Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
13:29:42 (3360162): wrapper (7.7.26015): starting
13:29:42 (3360162): wrapper: running run_atlas (--nthreads 9)
[2026-03-10 13:29:42] Arguments: --nthreads 9
[2026-03-10 13:29:42] Threads: 9
[2026-03-10 13:29:42] Checking for CVMFS
[2026-03-10 13:29:42] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-10 13:29:42] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-10 13:29:42] Running cvmfs_config stat atlas.cern.ch
[2026-03-10 13:29:43] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-10 13:29:43] 2.13.3.0 7405 109578 251528 157125 1 326 33144461 40960000 25817 16776704 0 479085074 99.671 434242447 34700 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-03-10 13:29:43] CVMFS is ok
[2026-03-10 13:29:43] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-10 13:29:43] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-10 13:29:43] Further information can be found at the LHC@home message board.
[2026-03-10 13:29:43] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-10 13:29:43] Checking for apptainer binary...
[2026-03-10 13:29:43] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-10 13:29:43] Running /usr/bin/apptainer --version
[2026-03-10 13:29:43] apptainer version 1.4.5-2.el9
[2026-03-10 13:29:43] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-10 13:29:43] c-212-3.aglt2.org
[2026-03-10 13:29:43] apptainer works
[2026-03-10 13:29:44] Set ATHENA_PROC_NUMBER=9
[2026-03-10 13:29:44] Set ATHENA_CORE_NUMBER=9
[2026-03-10 13:29:44] Starting ATLAS job with PandaID=7036003398
[2026-03-10 13:29:44] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-10 17:26:06]  *** The last 200 lines of the pilot log: ***
[2026-03-10 17:26:06] 2026-03-10 21:25:31,002 | INFO     | preparing for final server update for job 7036003398 in state='finished'
[2026-03-10 17:26:06] 2026-03-10 21:25:31,002 | INFO     | reading metadata from: /tmp/boinchome/slots/0/PanDA_Pilot-7036003398/jobReport.json
[2026-03-10 17:26:06] 2026-03-10 21:25:31,004 | INFO     | added worker_node to metadata from /tmp/boinchome/slots/0/workernode_map.json
[2026-03-10 17:26:06] 2026-03-10 21:25:31,004 | INFO     | this job has now completed (state=finished)
[2026-03-10 17:26:06] 2026-03-10 21:25:31,004 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-10 17:26:06] 2026-03-10 21:25:31,004 | INFO     | log transfer has been attempted: DONE
[2026-03-10 17:26:06] 2026-03-10 21:25:31,004 | INFO     | job 7036003398 has finished - writing final server update
[2026-03-10 17:26:06] 2026-03-10 21:25:31,004 | INFO     | total number of processed events: 400 (read)
[2026-03-10 17:26:06] 2026-03-10 21:25:31,018 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-7036003398/memory_monitor_summary.json (trf name=prmon)
[2026-03-10 17:26:06] 2026-03-10 21:25:31,019 | INFO     | extracted standard info from prmon json
[2026-03-10 17:26:06] 2026-03-10 21:25:31,019 | INFO     | extracted standard memory fields from prmon json
[2026-03-10 17:26:06] 2026-03-10 21:25:31,019 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-10 17:26:06] 2026-03-10 21:25:31,019 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-10 17:26:06] 2026-03-10 21:25:31,020 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-10 17:26:06] 2026-03-10 21:25:31,023 | INFO     | fitting pss+swap vs Time
[2026-03-10 17:26:06] 2026-03-10 21:25:31,023 | INFO     | sum of square deviations: 3822097279.5670934
