Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
13:44:29 (3928983): wrapper (7.7.26015): starting
13:44:29 (3928983): wrapper: running run_atlas (--nthreads 11)
[2026-03-10 13:44:29] Arguments: --nthreads 11
[2026-03-10 13:44:29] Threads: 11
[2026-03-10 13:44:29] Checking for CVMFS
[2026-03-10 13:44:30] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-10 13:44:30] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-10 13:44:30] Running cvmfs_config stat atlas.cern.ch
[2026-03-10 13:44:31] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-10 13:44:31] 2.13.3.0 4156 83217 727804 157125 2 662 23978868 32935936 61999 16776704 0 656923672 99.751 424273198 28482 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-03-10 13:44:31] CVMFS is ok
[2026-03-10 13:44:31] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-10 13:44:31] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-10 13:44:31] Further information can be found at the LHC@home message board.
[2026-03-10 13:44:31] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-10 13:44:31] Checking for apptainer binary...
[2026-03-10 13:44:31] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-10 13:44:31] Running /usr/bin/apptainer --version
[2026-03-10 13:44:31] apptainer version 1.4.5-2.el9
[2026-03-10 13:44:31] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-10 13:44:32] lc-10-10.aglt2.org
[2026-03-10 13:44:32] apptainer works
[2026-03-10 13:44:32] Set ATHENA_PROC_NUMBER=11
[2026-03-10 13:44:32] Set ATHENA_CORE_NUMBER=11
[2026-03-10 13:44:32] Starting ATLAS job with PandaID=7035989493
[2026-03-10 13:44:32] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-11 06:55:51]  *** The last 200 lines of the pilot log: ***
[2026-03-11 06:55:51] 2026-03-11 10:54:56,097 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-7035989493/memory_monitor_summary.json (trf name=prmon)
[2026-03-11 06:55:51] 2026-03-11 10:54:56,098 | INFO     | extracted standard info from prmon json
[2026-03-11 06:55:51] 2026-03-11 10:54:56,098 | INFO     | extracted standard memory fields from prmon json
[2026-03-11 06:55:51] 2026-03-11 10:54:56,098 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-11 06:55:51] 2026-03-11 10:54:56,098 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-11 06:55:51] 2026-03-11 10:54:56,098 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-11 06:55:51] 2026-03-11 10:54:56,223 | INFO     | fitting pss+swap vs Time
[2026-03-11 06:55:51] 2026-03-11 10:54:56,225 | INFO     | sum of square deviations: 319482882045.1572
[2026-03-11 06:55:51] 2026-03-11 10:54:56,331 | INFO     | sum of deviations: 638649978374.5975
[2026-03-11 06:55:51] 2026-03-11 10:54:56,332 | INFO     | mean x: 1773195651.7118812
[2026-03-11 06:55:51] 2026-03-11 10:54:56,332 | INFO     | mean y: 2631134.716831683
[2026-03-11 06:55:51] 2026-03-11 10:54:56,332 | INFO     | intersect: -3542007493.0881386
[2026-03-11 06:55:51] 2026-03-11 10:54:56,337 | INFO     | chi2: 5.943081995378165
[2026-03-11 06:55:51] 2026-03-11 10:54:56,339 | INFO     | sum of square deviations: 314761658792.4316
[2026-03-11 06:55:51] 2026-03-11 10:54:56,390 | INFO     | sum of deviations: 849102923941.5598
[2026-03-11 06:55:51] 2026-03-11 10:54:56,391 | INFO     | mean x: 1773195499.2129352
[2026-03-11 06:55:51] 2026-03-11 10:54:56,391 | INFO     | mean y: 2637918.8338308455
[2026-03-11 06:55:51] 2026-03-11 10:54:56,391 | INFO     | intersect: -4780744812.334823
