-11 12:57:39] -rw------- 1 boinc boinc 235384398 Mar 11 12:56 HITS.48844933._000024.pool.root.1
[2026-03-11 12:57:39] -rw-r--r-- 1 boinc boinc       530 Mar 11 12:56 boinc_task_state.xml
[2026-03-11 12:57:39] -rw------- 1 boinc boinc      1016 Mar 11 12:56 memory_monitor_summary.json
[2026-03-11 12:57:39] -rw------- 1 boinc boinc   1511578 Mar 11 12:57 agis_ddmendpoints.agis.ALL.json
[2026-03-11 12:57:39] -rw------- 1 boinc boinc    363025 Mar 11 12:57 log.48844933._000024.job.log.tgz.1
[2026-03-11 12:57:39] -rw------- 1 boinc boinc      6299 Mar 11 12:57 heartbeat.json
[2026-03-11 12:57:39] -rw-r--r-- 1 boinc boinc        28 Mar 11 12:57 wrapper_checkpoint.txt
[2026-03-11 12:57:39] -rw-r--r-- 1 boinc boinc      8192 Mar 11 12:57 boinc_mmap_file
[2026-03-11 12:57:39] -rw------- 1 boinc boinc      4552 Mar 11 12:57 pilotlog.txt
[2026-03-11 12:57:39] -rw------- 1 boinc boinc   1662441 Mar 11 12:57 log.48844933._000024.job.log.1
[2026-03-11 12:57:39] -rw------- 1 boinc boinc       357 Mar 11 12:57 output.list
[2026-03-11 12:57:39] -rw-r--r-- 1 boinc boinc       620 Mar 11 12:57 runtime_log
[2026-03-11 12:57:39] -rw------- 1 boinc boinc   2048000 Mar 11 12:57 result.tar.gz
[2026-03-11 12:57:39] -rw-r--r-- 1 boinc boinc      8912 Mar 11 12:57 runtime_log.err
[2026-03-11 12:57:39] -rw------- 1 boinc boinc       663 Mar 11 12:57 UaLODmdnJH9n9Rq4apOajLDm4fhM0noT9bVooX4SDmohBLDmpQSrMo.diag
[2026-03-11 12:57:39] -rw-r--r-- 1 boinc boinc     11030 Mar 11 12:57 stderr.txt
[2026-03-11 12:57:39] HITS file was successfully produced:
[2026-03-11 12:57:39] -rw------- 1 boinc boinc 235384398 Mar 11 12:56 shared/HITS.pool.root.1
[2026-03-11 12:57:39]  *** Contents of shared directory: ***
[2026-03-11 12:57:39] total 456416
[2026-03-11 12:57:39] -rw-r--r-- 2 boinc boinc 229315514 Mar 11 09:41 ATLAS.root_0
[2026-03-11 12:57:39] -rw-r--r-- 2 boinc boinc    597952 Mar 11 09:41 input.tar.gz
[2026-03-11 12:57:39] -rw-r--r-- 2 boinc boinc     15845 Mar 11 09:41 start_atlas.sh
[2026-03-11 12:57:39] -rw------- 1 boinc boinc 235384398 Mar 11 12:56 HITS.pool.root.1
[2026-03-11 12:57:39] -rw------- 1 boinc boinc   2048000 Mar 11 12:57 result.tar.gz
12:57:41 (2608873): run_atlas exited; CPU time 34448.692863
12:57:41 (2608873): called boinc_finish(0)

</stderr_txt>
]]>

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