Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
00:15:15 (30651): wrapper (7.7.26015): starting
00:15:15 (30651): wrapper: running run_atlas (--nthreads 8)
[2026-03-11 00:15:15] Arguments: --nthreads 8
[2026-03-11 00:15:15] Threads: 8
[2026-03-11 00:15:15] Checking for CVMFS
[2026-03-11 00:15:15] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-11 00:15:16] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-11 00:15:16] Running cvmfs_config stat atlas.cern.ch
[2026-03-11 00:15:18] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-11 00:15:18] 2.11.2.0 18312 122461 112480 157134 1 94 16814110 25165825 1081 130560 161 36316345 99.830 28355442 1003 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-03-11 00:15:18] CVMFS is ok
[2026-03-11 00:15:18] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-11 00:15:18] Checking for apptainer binary...
[2026-03-11 00:15:18] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-11 00:15:18] Running /usr/bin/apptainer --version
[2026-03-11 00:15:18] apptainer version 1.3.2-1.el7
[2026-03-11 00:15:18] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-11 00:15:28] cg-vwn442.simple-grid.lan
[2026-03-11 00:15:28] apptainer works
[2026-03-11 00:15:28] Set ATHENA_PROC_NUMBER=8
[2026-03-11 00:15:28] Set ATHENA_CORE_NUMBER=8
[2026-03-11 00:15:29] Starting ATLAS job with PandaID=7048762989
[2026-03-11 00:15:29] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-11 04:32:34]  *** The last 200 lines of the pilot log: ***
[2026-03-11 04:32:34] 2026-03-11 03:31:36,030 | INFO     | total number of processed events: 400 (read)
[2026-03-11 04:32:34] 2026-03-11 03:31:36,032 | INFO     | using path: /var/lib/boinc/slots/7/PanDA_Pilot-7048762989/memory_monitor_summary.json (trf name=prmon)
[2026-03-11 04:32:34] 2026-03-11 03:31:36,033 | INFO     | extracted standard info from prmon json
[2026-03-11 04:32:34] 2026-03-11 03:31:36,033 | INFO     | extracted standard memory fields from prmon json
[2026-03-11 04:32:34] 2026-03-11 03:31:36,033 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-11 04:32:34] 2026-03-11 03:31:36,033 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-11 04:32:34] 2026-03-11 03:31:36,033 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-11 04:32:34] 2026-03-11 03:31:36,039 | INFO     | fitting pss+swap vs Time
[2026-03-11 04:32:34] 2026-03-11 03:31:36,039 | INFO     | sum of square deviations: 4340323240.0
[2026-03-11 04:32:34] 2026-03-11 03:31:36,041 | INFO     | sum of deviations: 82104426871.0
[2026-03-11 04:32:34] 2026-03-11 03:31:36,042 | INFO     | mean x: 1773192547.0
[2026-03-11 04:32:34] 2026-03-11 03:31:36,042 | INFO     | mean y: 2476474.543568465
[2026-03-11 04:32:34] 2026-03-11 03:31:36,042 | INFO     | intersect: -33540407258.549946
[2026-03-11 04:32:34] 2026-03-11 03:31:36,042 | INFO     | chi2: 7.964098727289821
[2026-03-11 04:32:34] 2026-03-11 03:31:36,043 | INFO     | sum of square deviations: 4075741535.0
[2026-03-11 04:32:34] 2026-03-11 03:31:36,045 | INFO     | sum of deviations: 96347476752.0
[2026-03-11 04:32:34] 2026-03-11 03:31:36,045 | INFO     | mean x: 1773192394.5
[2026-03-11 04:32:34] 2026-03-11 03:31:36,045 | INFO     | mean y: 2484527.466101695
[2026-03-11 04:32:34] 2026-03-11 03:31:36,046 | INFO     | intersect: -41914455381.21532
[2026-03-11 04:32:34] 2026-03-11 03:31:36,046 | INFO     | chi2: 7.269924705697975
[2026-03-11 04:32:34] 2026-03-11 03:31:36,046 | INFO     | current chi2=7.269924705697975 (change=8.716291012480617 %)
[2026-03-11 04:32:34] 2026-03-11 03:31:36,046 | INFO     | right removable region: 235
[2026-03-11 04:32:34] 2026-03-11 03:31:36,047 | INFO     | sum of square deviations: 4075741535.0
[2026-03-11 04:32:34] 2026-03-11 03:31:36,049 | INFO     | sum of deviations: -603047036.9999962
[2026-03-11 04:32:34] 2026-03-11 03:31:36,049 | INFO     | mean x: 1773192699.5
[2026-03-11 04:32:34] 2026-03-11 03:31:36,049 | INFO     | mean y: 2524107.4322033897
[2026-03-11 04:32:34] 2026-03-11 03:31:36,049 | INFO     | intersect: 264885838.24384567
[2026-03-11 04:32:34] 2026-03-11 03:31:36,050 | INFO     | chi2: 3.2230388663700786
[2026-03-11 04:32:34] 2026-03-11 03:31:36,050 | INFO     | current chi2=3.2230388663700786 (change=59.53040040392773 %)
[2026-03-11 04:32:34] 2026-03-11 03:31:36,050 | INFO     | sum of square deviations: 3822136780.0
[2026-03-11 04:32:34] 2026-03-11 03:31:36,052 | INFO     | sum of deviations: -55220313135.0