[2026-03-11 06:55:51] 2026-03-11 10:54:56,397 | INFO     | chi2: 3.6284534506727497
[2026-03-11 06:55:51] 2026-03-11 10:54:56,397 | INFO     | current chi2=3.6284534506727497 (change=38.94660289905916 %)
[2026-03-11 06:55:51] 2026-03-11 10:54:56,399 | INFO     | sum of square deviations: 310087180602.20386
[2026-03-11 06:55:51] 2026-03-11 10:54:56,417 | INFO     | monitor loop #2770: job 0:7035989493 is in state 'finished'
[2026-03-11 06:55:51] 2026-03-11 10:54:56,417 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-03-11 06:55:51] 2026-03-11 10:54:56,453 | INFO     | sum of deviations: 842709790009.5045
[2026-03-11 06:55:51] 2026-03-11 10:54:56,454 | INFO     | mean x: 1773195346.714
[2026-03-11 06:55:51] 2026-03-11 10:54:56,454 | INFO     | mean y: 2637710.264
[2026-03-11 06:55:51] 2026-03-11 10:54:56,454 | INFO     | intersect: -4816294421.574556
[2026-03-11 06:55:51] 2026-03-11 10:54:56,461 | INFO     | chi2: 3.6282692667854572
[2026-03-11 06:55:51] 2026-03-11 10:54:56,462 | INFO     | current chi2=3.6282692667854572 (change=0.005076098943981676 %)
[2026-03-11 06:55:51] 2026-03-11 10:54:56,462 | INFO     | right removable region: 999
[2026-03-11 06:55:51] 2026-03-11 10:54:56,463 | INFO     | sum of square deviations: 314761528252.43176
[2026-03-11 06:55:51] 2026-03-11 10:54:56,522 | INFO     | sum of deviations: 341308338900.9041
[2026-03-11 06:55:51] 2026-03-11 10:54:56,522 | INFO     | mean x: 1773195804.2129352
[2026-03-11 06:55:51] 2026-03-11 10:54:56,522 | INFO     | mean y: 2640732.5611940296
[2026-03-11 06:55:51] 2026-03-11 10:54:56,522 | INFO     | intersect: -1920105410.660628
[2026-03-11 06:55:51] 2026-03-11 10:54:56,528 | INFO     | chi2: 3.1008669926463197
[2026-03-11 06:55:51] 2026-03-11 10:54:56,528 | INFO     | current chi2=3.1008669926463197 (change=47.823923764507846 %)
[2026-03-11 06:55:51] 2026-03-11 10:54:56,529 | INFO     | sum of square deviations: 310086919522.204
[2026-03-11 06:55:51] 2026-03-11 10:54:56,572 | INFO     | sum of deviations: 230576726744.53387
[2026-03-11 06:55:51] 2026-03-11 10:54:56,573 | INFO     | mean x: 1773195956.714
[2026-03-11 06:55:51] 2026-03-11 10:54:56,573 | INFO     | mean y: 2644344.369
[2026-03-11 06:55:51] 2026-03-11 10:54:56,573 | INFO     | intersect: -1315881829.5365064
[2026-03-11 06:55:51] 2026-03-11 10:54:56,574 | INFO     | chi2: 2.7500457955052364
[2026-03-11 06:55:51] 2026-03-11 10:54:56,574 | INFO     | current chi2=2.7500457955052364 (change=11.313648665778082 %)
[2026-03-11 06:55:51] 2026-03-11 10:54:56,574 | INFO     | left removable region: 20
[2026-03-11 06:55:51] 2026-03-11 10:54:56,581 | INFO     | sum of square deviations: 290959237969.52374
[2026-03-11 06:55:51] 2026-03-11 10:54:56,636 | INFO     | sum of deviations: 307111290338.6938
[2026-03-11 06:55:51] 2026-03-11 10:54:56,636 | INFO     | mean x: 1773195926.215526
[2026-03-11 06:55:51] 2026-03-11 10:54:56,636 | INFO     | mean y: 2655444.546475996
[2026-03-11 06:55:51] 2026-03-11 10:54:56,636 | INFO     | intersect: -1868976103.3076804
[2026-03-11 06:55:51] 2026-03-11 10:54:56,637 | INFO     | chi2: 0.17436600348263542
[2026-03-11 06:55:51] 2026-03-11 10:54:56,638 | INFO     | current memory leak: 1.06 B/s (using 979 data points, chi2=0.17)
[2026-03-11 06:55:51] 2026-03-11 10:54:56,639 | INFO     | could have reported an average CPU frequency of 2749 MHz (38 samples)
[2026-03-11 06:55:51] 2026-03-11 10:54:56,639 | INFO     | ..............................