[2026-03-10 17:26:06] 2026-03-10 21:25:31,025 | INFO     | sum of deviations: -7987421642.865806
[2026-03-10 17:26:06] 2026-03-10 21:25:31,025 | INFO     | mean x: 1773170875.138528
[2026-03-10 17:26:06] 2026-03-10 21:25:31,025 | INFO     | mean y: 2603478.2770562773
[2026-03-10 17:26:06] 2026-03-10 21:25:31,025 | INFO     | intersect: 3708177248.0229034
[2026-03-10 17:26:06] 2026-03-10 21:25:31,025 | INFO     | chi2: 1.7171404423923609
[2026-03-10 17:26:06] 2026-03-10 21:25:31,026 | INFO     | sum of square deviations: 3579232824.2477865
[2026-03-10 17:26:06] 2026-03-10 21:25:31,027 | INFO     | sum of deviations: -8112041883.628316
[2026-03-10 17:26:06] 2026-03-10 21:25:31,027 | INFO     | mean x: 1773170722.6371682
[2026-03-10 17:26:06] 2026-03-10 21:25:31,027 | INFO     | mean y: 2603403.9557522126
[2026-03-10 17:26:06] 2026-03-10 21:25:31,027 | INFO     | intersect: 4021351519.8677573
[2026-03-10 17:26:06] 2026-03-10 21:25:31,027 | INFO     | chi2: 1.7155382890521917
[2026-03-10 17:26:06] 2026-03-10 21:25:31,027 | INFO     | current chi2=1.7155382890521917 (change=0.09330357032048887 %)
[2026-03-10 17:26:06] 2026-03-10 21:25:31,028 | INFO     | right removable region: 225
[2026-03-10 17:26:06] 2026-03-10 21:25:31,028 | INFO     | sum of square deviations: 3579227151.969036
[2026-03-10 17:26:06] 2026-03-10 21:25:31,029 | INFO     | sum of deviations: -44907046079.61506
[2026-03-10 17:26:06] 2026-03-10 21:25:31,029 | INFO     | mean x: 1773171027.641593
[2026-03-10 17:26:06] 2026-03-10 21:25:31,029 | INFO     | mean y: 2626422.597345133
[2026-03-10 17:26:06] 2026-03-10 21:25:31,029 | INFO     | intersect: 22249851777.247948
[2026-03-10 17:26:06] 2026-03-10 21:25:31,030 | INFO     | chi2: 0.1693788200880825
[2026-03-10 17:26:06] 2026-03-10 21:25:31,030 | INFO     | current chi2=0.1693788200880825 (change=90.13599494214345 %)
[2026-03-10 17:26:06] 2026-03-10 21:25:31,030 | INFO     | sum of square deviations: 3346868849.3665266
[2026-03-10 17:26:06] 2026-03-10 21:25:31,031 | INFO     | sum of deviations: -38057896281.864265
[2026-03-10 17:26:06] 2026-03-10 21:25:31,031 | INFO     | mean x: 1773171180.1447964
[2026-03-10 17:26:06] 2026-03-10 21:25:31,031 | INFO     | mean y: 2621897.6832579183
[2026-03-10 17:26:06] 2026-03-10 21:25:31,032 | INFO     | intersect: 20165696072.733257
[2026-03-10 17:26:06] 2026-03-10 21:25:31,032 | INFO     | chi2: 0.14731290940260355
[2026-03-10 17:26:06] 2026-03-10 21:25:31,032 | INFO     | current chi2=0.14731290940260355 (change=13.02755012344752 %)
[2026-03-10 17:26:06] 2026-03-10 21:25:31,032 | INFO     | left removable region: 20
[2026-03-10 17:26:06] 2026-03-10 21:25:31,032 | INFO     | sum of square deviations: 2671251025.6097674
[2026-03-10 17:26:06] 2026-03-10 21:25:31,033 | INFO     | sum of deviations: -19685119579.85366
[2026-03-10 17:26:06] 2026-03-10 21:25:31,033 | INFO     | mean x: 1773171302.1463416
[2026-03-10 17:26:06] 2026-03-10 21:25:31,034 | INFO     | mean y: 2609249.1951219514
[2026-03-10 17:26:06] 2026-03-10 21:25:31,034 | INFO     | intersect: 13069553831.96707
[2026-03-10 17:26:06] 2026-03-10 21:25:31,034 | INFO     | chi2: 0.07772409436285227
[2026-03-10 17:26:06] 2026-03-10 21:25:31,034 | INFO     | current memory leak: -7.37 B/s (using 205 data points, chi2=0.08)
[2026-03-10 17:26:06] 2026-03-10 21:25:31,034 | INFO     | could have reported an average CPU frequency of 3261 MHz (11 samples)
[2026-03-10 17:26:06] 2026-03-10 21:25:31,035 | INFO     | ..............................
