Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
23:33:47 (410239): wrapper (7.7.26015): starting
23:33:47 (410239): wrapper: running run_atlas (--nthreads 4)
[2026-03-10 23:33:47] Arguments: --nthreads 4
[2026-03-10 23:33:47] Threads: 4
[2026-03-10 23:33:47] Checking for CVMFS
[2026-03-10 23:33:47] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-10 23:33:47] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-10 23:33:47] Running cvmfs_config stat atlas.cern.ch
[2026-03-10 23:33:48] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-10 23:33:48] 2.9.2.0 3071 1871 93288 157132 0 50 34817947 36864000 0 130560 0 1164406 99.987 73014 13231 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-10 23:33:48] CVMFS is ok
[2026-03-10 23:33:48] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-10 23:33:48] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-10 23:33:48] Further information can be found at the LHC@home message board.
[2026-03-10 23:33:48] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-10 23:33:48] Checking for apptainer binary...
[2026-03-10 23:33:48] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-10 23:33:48] Running /usr/bin/apptainer --version
[2026-03-10 23:33:48] apptainer version 1.4.1-1.1
[2026-03-10 23:33:48] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-10 23:33:48] thA373a
[2026-03-10 23:33:48] apptainer works
[2026-03-10 23:33:48] Set ATHENA_PROC_NUMBER=4
[2026-03-10 23:33:48] Set ATHENA_CORE_NUMBER=4
[2026-03-10 23:33:48] Starting ATLAS job with PandaID=7035989428
[2026-03-10 23:33:48] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-10 23:41:05]  *** The last 200 lines of the pilot log: ***
[2026-03-10 23:41:05] 2026-03-10 22:40:26,010 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-10 23:41:05] 2026-03-10 22:40:26,058 | INFO     | [data] control thread has finished
[2026-03-10 23:41:05] 2026-03-10 22:40:26,158 | INFO     | [payload] control thread has finished
[2026-03-10 23:41:05] 2026-03-10 22:40:26,548 | INFO     | [job] control thread has finished
[2026-03-10 23:41:05] 2026-03-10 22:40:26,630 | INFO     | [payload] validate_post thread has finished
[2026-03-10 23:41:05] 2026-03-10 22:40:26,656 | INFO     | [data] copytool_out thread has finished
[2026-03-10 23:41:05] 2026-03-10 22:40:26,790 | INFO     | [payload] execute_payloads thread has finished
[2026-03-10 23:41:05] 2026-03-10 22:40:27,065 | INFO     | [job] validate thread has finished
[2026-03-10 23:41:05] 2026-03-10 22:40:27,155 | INFO     | [job] create_data_payload thread has finished
[2026-03-10 23:41:05] 2026-03-10 22:40:27,170 | INFO     | [payload] failed_post thread has finished
[2026-03-10 23:41:05] 2026-03-10 22:40:27,608 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-10 23:41:05] 2026-03-10 22:40:28,614 | INFO     | [job] queue monitor thread has finished
[2026-03-10 23:41:05] 2026-03-10 22:40:30,017 | INFO     | [data] queue_monitor thread has finished
[2026-03-10 23:41:05] 2026-03-10 22:40:55,286 | INFO     | PID=414352 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-10 23:41:05] 2026-03-10 22:40:55,286 | INFO     | found 0 job(s) in 20 queues
[2026-03-10 23:41:05] 2026-03-10 22:40:55,286 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-10 23:41:05] 2026-03-10 22:40:55,286 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-10 23:41:05] 2026-03-10 22:40:59,736 | INFO     | [monitor] cgroup control has ended
[2026-03-10 23:41:05] 2026-03-10 22:41:00,537 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139749314303808)>', '<ExcThread(monitor, started 139748236588800)>']
[2026-03-10 23:41:05] 2026-03-10 22:41:01,318 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-10 23:41:05] 2026-03-10 22:41:01,318 | INFO     | [monitor] control thread has ended
[2026-03-10 23:41:05] 2026-03-10 22:41:05,563 | INFO     | all workflow threads have been joined
[2026-03-10 23:41:05] 2026-03-10 22:41:05,563 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-10 23:41:05] 2026-03-10 22:41:05,563 | INFO     | traces error code: 0
[2026-03-10 23:41:05] 2026-03-10 22:41:05,563 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-10 23:41:05] 2026-03-10 22:41:05,640 [wrapper] ==== pilot stdout END ====
[2026-03-10 23:41:05] 2026-03-10 22:41:05,645 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-10 23:41:05] 2026-03-10 22:41:05,649 [wrapper] pilotpid: 414352
[2026-03-10 23:41:05] 2026-03-10 22:41:05,653 [wrapper] Pilot exit status: 0
[2026-03-10 23:41:05] 2026-03-10 22:41:05,664 [wrapper] pandaids: 7035989428