[2026-03-11 06:55:51] 2026-03-11 10:54:56,639 | INFO     | . Timing measurements:
[2026-03-11 06:55:51] 2026-03-11 10:54:56,639 | INFO     | . get job = 0 s
[2026-03-11 06:55:51] 2026-03-11 10:54:56,639 | INFO     | . initial setup = 41 s
[2026-03-11 06:55:51] 2026-03-11 10:54:56,639 | INFO     | . payload setup = 47 s
[2026-03-11 06:55:51] 2026-03-11 10:54:56,639 | INFO     | . stage-in = 0 s
[2026-03-11 06:55:51] 2026-03-11 10:54:56,639 | INFO     | . payload execution = 61637 s
[2026-03-11 06:55:51] 2026-03-11 10:54:56,639 | INFO     | . stage-out = 6 s
[2026-03-11 06:55:51] 2026-03-11 10:54:56,640 | INFO     | . log creation = 2 s
[2026-03-11 06:55:51] 2026-03-11 10:54:56,644 | INFO     | ..............................
[2026-03-11 06:55:51] 2026-03-11 10:54:57,093 | INFO     | 
[2026-03-11 06:55:51] 2026-03-11 10:54:57,093 | INFO     | job summary report
[2026-03-11 06:55:51] 2026-03-11 10:54:57,093 | INFO     | --------------------------------------------------
[2026-03-11 06:55:51] 2026-03-11 10:54:57,093 | INFO     | PanDA job id: 7035989493
[2026-03-11 06:55:51] 2026-03-11 10:54:57,093 | INFO     | task id: 48847879
[2026-03-11 06:55:51] 2026-03-11 10:54:57,094 | INFO     | errors: (none)
[2026-03-11 06:55:51] 2026-03-11 10:54:57,095 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-11 06:55:51] 2026-03-11 10:54:57,095 | INFO     | pilot state: finished 
[2026-03-11 06:55:51] 2026-03-11 10:54:57,095 | INFO     | transexitcode: 0
[2026-03-11 06:55:51] 2026-03-11 10:54:57,095 | INFO     | exeerrorcode: 0
[2026-03-11 06:55:51] 2026-03-11 10:54:57,095 | INFO     | exeerrordiag: 
[2026-03-11 06:55:51] 2026-03-11 10:54:57,095 | INFO     | exitcode: 0
[2026-03-11 06:55:51] 2026-03-11 10:54:57,096 | INFO     | exitmsg: OK
[2026-03-11 06:55:51] 2026-03-11 10:54:57,096 | INFO     | cpuconsumptiontime: 142508 s
[2026-03-11 06:55:51] 2026-03-11 10:54:57,096 | INFO     | nevents: 400
[2026-03-11 06:55:51] 2026-03-11 10:54:57,096 | INFO     | neventsw: 0
[2026-03-11 06:55:51] 2026-03-11 10:54:57,096 | INFO     | pid: 3960611
[2026-03-11 06:55:51] 2026-03-11 10:54:57,096 | INFO     | pgrp: 3960611
[2026-03-11 06:55:51] 2026-03-11 10:54:57,096 | INFO     | corecount: 11
[2026-03-11 06:55:51] 2026-03-11 10:54:57,096 | INFO     | event service: False
[2026-03-11 06:55:51] 2026-03-11 10:54:57,096 | INFO     | sizes: {0: 2279221, 1: 2279906, 2: 2280367, 3: 2280367, 14: 2280395, 61688: 2331174, 61696: 2340172, 61697: 2340228, 61699: 2340422}
[2026-03-11 06:55:51] 2026-03-11 10:54:57,096 | INFO     | --------------------------------------------------
[2026-03-11 06:55:51] 2026-03-11 10:54:57,096 | INFO     | 
[2026-03-11 06:55:51] 2026-03-11 10:54:57,096 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-03-11 06:55:51] 2026-03-11 10:54:57,251 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-11 06:55:51] 2026-03-11 10:54:57,251 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-11 06:55:51] 2026-03-11 10:54:57,251 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-11 06:55:51] 2026-03-11 10:54:57,252 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-11 06:55:51] 2026-03-11 10:54:57,252 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-11 06:55:51] 2026-03-11 10:54:57,252 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-11 06:55:51] 2026-03-11 10:54:57,252 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-11 06:55:51] 2026-03-11 10:54:57,252 