[2026-03-10 17:26:06] 2026-03-10 21:25:31,035 | INFO     | . Timing measurements:
[2026-03-10 17:26:06] 2026-03-10 21:25:31,035 | INFO     | . get job = 0 s
[2026-03-10 17:26:06] 2026-03-10 21:25:31,035 | INFO     | . initial setup = 15 s
[2026-03-10 17:26:06] 2026-03-10 21:25:31,035 | INFO     | . payload setup = 20 s
[2026-03-10 17:26:06] 2026-03-10 21:25:31,035 | INFO     | . stage-in = 0 s
[2026-03-10 17:26:06] 2026-03-10 21:25:31,035 | INFO     | . payload execution = 14069 s
[2026-03-10 17:26:06] 2026-03-10 21:25:31,035 | INFO     | . stage-out = 2 s
[2026-03-10 17:26:06] 2026-03-10 21:25:31,035 | INFO     | . log creation = 0 s
[2026-03-10 17:26:06] 2026-03-10 21:25:31,035 | INFO     | ..............................
[2026-03-10 17:26:06] 2026-03-10 21:25:31,234 | INFO     | 
[2026-03-10 17:26:06] 2026-03-10 21:25:31,234 | INFO     | job summary report
[2026-03-10 17:26:06] 2026-03-10 21:25:31,235 | INFO     | --------------------------------------------------
[2026-03-10 17:26:06] 2026-03-10 21:25:31,235 | INFO     | PanDA job id: 7036003398
[2026-03-10 17:26:06] 2026-03-10 21:25:31,235 | INFO     | task id: 48847525
[2026-03-10 17:26:06] 2026-03-10 21:25:31,235 | INFO     | errors: (none)
[2026-03-10 17:26:06] 2026-03-10 21:25:31,235 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-10 17:26:06] 2026-03-10 21:25:31,235 | INFO     | pilot state: finished 
[2026-03-10 17:26:06] 2026-03-10 21:25:31,235 | INFO     | transexitcode: 0
[2026-03-10 17:26:06] 2026-03-10 21:25:31,235 | INFO     | exeerrorcode: 0
[2026-03-10 17:26:06] 2026-03-10 21:25:31,235 | INFO     | exeerrordiag: 
[2026-03-10 17:26:06] 2026-03-10 21:25:31,235 | INFO     | exitcode: 0
[2026-03-10 17:26:06] 2026-03-10 21:25:31,235 | INFO     | exitmsg: OK
[2026-03-10 17:26:06] 2026-03-10 21:25:31,235 | INFO     | cpuconsumptiontime: 70906 s
[2026-03-10 17:26:06] 2026-03-10 21:25:31,235 | INFO     | nevents: 400
[2026-03-10 17:26:06] 2026-03-10 21:25:31,235 | INFO     | neventsw: 0
[2026-03-10 17:26:06] 2026-03-10 21:25:31,235 | INFO     | pid: 3387701
[2026-03-10 17:26:06] 2026-03-10 21:25:31,235 | INFO     | pgrp: 3387701
[2026-03-10 17:26:06] 2026-03-10 21:25:31,236 | INFO     | corecount: 9
[2026-03-10 17:26:06] 2026-03-10 21:25:31,236 | INFO     | event service: False
[2026-03-10 17:26:06] 2026-03-10 21:25:31,236 | INFO     | sizes: {0: 2279857, 1: 2280318, 14094: 2310675, 14095: 2310674, 14098: 2319728, 14101: 2319784, 14104: 2320106}
[2026-03-10 17:26:06] 2026-03-10 21:25:31,236 | INFO     | --------------------------------------------------
[2026-03-10 17:26:06] 2026-03-10 21:25:31,236 | INFO     | 
[2026-03-10 17:26:06] 2026-03-10 21:25:31,236 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-03-10 17:26:06] 2026-03-10 21:25:31,535 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-10 17:26:06] 2026-03-10 21:25:31,535 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-10 17:26:06] 2026-03-10 21:25:31,535 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-10 17:26:06] 2026-03-10 21:25:31,535 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-10 17:26:06] 2026-03-10 21:25:31,535 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-10 17:26:06] 2026-03-10 21:25:31,535 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-10 17:26:06] 2026-03-10 21:25:31,536 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-10 17:26:06] 2026-03-10 21:25:31,536 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-10 