Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
23:41:09 (423679): wrapper (7.7.26015): starting
23:41:09 (423679): wrapper: running run_atlas (--nthreads 4)
[2026-03-10 23:41:09] Arguments: --nthreads 4
[2026-03-10 23:41:09] Threads: 4
[2026-03-10 23:41:09] Checking for CVMFS
[2026-03-10 23:41:10] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-10 23:41:10] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-10 23:41:10] Running cvmfs_config stat atlas.cern.ch
[2026-03-10 23:41:10] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-10 23:41:10] 2.9.2.0 3071 1879 94340 157132 1 188 34820844 36864001 0 130560 0 1203375 99.987 73381 13252 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-10 23:41:10] CVMFS is ok
[2026-03-10 23:41:10] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-10 23:41:10] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-10 23:41:10] Further information can be found at the LHC@home message board.
[2026-03-10 23:41:10] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-10 23:41:10] Checking for apptainer binary...
[2026-03-10 23:41:10] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-10 23:41:10] Running /usr/bin/apptainer --version
[2026-03-10 23:41:10] apptainer version 1.4.1-1.1
[2026-03-10 23:41:10] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-10 23:41:10] thA373a
[2026-03-10 23:41:10] apptainer works
[2026-03-10 23:41:13] Set ATHENA_PROC_NUMBER=4
[2026-03-10 23:41:13] Set ATHENA_CORE_NUMBER=4
[2026-03-10 23:41:13] Starting ATLAS job with PandaID=7042567927
[2026-03-10 23:41:13] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-10 23:45:38]  *** The last 200 lines of the pilot log: ***
[2026-03-10 23:45:38] 2026-03-10 22:45:07,794 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-10 23:45:38] 2026-03-10 22:45:07,795 | INFO     | **************************************
[2026-03-10 23:45:38] 2026-03-10 22:45:07,795 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-10 23:45:38] 2026-03-10 22:45:07,795 | INFO     | **************************************
[2026-03-10 23:45:38] 2026-03-10 22:45:07,795 | INFO     | 
[2026-03-10 23:45:38] 2026-03-10 22:45:07,796 | INFO     | architecture information:
[2026-03-10 23:45:38] 2026-03-10 22:45:07,796 | INFO     | executing command: cat /etc/os-release
[2026-03-10 23:45:38] 2026-03-10 22:45:07,811 | INFO     | cat /etc/os-release:
[2026-03-10 23:45:38] NAME="CentOS Linux"
[2026-03-10 23:45:38] VERSION="7 (Core)"
[2026-03-10 23:45:38] ID="centos"
[2026-03-10 23:45:38] ID_LIKE="rhel fedora"
[2026-03-10 23:45:38] VERSION_ID="7"
[2026-03-10 23:45:38] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-10 23:45:38] ANSI_COLOR="0;31"
[2026-03-10 23:45:38] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-10 23:45:38] HOME_URL="https://www.centos.org/"
[2026-03-10 23:45:38] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-10 23:45:38] 
[2026-03-10 23:45:38] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-10 23:45:38] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-10 23:45:38] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-10 23:45:38] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-10 23:45:38] 
[2026-03-10 23:45:38] 2026-03-10 22:45:07,811 | INFO     | **************************************
[2026-03-10 23:45:38] 2026-03-10 22:45:08,314 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-10 23:45:38] 2026-03-10 22:45:08,333 | INFO     | sufficient remaining disk space (323518201856 B)
[2026-03-10 23:45:38] 2026-03-10 22:45:08,333 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-10 23:45:38] 2026-03-10 22:45:08,333 | INFO     | current server update state: UPDATING_FINAL
[2026-03-10 23:45:38] 2026-03-10 22:45:08,333 | INFO     | update_server=False
[2026-03-10 23:45:38] 2026-03-10 22:45:08,333 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-10 23:45:38] 2026-03-10 22:45:08,333 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-10 23:45:38] 2026-03-10 22:45:08,333 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-10 23:45:38] 2026-03-10 22:45:08,484 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-10 23:45:38] 2026-03-10 22:45:09,128 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-10 23:45:38] 2026-03-10 22:45:09,128 | INFO     | aborting loop