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-11 06:55:51] 2026-03-11 10:54:57,252 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-11 06:55:51] 2026-03-11 10:54:57,252 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-11 06:55:51] 2026-03-11 10:54:57,252 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-11 06:55:51] 2026-03-11 10:54:57,252 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-11 06:55:51] 2026-03-11 10:54:57,252 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-11 06:55:51] 2026-03-11 10:54:57,252 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-11 06:55:51] 2026-03-11 10:54:57,252 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-11 06:55:51] 2026-03-11 10:54:57,252 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-11 06:55:51] 2026-03-11 10:54:57,252 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-11 06:55:51] 2026-03-11 10:54:57,253 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-11 06:55:51] 2026-03-11 10:54:57,253 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-11 06:55:51] 2026-03-11 10:54:57,253 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-11 06:55:51] 2026-03-11 10:54:57,253 | INFO     | job 7035989493 has completed (purged errors)
[2026-03-11 06:55:51] 2026-03-11 10:54:57,253 | INFO     | overall cleanup function is called
[2026-03-11 06:55:51] 2026-03-11 10:54:58,335 | INFO     | --- collectZombieJob: --- 10, [3960611]
[2026-03-11 06:55:51] 2026-03-11 10:54:58,335 | INFO     | zombie collector waiting for pid 3960611
[2026-03-11 06:55:51] 2026-03-11 10:54:58,335 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-11 06:55:51] 2026-03-11 10:54:58,335 | INFO     | collected zombie processes
[2026-03-11 06:55:51] 2026-03-11 10:54:58,335 | INFO     | will attempt to kill all subprocesses of pid=3960611
[2026-03-11 06:55:51] 2026-03-11 10:54:59,355 | INFO     | PID=3935259 has CPU usage=16.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-03-11 06:55:51] 2026-03-11 10:54:59,355 | INFO     | .. there are 103 such processes running
[2026-03-11 06:55:51] 2026-03-11 10:55:00,208 | INFO     | process IDs to be killed: [3960611] (in reverse order)
[2026-03-11 06:55:51] 2026-03-11 10:55:01,003 | WARNING  | found no corresponding commands to process id(s)
[2026-03-11 06:55:51] 2026-03-11 10:55:01,003 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-11 06:55:51] 2026-03-11 10:55:01,098 | INFO     | did not find any defunct processes belonging to 3960611
[2026-03-11 06:55:51] 2026-03-11 10:55:01,320 | INFO     | did not find any defunct processes belonging to 3960611
[2026-03-11 06:55:51] 2026-03-11 10:55:01,320 | INFO     | ready for new job
[2026-03-11 06:55:51] 2026-03-11 10:55:01,320 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-11 06:55:51] 2026-03-11 10:55:01,347 | INFO     | **************************************
[2026-03-11 06:55:51] 2026-03-11 10:55:01,347 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-11 06:55:51] 2026-03-11 10:55:01,347 | INFO     | **************************************
[2026-03-11 06:55:51] 2026-03-11 10:55:01,347 | INFO     | 
[2026-03-11 06:55:51] 2026-03-11 10:55:01,372 | INFO     | architecture information:
[2026-03-11 06:55:51] 2026-03-11 10:55:01,402 | INFO     | executing command: cat /etc/os-release
[2026-03-11 06:55:51] 2026-03-11 10:55:01,469 | INFO     | cat /etc/os-release:
[2026-03-11 06:55:51] NAME="CentOS Linux"
[2026-03-11 06:55:51] VERSION="7 (Core)"