17:26:06] 2026-03-10 21:25:31,536 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-10 17:26:06] 2026-03-10 21:25:31,536 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-10 17:26:06] 2026-03-10 21:25:31,536 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-10 17:26:06] 2026-03-10 21:25:31,536 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-10 17:26:06] 2026-03-10 21:25:31,536 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-10 17:26:06] 2026-03-10 21:25:31,536 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-10 17:26:06] 2026-03-10 21:25:31,536 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-10 17:26:06] 2026-03-10 21:25:31,536 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-10 17:26:06] 2026-03-10 21:25:31,536 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-10 17:26:06] 2026-03-10 21:25:31,536 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-10 17:26:06] 2026-03-10 21:25:31,536 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-10 17:26:06] 2026-03-10 21:25:31,537 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-10 17:26:06] 2026-03-10 21:25:31,537 | INFO     | job 7036003398 has completed (purged errors)
[2026-03-10 17:26:06] 2026-03-10 21:25:31,537 | INFO     | overall cleanup function is called
[2026-03-10 17:26:06] 2026-03-10 21:25:32,545 | INFO     | --- collectZombieJob: --- 10, [3387701]
[2026-03-10 17:26:06] 2026-03-10 21:25:32,545 | INFO     | zombie collector waiting for pid 3387701
[2026-03-10 17:26:06] 2026-03-10 21:25:32,546 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-10 17:26:06] 2026-03-10 21:25:32,546 | INFO     | collected zombie processes
[2026-03-10 17:26:06] 2026-03-10 21:25:32,546 | INFO     | will attempt to kill all subprocesses of pid=3387701
[2026-03-10 17:26:06] 2026-03-10 21:25:33,075 | INFO     | PID=3369355 has CPU usage=12.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-03-10 17:26:06] 2026-03-10 21:25:33,075 | INFO     | .. there are 37 such processes running
[2026-03-10 17:26:06] 2026-03-10 21:25:33,330 | INFO     | process IDs to be killed: [3387701] (in reverse order)
[2026-03-10 17:26:06] 2026-03-10 21:25:33,512 | WARNING  | found no corresponding commands to process id(s)
[2026-03-10 17:26:06] 2026-03-10 21:25:33,512 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-10 17:26:06] 2026-03-10 21:25:33,532 | INFO     | did not find any defunct processes belonging to 3387701
[2026-03-10 17:26:06] 2026-03-10 21:25:33,552 | INFO     | did not find any defunct processes belonging to 3387701
[2026-03-10 17:26:06] 2026-03-10 21:25:33,552 | INFO     | ready for new job
[2026-03-10 17:26:06] 2026-03-10 21:25:33,552 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-10 17:26:06] 2026-03-10 21:25:33,554 | INFO     | **************************************
[2026-03-10 17:26:06] 2026-03-10 21:25:33,554 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-10 17:26:06] 2026-03-10 21:25:33,554 | INFO     | **************************************
[2026-03-10 17:26:06] 2026-03-10 21:25:33,554 | INFO     | 
[2026-03-10 17:26:06] 2026-03-10 21:25:33,559 | INFO     | architecture information:
[2026-03-10 17:26:06] 2026-03-10 21:25:33,559 | INFO     | executing command: cat /etc/os-release
[2026-03-10 17:26:06] 2026-03-10 21:25:33,575 | INFO     | cat /etc/os-release:
[2026-03-10 17:26:06] NAME="CentOS Linux"
[2026-03-10 17:26:06] VERSION="7 (Core)"
[2026-03-10 17:26:06] ID="centos"