[2026-03-10 23:45:38] 2026-03-10 22:45:09,156 | INFO     | all data control threads have been joined
[2026-03-10 23:45:38] 2026-03-10 22:45:09,282 | INFO     | all job control threads have been joined
[2026-03-10 23:45:38] 2026-03-10 22:45:09,339 | INFO     | [job] retrieve thread has finished
[2026-03-10 23:45:38] 2026-03-10 22:45:09,339 | INFO     | [job] queue monitor thread has finished
[2026-03-10 23:45:38] 2026-03-10 22:45:09,396 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-10 23:45:38] 2026-03-10 22:45:09,415 | INFO     | [data] copytool_in thread has finished
[2026-03-10 23:45:38] 2026-03-10 22:45:09,586 | INFO     | [payload] execute_payloads thread has finished
[2026-03-10 23:45:38] 2026-03-10 22:45:09,760 | INFO     | all payload control threads have been joined
[2026-03-10 23:45:38] 2026-03-10 22:45:09,768 | INFO     | [payload] failed_post thread has finished
[2026-03-10 23:45:38] 2026-03-10 22:45:10,134 | INFO     | [job] job monitor thread has finished
[2026-03-10 23:45:38] 2026-03-10 22:45:10,162 | INFO     | [data] control thread has finished
[2026-03-10 23:45:38] 2026-03-10 22:45:10,288 | INFO     | [job] control thread has finished
[2026-03-10 23:45:38] 2026-03-10 22:45:10,490 | INFO     | [data] copytool_out thread has finished
[2026-03-10 23:45:38] 2026-03-10 22:45:10,615 | INFO     | [job] validate thread has finished
[2026-03-10 23:45:38] 2026-03-10 22:45:10,639 | INFO     | [payload] validate_post thread has finished
[2026-03-10 23:45:38] 2026-03-10 22:45:10,702 | INFO     | [job] create_data_payload thread has finished
[2026-03-10 23:45:38] 2026-03-10 22:45:10,766 | INFO     | [payload] control thread has finished
[2026-03-10 23:45:38] 2026-03-10 22:45:10,796 | INFO     | [payload] validate_pre thread has finished
[2026-03-10 23:45:38] 2026-03-10 22:45:12,340 | INFO     | [data] queue_monitor thread has finished
[2026-03-10 23:45:38] 2026-03-10 22:45:23,753 | INFO     | [monitor] cgroup control has ended
[2026-03-10 23:45:38] 2026-03-10 22:45:24,394 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140467093931840)>', '<ExcThread(monitor, started 140466729232128)>']
[2026-03-10 23:45:38] 2026-03-10 22:45:29,419 | INFO     | all workflow threads have been joined
[2026-03-10 23:45:38] 2026-03-10 22:45:29,419 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-10 23:45:38] 2026-03-10 22:45:29,420 | INFO     | traces error code: 0
[2026-03-10 23:45:38] 2026-03-10 22:45:29,420 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-10 23:45:38] 2026-03-10 22:45:38,814 | INFO     | PID=427475 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-10 23:45:38] 2026-03-10 22:45:38,814 | INFO     | found 0 job(s) in 20 queues
[2026-03-10 23:45:38] 2026-03-10 22:45:38,814 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-10 23:45:38] 2026-03-10 22:45:38,815 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-10 23:45:38] 2026-03-10 22:45:38,815 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-10 23:45:38] 2026-03-10 22:45:38,815 | INFO     | [monitor] control thread has ended
[2026-03-10 23:45:38] 2026-03-10 22:45:38,886 [wrapper] ==== pilot stdout END ====
[2026-03-10 23:45:38] 2026-03-10 22:45:38,889 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-10 23:45:38] 2026-03-10 22:45:38,893 [wrapper] pilotpid: 427475
[2026-03-10 23:45:38] 2026-03-10 22:45:38,897 [wrapper] Pilot exit status: 0
[2026-03-10 23:45:38] 2026-03-10 22:45:38,907 [wrapper] pandaids: 7042567927
[2026-03-10 23:45:38] 2026-03-10 22:45:38,927 [wrapper] cleanup supervisor_pilot  427481 427476
[2026-03-10 23:45:38] 2026-03-10 22:45:38,931 [wrapper] Test setup, not cleaning
[2026-03-10 23:45:38] 2026-03-10 22:45:38,935 [wrapper] apfmon messages muted
[2026-03-10 23:45:38] 2026-03-10 22:45:38,938 [wrapper] ==== wrapper stdout END ====
[2026-03-10 23:45:38] 2026-03-10 22:45:38,942 [wrapper] ==== wrapper stderr END ====