[2026-03-11 06:55:51] ID="centos"
[2026-03-11 06:55:51] ID_LIKE="rhel fedora"
[2026-03-11 06:55:51] VERSION_ID="7"
[2026-03-11 06:55:51] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-11 06:55:51] ANSI_COLOR="0;31"
[2026-03-11 06:55:51] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-11 06:55:51] HOME_URL="https://www.centos.org/"
[2026-03-11 06:55:51] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-11 06:55:51] 
[2026-03-11 06:55:51] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-11 06:55:51] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-11 06:55:51] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-11 06:55:51] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-11 06:55:51] 
[2026-03-11 06:55:51] 2026-03-11 10:55:01,469 | INFO     | **************************************
[2026-03-11 06:55:51] 2026-03-11 10:55:01,973 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-03-11 06:55:51] 2026-03-11 10:55:02,037 | INFO     | sufficient remaining disk space (92502228992 B)
[2026-03-11 06:55:51] 2026-03-11 10:55:02,038 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-11 06:55:51] 2026-03-11 10:55:02,038 | INFO     | current server update state: UPDATING_FINAL
[2026-03-11 06:55:51] 2026-03-11 10:55:02,038 | INFO     | update_server=False
[2026-03-11 06:55:51] 2026-03-11 10:55:02,038 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-11 06:55:51] 2026-03-11 10:55:02,048 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-11 06:55:51] 2026-03-11 10:55:02,160 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-11 06:55:51] 2026-03-11 10:55:02,173 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-11 06:55:51] 2026-03-11 10:55:02,481 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-11 06:55:51] 2026-03-11 10:55:02,481 | INFO     | aborting loop
[2026-03-11 06:55:51] 2026-03-11 10:55:02,728 | INFO     | all data control threads have been joined
[2026-03-11 06:55:51] 2026-03-11 10:55:02,835 | INFO     | all payload control threads have been joined
[2026-03-11 06:55:51] 2026-03-11 10:55:02,929 | INFO     | all job control threads have been joined
[2026-03-11 06:55:51] 2026-03-11 10:55:03,045 | INFO     | [job] retrieve thread has finished
[2026-03-11 06:55:51] 2026-03-11 10:55:03,149 | INFO     | [data] copytool_in thread has finished
[2026-03-11 06:55:51] 2026-03-11 10:55:03,153 | INFO     | [payload] execute_payloads thread has finished
[2026-03-11 06:55:51] 2026-03-11 10:55:03,166 | INFO     | [job] queue monitor thread has finished
[2026-03-11 06:55:51] 2026-03-11 10:55:03,352 | INFO     | [payload] validate_pre thread has finished
[2026-03-11 06:55:51] 2026-03-11 10:55:03,419 | INFO     | [payload] failed_post thread has finished
[2026-03-11 06:55:51] 2026-03-11 10:55:03,488 | INFO     | [job] job monitor thread has finished
[2026-03-11 06:55:51] 2026-03-11 10:55:03,734 | INFO     | [data] control thread has finished
[2026-03-11 06:55:51] 2026-03-11 10:55:03,841 | INFO     | [payload] control thread has finished
[2026-03-11 06:55:51] 2026-03-11 10:55:03,935 | INFO     | [job] control thread has finished
[2026-03-11 06:55:51] 2026-03-11 10:55:04,027 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-11 06:55:51] 2026-03-11 10:55:04,027 | INFO     | [job] create_data_payload thread has finished
[2026-03-11 06:55:51] 2026-03-11 10:55:04,069 | INFO     | [job] validate thread has finished