[2026-03-10 17:26:06] ID_LIKE="rhel fedora"
[2026-03-10 17:26:06] VERSION_ID="7"
[2026-03-10 17:26:06] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-10 17:26:06] ANSI_COLOR="0;31"
[2026-03-10 17:26:06] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-10 17:26:06] HOME_URL="https://www.centos.org/"
[2026-03-10 17:26:06] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-10 17:26:06] 
[2026-03-10 17:26:06] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-10 17:26:06] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-10 17:26:06] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-10 17:26:06] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-10 17:26:06] 
[2026-03-10 17:26:06] 2026-03-10 21:25:33,576 | INFO     | **************************************
[2026-03-10 17:26:06] 2026-03-10 21:25:34,080 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-03-10 17:26:06] 2026-03-10 21:25:34,180 | INFO     | sufficient remaining disk space (125609967616 B)
[2026-03-10 17:26:06] 2026-03-10 21:25:34,180 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-10 17:26:06] 2026-03-10 21:25:34,180 | INFO     | current server update state: UPDATING_FINAL
[2026-03-10 17:26:06] 2026-03-10 21:25:34,180 | INFO     | update_server=False
[2026-03-10 17:26:06] 2026-03-10 21:25:34,181 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-10 17:26:06] 2026-03-10 21:25:34,181 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-10 17:26:06] 2026-03-10 21:25:34,181 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-10 17:26:06] 2026-03-10 21:25:34,181 | INFO     | aborting loop
[2026-03-10 17:26:06] 2026-03-10 21:25:34,920 | INFO     | all data control threads have been joined
[2026-03-10 17:26:06] 2026-03-10 21:25:34,941 | INFO     | all payload control threads have been joined
[2026-03-10 17:26:06] 2026-03-10 21:25:34,960 | INFO     | all job control threads have been joined
[2026-03-10 17:26:06] 2026-03-10 21:25:35,187 | INFO     | [job] retrieve thread has finished
[2026-03-10 17:26:06] 2026-03-10 21:25:35,189 | INFO     | [job] job monitor thread has finished
[2026-03-10 17:26:06] 2026-03-10 21:25:35,226 | INFO     | [payload] validate_post thread has finished
[2026-03-10 17:26:06] 2026-03-10 21:25:35,281 | INFO     | [payload] execute_payloads thread has finished
[2026-03-10 17:26:06] 2026-03-10 21:25:35,383 | INFO     | [job] validate thread has finished
[2026-03-10 17:26:06] 2026-03-10 21:25:35,505 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-10 17:26:06] 2026-03-10 21:25:35,926 | INFO     | [data] control thread has finished
[2026-03-10 17:26:06] 2026-03-10 21:25:35,947 | INFO     | [payload] control thread has finished
[2026-03-10 17:26:06] 2026-03-10 21:25:35,966 | INFO     | [job] control thread has finished
[2026-03-10 17:26:06] 2026-03-10 21:25:36,247 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-10 17:26:06] 2026-03-10 21:25:36,296 | INFO     | [payload] failed_post thread has finished
[2026-03-10 17:26:06] 2026-03-10 21:25:36,373 | INFO     | [payload] validate_pre thread has finished
[2026-03-10 17:26:06] 2026-03-10 21:25:36,396 | INFO     | [data] copytool_in thread has finished
[2026-03-10 17:26:06] 2026-03-10 21:25:36,550 | INFO     | [job] create_data_payload thread has finished
[2026-03-10 17:26:06] 2026-03-10 21:25:37,253 | INFO     | [job] queue monitor thread has finished
[2026-03-10 17:26:06] 2026-03-10 21:25:37,510 | INFO     | [data] copytool_out thread has finished