[2026-03-10 23:41:05] 2026-03-10 22:41:05,684 [wrapper] cleanup supervisor_pilot  414358 414353
[2026-03-10 23:41:05] 2026-03-10 22:41:05,688 [wrapper] Test setup, not cleaning
[2026-03-10 23:41:05] 2026-03-10 22:41:05,692 [wrapper] apfmon messages muted
[2026-03-10 23:41:05] 2026-03-10 22:41:05,695 [wrapper] ==== wrapper stdout END ====
[2026-03-10 23:41:05] 2026-03-10 22:41:05,699 [wrapper] ==== wrapper stderr END ====
[2026-03-10 23:41:05]  *** Error codes and diagnostics ***
[2026-03-10 23:41:05]     "exeErrorCode": 0,
[2026-03-10 23:41:05]     "exeErrorDiag": "",
[2026-03-10 23:41:05]     "pilotErrorCode": 1305,
[2026-03-10 23:41:05]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: EVNTtoHITS got a SIGSEGV signal (exit code 139); Possible memory leak: 'pss' slope: 7558.42 KB/s",
[2026-03-10 23:41:05]  *** Listing of results directory ***
[2026-03-10 23:41:05] total 258512
[2026-03-10 23:41:05] -rw-r--r-- 1 boinc boinc    584627 Mar  2 13:41 pilot3.tar.gz
[2026-03-10 23:41:05] -rwx------ 1 boinc boinc     36322 Mar  2 13:45 runpilot2-wrapper.sh
[2026-03-10 23:41:05] -rw-r--r-- 1 boinc boinc      5111 Mar  2 13:46 queuedata.json
[2026-03-10 23:41:05] -rw-r--r-- 1 boinc boinc       100 Mar 10 23:33 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-10 23:41:05] -rwxr-xr-x 1 boinc boinc      7986 Mar 10 23:33 run_atlas
[2026-03-10 23:41:05] -rw-r--r-- 1 boinc boinc       105 Mar 10 23:33 job.xml
[2026-03-10 23:41:05] -rw-r--r-- 2 boinc boinc 260321011 Mar 10 23:33 EVNT.48454523._000002.pool.root.1
[2026-03-10 23:41:05] -rw-r--r-- 2 boinc boinc    597976 Mar 10 23:33 input.tar.gz
[2026-03-10 23:41:05] -rw-r--r-- 2 boinc boinc     15845 Mar 10 23:33 start_atlas.sh
[2026-03-10 23:41:05] drwxrwx--x 2 boinc boinc      4096 Mar 10 23:33 shared
[2026-03-10 23:41:05] -rw-r--r-- 1 boinc boinc         0 Mar 10 23:33 boinc_setup_complete
[2026-03-10 23:41:05] -rw-r--r-- 1 boinc boinc      6377 Mar 10 23:33 init_data.xml
[2026-03-10 23:41:05] -rw-r--r-- 1 boinc boinc         0 Mar 10 23:33 boinc_lockfile
[2026-03-10 23:41:05] -rw-r--r-- 1 boinc boinc      2624 Mar 10 23:33 pandaJob.out
[2026-03-10 23:41:05] -rw------- 1 boinc boinc   1006644 Mar 10 23:33 agis_schedconf.cvmfs.json
[2026-03-10 23:41:05] -rw------- 1 boinc boinc   1511578 Mar 10 23:33 agis_ddmendpoints.agis.ALL.json
[2026-03-10 23:41:05] -rw------- 1 boinc boinc       428 Mar 10 23:33 workernode_map.json
[2026-03-10 23:41:05] drwx------ 5 boinc boinc      4096 Mar 10 23:33 pilot3
[2026-03-10 23:41:05] -rw-r--r-- 1 boinc boinc       526 Mar 10 23:38 boinc_task_state.xml
[2026-03-10 23:41:05] -rw------- 1 boinc boinc      1003 Mar 10 23:38 memory_monitor_summary.json
[2026-03-10 23:41:05] -rw------- 1 boinc boinc    128503 Mar 10 23:38 log.48847806._000045.job.log.tgz.1
[2026-03-10 23:41:05] -rw------- 1 boinc boinc        95 Mar 10 23:39 pilot_heartbeat.json
[2026-03-10 23:41:05] -rw------- 1 boinc boinc      7198 Mar 10 23:40 heartbeat.json
[2026-03-10 23:41:05] -rw-r--r-- 1 boinc boinc        24 Mar 10 23:41 wrapper_checkpoint.txt
[2026-03-10 23:41:05] -rw-r--r-- 1 boinc boinc      8192 Mar 10 23:41 boinc_mmap_file
[2026-03-10 23:41:05] -rw------- 1 boinc boinc      4747 Mar 10 23:41 pilotlog.txt
[2026-03-10 23:41:05] -rw------- 1 boinc boinc    110946 Mar 10 23:41 log.48847806._000045.job.log.1
[2026-03-10 23:41:05] -rw------- 1 boinc boinc       188 Mar 10 23:41 output.list
[2026-03-10 23:41:05] -rw-r--r-- 1 boinc boinc       620 Mar 10 23:41 runtime_log
[2026-03-10 23:41:05] -rw------- 1 boinc boinc    256000 Mar 10 23:41 result.tar.gz
[2026-03-10 23:41:05] -rw------- 1 boinc boinc       650 Mar 10 23:41 vrjMDmFpHH9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmrTDLDmTyD6Un.diag
[2026-03-10 23:41:05] -rw-r--r-- 1 boinc boinc      8748 Mar 10 23:41 runtime_log.err
[2026-03-10 23:41:05] -rw-r--r-- 1 boinc boinc      6284 Mar 10 23:41 stderr.txt
[2026-03-10 23:41:05] No HITS result produced
[2026-03-10 23:41:05]  *** Contents of shared directory: ***
[2026-03-10 23:41:05] total 255076
[2026-03-10 23:41:05] -rw-r--r-- 2 boinc boinc 260321011 Mar 10 23:33 ATLAS.root_0
[2026-03-10 23:41:05] -rw-r--r-- 2 boinc boinc    597976 Mar 10 23:33 input.tar.gz
[2026-03-10 23:41:05] -rw-r--r-- 2 boinc boinc     15845 Mar 10 23:33 start_atlas.sh
[2026-03-10 23:41:05] -rw------- 1 boinc boinc    256000 Mar 10 23:41 result.tar.gz
23:41:07 (410239): run_atlas exited; CPU time 104.978793
23:41:07 (410239): called boinc_finish(0)

</stderr_txt>
]]>

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