[2026-03-11 06:55:51] 2026-03-11 10:55:04,184 | INFO     | [data] copytool_out thread has finished
[2026-03-11 06:55:51] 2026-03-11 10:55:04,385 | INFO     | [payload] validate_post thread has finished
[2026-03-11 06:55:51] 2026-03-11 10:55:06,057 | INFO     | [data] queue_monitor thread has finished
[2026-03-11 06:55:51] 2026-03-11 10:55:21,301 | INFO     | [monitor] cgroup control has ended
[2026-03-11 06:55:51] 2026-03-11 10:55:23,297 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139936418576192)>', '<ExcThread(monitor, started 139935864579840)>']
[2026-03-11 06:55:51] 2026-03-11 10:55:28,334 | INFO     | all workflow threads have been joined
[2026-03-11 06:55:51] 2026-03-11 10:55:28,334 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-11 06:55:51] 2026-03-11 10:55:28,334 | INFO     | traces error code: 0
[2026-03-11 06:55:51] 2026-03-11 10:55:28,334 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-11 06:55:51] 2026-03-11 10:55:34,094 | INFO     | PID=3935259 has CPU usage=4.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-11 06:55:51] 2026-03-11 10:55:34,095 | INFO     | .. there are 102 such processes running
[2026-03-11 06:55:51] 2026-03-11 10:55:34,095 | INFO     | found 0 job(s) in 20 queues
[2026-03-11 06:55:51] 2026-03-11 10:55:34,095 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-11 06:55:51] 2026-03-11 10:55:34,095 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-11 06:55:51] 2026-03-11 10:55:34,095 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-11 06:55:51] 2026-03-11 10:55:34,095 | INFO     | [monitor] control thread has ended
[2026-03-11 06:55:51] 2026-03-11 10:55:35,254 [wrapper] ==== pilot stdout END ====
[2026-03-11 06:55:51] 2026-03-11 10:55:35,287 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-11 06:55:51] 2026-03-11 10:55:35,322 [wrapper] pilotpid: 3935259
[2026-03-11 06:55:51] 2026-03-11 10:55:35,338 [wrapper] Pilot exit status: 0
[2026-03-11 06:55:51] 2026-03-11 10:55:35,508 [wrapper] pandaids: 7035989493
[2026-03-11 06:55:51] 2026-03-11 10:55:35,922 [wrapper] cleanup supervisor_pilot 1381462 3935260
[2026-03-11 06:55:51] 2026-03-11 10:55:35,974 [wrapper] Test setup, not cleaning
[2026-03-11 06:55:51] 2026-03-11 10:55:36,019 [wrapper] apfmon messages muted
[2026-03-11 06:55:51] 2026-03-11 10:55:36,057 [wrapper] ==== wrapper stdout END ====
[2026-03-11 06:55:51] 2026-03-11 10:55:36,091 [wrapper] ==== wrapper stderr END ====
[2026-03-11 06:55:51]  *** Error codes and diagnostics ***
[2026-03-11 06:55:51]     "exeErrorCode": 0,
[2026-03-11 06:55:51]     "exeErrorDiag": "",
[2026-03-11 06:55:51]     "pilotErrorCode": 0,
[2026-03-11 06:55:51]     "pilotErrorDiag": "",
[2026-03-11 06:55:51]  *** Listing of results directory ***
[2026-03-11 06:55:51] total 495756
[2026-03-11 06:55:51] -rw-r--r--. 1 boincer umatlas      5111 Mar  2 07:41 queuedata.json
[2026-03-11 06:55:51] -rw-r--r--. 1 boincer umatlas    584627 Mar  2 07:41 pilot3.tar.gz
[2026-03-11 06:55:51] -rwx------. 1 boincer umatlas     36322 Mar  2 07:43 runpilot2-wrapper.sh
[2026-03-11 06:55:51] -rw-r--r--. 1 boincer umatlas       100 Mar 10 13:44 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-11 06:55:51] -rwxr-xr-x. 1 boincer umatlas      7986 Mar 10 13:44 run_atlas
[2026-03-11 06:55:51] -rw-r--r--. 1 boincer umatlas       105 Mar 10 13:44 job.xml
[2026-03-11 06:55:51] -rw-r--r--. 2 boincer umatlas 225778515 Mar 10 13:44 EVNT.48454693._000002.pool.root.1