[2026-03-10 17:26:06] 2026-03-10 21:25:38,219 | INFO     | [data] queue_monitor thread has finished
[2026-03-10 17:26:06] 2026-03-10 21:25:45,168 | INFO     | job.realtimelogging is not enabled
[2026-03-10 17:26:06] 2026-03-10 21:25:46,173 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-10 17:26:06] 2026-03-10 21:25:49,460 | INFO     | [monitor] cgroup control has ended
[2026-03-10 17:26:06] 2026-03-10 21:25:50,455 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140397794654016)>', '<ExcThread(monitor, started 140397430953728)>']
[2026-03-10 17:26:06] 2026-03-10 21:25:55,492 | INFO     | all workflow threads have been joined
[2026-03-10 17:26:06] 2026-03-10 21:25:55,493 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-10 17:26:06] 2026-03-10 21:25:55,493 | INFO     | traces error code: 0
[2026-03-10 17:26:06] 2026-03-10 21:25:55,493 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-10 17:26:06] 2026-03-10 21:26:05,845 | INFO     | PID=3369355 has CPU usage=3.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-10 17:26:06] 2026-03-10 21:26:05,846 | INFO     | .. there are 37 such processes running
[2026-03-10 17:26:06] 2026-03-10 21:26:05,847 | INFO     | found 0 job(s) in 20 queues
[2026-03-10 17:26:06] 2026-03-10 21:26:05,847 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-10 17:26:06] 2026-03-10 21:26:05,847 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-10 17:26:06] 2026-03-10 21:26:05,847 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-10 17:26:06] 2026-03-10 21:26:05,847 | INFO     | [monitor] control thread has ended
[2026-03-10 17:26:06] 2026-03-10 21:26:05,963 [wrapper] ==== pilot stdout END ====
[2026-03-10 17:26:06] 2026-03-10 21:26:05,967 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-10 17:26:06] 2026-03-10 21:26:05,970 [wrapper] pilotpid: 3369355
[2026-03-10 17:26:06] 2026-03-10 21:26:05,972 [wrapper] Pilot exit status: 0
[2026-03-10 17:26:06] 2026-03-10 21:26:05,991 [wrapper] pandaids: 7036003398
[2026-03-10 17:26:06] 2026-03-10 21:26:06,170 [wrapper] cleanup supervisor_pilot   51680 3369356
[2026-03-10 17:26:06] 2026-03-10 21:26:06,172 [wrapper] Test setup, not cleaning
[2026-03-10 17:26:06] 2026-03-10 21:26:06,175 [wrapper] apfmon messages muted
[2026-03-10 17:26:06] 2026-03-10 21:26:06,178 [wrapper] ==== wrapper stdout END ====
[2026-03-10 17:26:06] 2026-03-10 21:26:06,181 [wrapper] ==== wrapper stderr END ====
[2026-03-10 17:26:06]  *** Error codes and diagnostics ***
[2026-03-10 17:26:06]     "exeErrorCode": 0,
[2026-03-10 17:26:06]     "exeErrorDiag": "",
[2026-03-10 17:26:06]     "pilotErrorCode": 0,
[2026-03-10 17:26:06]     "pilotErrorDiag": "",
[2026-03-10 17:26:06]  *** Listing of results directory ***
[2026-03-10 17:26:06] total 475248
[2026-03-10 17:26:06] -rw-r--r--. 1 boincer umatlas      5111 Mar  2 08:57 queuedata.json
[2026-03-10 17:26:06] -rw-r--r--. 1 boincer umatlas    584627 Mar  2 08:57 pilot3.tar.gz
[2026-03-10 17:26:06] -rwx------. 1 boincer umatlas     36322 Mar  2 08:58 runpilot2-wrapper.sh
[2026-03-10 17:26:06] -rw-r--r--. 1 boincer umatlas       100 Mar 10 13:29 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-10 17:26:06] -rwxr-xr-x. 1 boincer umatlas      7986 Mar 10 13:29 run_atlas
[2026-03-10 17:26:06] -rw-r--r--. 1 boincer umatlas       105 Mar 10 13:29 job.xml
[2026-03-10 17:26:06] -rw-r--r--. 2 boincer umatlas 253932730 Mar 10 13:29 EVNT.48453847._000003.pool.root.1