[2026-03-10 23:45:38]  *** Error codes and diagnostics ***
[2026-03-10 23:45:38]     "exeErrorCode": 0,
[2026-03-10 23:45:38]     "exeErrorDiag": "",
[2026-03-10 23:45:38]     "pilotErrorCode": 1305,
[2026-03-10 23:45:38]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: EVNTtoHITS got a SIGSEGV signal (exit code 139)",
[2026-03-10 23:45:38]  *** Listing of results directory ***
[2026-03-10 23:45:38] total 435136
[2026-03-10 23:45:38] -rw-r--r-- 1 boinc boinc      5111 Mar 10 13:15 queuedata.json
[2026-03-10 23:45:38] -rw-r--r-- 1 boinc boinc    584627 Mar 10 13:15 pilot3.tar.gz
[2026-03-10 23:45:38] -rwx------ 1 boinc boinc     36322 Mar 10 13:15 runpilot2-wrapper.sh
[2026-03-10 23:45:38] -rw-r--r-- 1 boinc boinc       100 Mar 10 23:41 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-10 23:45:38] -rwxr-xr-x 1 boinc boinc      7986 Mar 10 23:41 run_atlas
[2026-03-10 23:45:38] -rw-r--r-- 1 boinc boinc       105 Mar 10 23:41 job.xml
[2026-03-10 23:45:38] -rw-r--r-- 2 boinc boinc 441376274 Mar 10 23:41 EVNT.46701403._001063.pool.root.1
[2026-03-10 23:45:38] drwxrwx--x 2 boinc boinc      4096 Mar 10 23:41 shared
[2026-03-10 23:45:38] -rw-r--r-- 2 boinc boinc    597956 Mar 10 23:41 input.tar.gz
[2026-03-10 23:45:38] -rw-r--r-- 2 boinc boinc     15845 Mar 10 23:41 start_atlas.sh
[2026-03-10 23:45:38] -rw-r--r-- 1 boinc boinc         0 Mar 10 23:41 boinc_setup_complete
[2026-03-10 23:45:38] -rw-r--r-- 1 boinc boinc      6377 Mar 10 23:41 init_data.xml
[2026-03-10 23:45:38] -rw-r--r-- 1 boinc boinc         0 Mar 10 23:41 boinc_lockfile
[2026-03-10 23:45:38] -rw-r--r-- 1 boinc boinc      2561 Mar 10 23:41 pandaJob.out
[2026-03-10 23:45:38] -rw------- 1 boinc boinc   1006644 Mar 10 23:41 agis_schedconf.cvmfs.json
[2026-03-10 23:45:38] -rw------- 1 boinc boinc   1511578 Mar 10 23:41 agis_ddmendpoints.agis.ALL.json
[2026-03-10 23:45:38] -rw------- 1 boinc boinc       420 Mar 10 23:41 workernode_map.json
[2026-03-10 23:45:38] drwx------ 5 boinc boinc      4096 Mar 10 23:41 pilot3
[2026-03-10 23:45:38] -rw-r--r-- 1 boinc boinc       525 Mar 10 23:42 boinc_task_state.xml
[2026-03-10 23:45:38] -rw------- 1 boinc boinc       994 Mar 10 23:43 memory_monitor_summary.json
[2026-03-10 23:45:38] -rw------- 1 boinc boinc     51486 Mar 10 23:43 log.48955010._023074.job.log.tgz.1
[2026-03-10 23:45:38] -rw------- 1 boinc boinc      7019 Mar 10 23:45 heartbeat.json
[2026-03-10 23:45:38] -rw-r--r-- 1 boinc boinc      8192 Mar 10 23:45 boinc_mmap_file
[2026-03-10 23:45:38] -rw-r--r-- 1 boinc boinc        23 Mar 10 23:45 wrapper_checkpoint.txt
[2026-03-10 23:45:38] -rw------- 1 boinc boinc       746 Mar 10 23:45 pilotlog.txt
[2026-03-10 23:45:38] -rw------- 1 boinc boinc        95 Mar 10 23:45 pilot_heartbeat.json
[2026-03-10 23:45:38] -rw------- 1 boinc boinc     90743 Mar 10 23:45 log.48955010._023074.job.log.1
[2026-03-10 23:45:38] -rw------- 1 boinc boinc       188 Mar 10 23:45 output.list
[2026-03-10 23:45:38] -rw-r--r-- 1 boinc boinc       620 Mar 10 23:45 runtime_log
[2026-03-10 23:45:38] -rw------- 1 boinc boinc    163840 Mar 10 23:45 result.tar.gz
[2026-03-10 23:45:38] -rw-r--r-- 1 boinc boinc      8748 Mar 10 23:45 runtime_log.err
[2026-03-10 23:45:38] -rw------- 1 boinc boinc       649 Mar 10 23:45 1xrNDmjABK9n9Rq4apOajLDm4fhM0noT9bVooX4SDmaFdLDm4gDyHm.diag
[2026-03-10 23:45:38] -rw-r--r-- 1 boinc boinc      9616 Mar 10 23:45 stderr.txt
[2026-03-10 23:45:39] No HITS result produced
[2026-03-10 23:45:39]  *** Contents of shared directory: ***
[2026-03-10 23:45:39] total 431796
[2026-03-10 23:45:39] -rw-r--r-- 2 boinc boinc 441376274 Mar 10 23:41 ATLAS.root_0
[2026-03-10 23:45:39] -rw-r--r-- 2 boinc boinc    597956 Mar 10 23:41 input.tar.gz
[2026-03-10 23:45:39] -rw-r--r-- 2 boinc boinc     15845 Mar 10 23:41 start_atlas.sh
[2026-03-10 23:45:39] -rw------- 1 boinc boinc    163840 Mar 10 23:45 result.tar.gz
23:45:40 (423679): run_atlas exited; CPU time 22.884143
23:45:40 (423679): called boinc_finish(0)

</stderr_txt>
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