[2026-03-11 06:55:51] -rw-r--r--. 2 boincer umatlas     15845 Mar 10 13:44 start_atlas.sh
[2026-03-11 06:55:51] drwxrwx--x. 2 boincer umatlas      4096 Mar 10 13:44 shared
[2026-03-11 06:55:51] -rw-r--r--. 2 boincer umatlas    597973 Mar 10 13:44 input.tar.gz
[2026-03-11 06:55:51] -rw-r--r--. 1 boincer umatlas         0 Mar 10 13:44 boinc_lockfile
[2026-03-11 06:55:51] -rw-r--r--. 1 boincer umatlas      2624 Mar 10 13:44 pandaJob.out
[2026-03-11 06:55:51] -rw-------. 1 boincer umatlas        57 Mar 10 13:44 setup.sh.local
[2026-03-11 06:55:51] -rw-------. 1 boincer umatlas   1006702 Mar 10 13:45 agis_schedconf.cvmfs.json
[2026-03-11 06:55:51] -rw-------. 1 boincer umatlas       441 Mar 10 13:46 workernode_map.json
[2026-03-11 06:55:51] drwx------. 5 boincer umatlas      4096 Mar 10 13:46 pilot3
[2026-03-11 06:55:51] -rw-r--r--. 1 boincer umatlas      6867 Mar 11 06:49 init_data.xml
[2026-03-11 06:55:51] -rw-------. 1 boincer umatlas 263121868 Mar 11 06:51 HITS.48847879._000035.pool.root.1
[2026-03-11 06:55:51] -rw-r--r--. 1 boincer umatlas       531 Mar 11 06:51 boinc_task_state.xml
[2026-03-11 06:55:51] -rw-------. 1 boincer umatlas        95 Mar 11 06:54 pilot_heartbeat.json
[2026-03-11 06:55:51] -rw-------. 1 boincer umatlas      1047 Mar 11 06:54 memory_monitor_summary.json
[2026-03-11 06:55:51] -rw-------. 1 boincer umatlas   1511578 Mar 11 06:54 agis_ddmendpoints.agis.ALL.json
[2026-03-11 06:55:51] -rw-------. 1 boincer umatlas   1013262 Mar 11 06:54 log.48847879._000035.job.log.tgz.1
[2026-03-11 06:55:51] -rw-------. 1 boincer umatlas      6393 Mar 11 06:54 heartbeat.json
[2026-03-11 06:55:51] -rw-------. 1 boincer umatlas       824 Mar 11 06:55 pilotlog.txt
[2026-03-11 06:55:51] -rw-------. 1 boincer umatlas   6395099 Mar 11 06:55 log.48847879._000035.job.log.1
[2026-03-11 06:55:51] -rw-------. 1 boincer umatlas       357 Mar 11 06:55 output.list
[2026-03-11 06:55:51] -rw-r--r--. 1 boincer umatlas       620 Mar 11 06:55 runtime_log
[2026-03-11 06:55:51] -rw-------. 1 boincer umatlas   7424000 Mar 11 06:55 result.tar.gz
[2026-03-11 06:55:51] -rw-r--r--. 1 boincer umatlas      9344 Mar 11 06:55 runtime_log.err
[2026-03-11 06:55:51] -rw-------. 1 boincer umatlas       659 Mar 11 06:55 pnRKDmNnHH9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmKQDLDmRHy85m.diag
[2026-03-11 06:55:51] -rw-r--r--. 1 boincer umatlas        29 Mar 11 06:55 wrapper_checkpoint.txt
[2026-03-11 06:55:51] -rw-r--r--. 1 boincer umatlas      8192 Mar 11 06:55 boinc_mmap_file
[2026-03-11 06:55:51] -rw-r--r--. 1 boincer umatlas     21044 Mar 11 06:55 stderr.txt
[2026-03-11 06:55:51] HITS file was successfully produced:
[2026-03-11 06:55:51] -rw-------. 1 boincer umatlas 263121868 Mar 11 06:51 shared/HITS.pool.root.1
[2026-03-11 06:55:51]  *** Contents of shared directory: ***
[2026-03-11 06:55:51] total 485304
[2026-03-11 06:55:51] -rw-r--r--. 2 boincer umatlas 225778515 Mar 10 13:44 ATLAS.root_0
[2026-03-11 06:55:51] -rw-r--r--. 2 boincer umatlas     15845 Mar 10 13:44 start_atlas.sh
[2026-03-11 06:55:51] -rw-r--r--. 2 boincer umatlas    597973 Mar 10 13:44 input.tar.gz
[2026-03-11 06:55:51] -rw-------. 1 boincer umatlas 263121868 Mar 11 06:51 HITS.pool.root.1
[2026-03-11 06:55:51] -rw-------. 1 boincer umatlas   7424000 Mar 11 06:55 result.tar.gz
06:55:52 (3928983): run_atlas exited; CPU time 147040.200855
06:55:52 (3928983): called boinc_finish(0)

</stderr_txt>
]]>

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