[2026-03-10 17:26:06] -rw-r--r--. 2 boincer umatlas     15845 Mar 10 13:29 start_atlas.sh
[2026-03-10 17:26:06] drwxrwx--x. 2 boincer umatlas      4096 Mar 10 13:29 shared
[2026-03-10 17:26:06] -rw-r--r--. 2 boincer umatlas    597963 Mar 10 13:29 input.tar.gz
[2026-03-10 17:26:06] -rw-r--r--. 1 boincer umatlas         0 Mar 10 13:29 boinc_lockfile
[2026-03-10 17:26:06] -rw-r--r--. 1 boincer umatlas      2603 Mar 10 13:29 pandaJob.out
[2026-03-10 17:26:06] -rw-------. 1 boincer umatlas        57 Mar 10 13:29 setup.sh.local
[2026-03-10 17:26:06] -rw-------. 1 boincer umatlas   1006702 Mar 10 13:30 agis_schedconf.cvmfs.json
[2026-03-10 17:26:06] -rw-------. 1 boincer umatlas       424 Mar 10 13:30 workernode_map.json
[2026-03-10 17:26:06] drwx------. 5 boincer umatlas      4096 Mar 10 13:30 pilot3
[2026-03-10 17:26:06] -rw-r--r--. 1 boincer umatlas      6957 Mar 10 17:20 init_data.xml
[2026-03-10 17:26:06] -rw-------. 1 boincer umatlas 224257138 Mar 10 17:24 HITS.48847525._000054.pool.root.1
[2026-03-10 17:26:06] -rw-r--r--. 1 boincer umatlas       530 Mar 10 17:24 boinc_task_state.xml
[2026-03-10 17:26:06] -rw-------. 1 boincer umatlas      1036 Mar 10 17:25 memory_monitor_summary.json
[2026-03-10 17:26:06] -rw-------. 1 boincer umatlas   1511578 Mar 10 17:25 agis_ddmendpoints.agis.ALL.json
[2026-03-10 17:26:06] -rw-------. 1 boincer umatlas    454327 Mar 10 17:25 log.48847525._000054.job.log.tgz.1
[2026-03-10 17:26:06] -rw-------. 1 boincer umatlas      6315 Mar 10 17:25 heartbeat.json
[2026-03-10 17:26:06] -rw-r--r--. 1 boincer umatlas      8192 Mar 10 17:26 boinc_mmap_file
[2026-03-10 17:26:06] -rw-r--r--. 1 boincer umatlas        28 Mar 10 17:26 wrapper_checkpoint.txt
[2026-03-10 17:26:06] -rw-------. 1 boincer umatlas       823 Mar 10 17:26 pilotlog.txt
[2026-03-10 17:26:06] -rw-------. 1 boincer umatlas        95 Mar 10 17:26 pilot_heartbeat.json
[2026-03-10 17:26:06] -rw-------. 1 boincer umatlas   1809317 Mar 10 17:26 log.48847525._000054.job.log.1
[2026-03-10 17:26:06] -rw-------. 1 boincer umatlas       357 Mar 10 17:26 output.list
[2026-03-10 17:26:06] -rw-r--r--. 1 boincer umatlas       620 Mar 10 17:26 runtime_log
[2026-03-10 17:26:06] -rw-------. 1 boincer umatlas   2283520 Mar 10 17:26 result.tar.gz
[2026-03-10 17:26:06] -rw-r--r--. 1 boincer umatlas      9337 Mar 10 17:26 runtime_log.err
[2026-03-10 17:26:06] -rw-------. 1 boincer umatlas       656 Mar 10 17:26 21YNDm1xIH9n9Rq4apOajLDm4fhM0noT9bVooX4SDm5WBLDmxi8pkn.diag
[2026-03-10 17:26:06] -rw-r--r--. 1 boincer umatlas     21428 Mar 10 17:26 stderr.txt
[2026-03-10 17:26:06] HITS file was successfully produced:
[2026-03-10 17:26:06] -rw-------. 1 boincer umatlas 224257138 Mar 10 17:24 shared/HITS.pool.root.1
[2026-03-10 17:26:06]  *** Contents of shared directory: ***
[2026-03-10 17:26:06] total 469824
[2026-03-10 17:26:06] -rw-r--r--. 2 boincer umatlas 253932730 Mar 10 13:29 ATLAS.root_0
[2026-03-10 17:26:06] -rw-r--r--. 2 boincer umatlas     15845 Mar 10 13:29 start_atlas.sh
[2026-03-10 17:26:06] -rw-r--r--. 2 boincer umatlas    597963 Mar 10 13:29 input.tar.gz
[2026-03-10 17:26:06] -rw-------. 1 boincer umatlas 224257138 Mar 10 17:24 HITS.pool.root.1
[2026-03-10 17:26:06] -rw-------. 1 boincer umatlas   2283520 Mar 10 17:26 result.tar.gz
17:26:28 (3360162): run_atlas exited; CPU time 71428.199371
17:26:28 (3360162): called boinc_finish(0)

</stderr_txt>
]]>

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