[2026-03-11 04:32:34] 2026-03-11 03:31:36,053 | INFO     | mean x: 1773192852.0
[2026-03-11 04:32:34] 2026-03-11 03:31:36,053 | INFO     | mean y: 2556830.212121212
[2026-03-11 04:32:34] 2026-03-11 03:31:36,053 | INFO     | intersect: 25620756850.825645
[2026-03-11 04:32:34] 2026-03-11 03:31:36,053 | INFO     | chi2: 1.0707269438797808
[2026-03-11 04:32:34] 2026-03-11 03:31:36,053 | INFO     | current chi2=1.0707269438797808 (change=66.77896270342906 %)
[2026-03-11 04:32:34] 2026-03-11 03:31:36,054 | INFO     | sum of square deviations: 3579276412.5
[2026-03-11 04:32:34] 2026-03-11 03:31:36,056 | INFO     | sum of deviations: -63309923569.5
[2026-03-11 04:32:34] 2026-03-11 03:31:36,056 | INFO     | mean x: 1773193004.5
[2026-03-11 04:32:34] 2026-03-11 03:31:36,056 | INFO     | mean y: 2561880.3584070797
[2026-03-11 04:32:34] 2026-03-11 03:31:36,056 | INFO     | intersect: 31366642395.854797
[2026-03-11 04:32:34] 2026-03-11 03:31:36,057 | INFO     | chi2: 0.9841656276893888
[2026-03-11 04:32:34] 2026-03-11 03:31:36,057 | INFO     | current chi2=0.9841656276893888 (change=8.08435023375213 %)
[2026-03-11 04:32:34] 2026-03-11 03:31:36,057 | INFO     | left removable region: 30
[2026-03-11 04:32:34] 2026-03-11 03:31:36,057 | INFO     | sum of square deviations: 2671343110.0
[2026-03-11 04:32:34] 2026-03-11 03:31:36,069 | INFO     | sum of deviations: -27336248908.0
[2026-03-11 04:32:34] 2026-03-11 03:31:36,070 | INFO     | mean x: 1773193279.0
[2026-03-11 04:32:34] 2026-03-11 03:31:36,070 | INFO     | mean y: 2558341.0536585366
[2026-03-11 04:32:34] 2026-03-11 03:31:36,070 | INFO     | intersect: 18147907268.820816
[2026-03-11 04:32:34] 2026-03-11 03:31:36,070 | INFO     | chi2: 0.16500778392413396
[2026-03-11 04:32:34] 2026-03-11 03:31:36,070 | INFO     | current memory leak: -10.23 B/s (using 205 data points, chi2=0.17)
[2026-03-11 04:32:34] 2026-03-11 03:31:36,071 | INFO     | could have reported an average CPU frequency of 1999 MHz (12 samples)
[2026-03-11 04:32:34] 2026-03-11 03:31:36,071 | INFO     | ..............................
[2026-03-11 04:32:34] 2026-03-11 03:31:36,072 | INFO     | . Timing measurements:
[2026-03-11 04:32:34] 2026-03-11 03:31:36,072 | INFO     | . get job = 0 s
[2026-03-11 04:32:34] 2026-03-11 03:31:36,072 | INFO     | . initial setup = 128 s
[2026-03-11 04:32:34] 2026-03-11 03:31:36,072 | INFO     | . payload setup = 170 s
[2026-03-11 04:32:34] 2026-03-11 03:31:36,072 | INFO     | . stage-in = 0 s
[2026-03-11 04:32:34] 2026-03-11 03:31:36,072 | INFO     | . payload execution = 14783 s
[2026-03-11 04:32:34] 2026-03-11 03:31:36,072 | INFO     | . stage-out = 4 s
[2026-03-11 04:32:34] 2026-03-11 03:31:36,072 | INFO     | . log creation = 1 s
[2026-03-11 04:32:34] 2026-03-11 03:31:36,072 | INFO     | ..............................
[2026-03-11 04:32:34] 2026-03-11 03:31:36,215 | INFO     | 
[2026-03-11 04:32:34] 2026-03-11 03:31:36,215 | INFO     | job summary report
[2026-03-11 04:32:34] 2026-03-11 03:31:36,215 | INFO     | --------------------------------------------------
[2026-03-11 04:32:34] 2026-03-11 03:31:36,215 | INFO     | PanDA job id: 7048762989
[2026-03-11 04:32:34] 2026-03-11 03:31:36,216 | INFO     | task id: 48958554
[2026-03-11 04:32:34] 2026-03-11 03:31:36,216 | INFO     | errors: (none)
[2026-03-11 04:32:34] 2026-03-11 03:31:36,216 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-11 04:32:34] 2026-03-11 03:31:36,216 | INFO     | pilot state: finished 
[2026-03-11 04:32:34] 2026-03-11 03:31:36,216 | INFO     | transexitcode: 0
[2026-03-11 04:32:34] 2026-03-11 03:31:36,216 | INFO     | exeerrorcode: 0
[2026-03-11 04:32:34] 2026-03-11 03:31:36,216 | INFO     | exeerrordiag: 
[2026-03-11 04:32:34] 2026-03-11 03:31:36,216 | INFO     | exitcode: 0
[2026-03-11 04:32:34] 2026-03-11 03:31:36,216 | INFO     | exitmsg: OK
[2026-03-11 04:32:34] 2026-03-11 03:31:36,216 | INFO     | cpuconsumptiontime: 67711 s
[2026-03-11 04:32:34] 2026-03-11 03:31:36,217 | INFO     | nevents: 400
[2026-03-11 04:32:34] 2026-03-11 03:31:36,217 | INFO     | neventsw: 0
[2026-03-11 04:32:34] 2026-03-11 03:31:36,217 | INFO     | pid: 6695
[2026-03-11 04:32:34] 2026-03-11 03:31:36,217 | INFO     | pgrp: 6695
[2026-03-11 04:32:34] 2026-03-11 03:31:36,217 | INFO     | corecount: 8
[2026-03-11 04:32:34] 2026-03-11 03:31:36,217 | INFO     | event service: False
[2026-03-11 04:32:34] 2026-03-11 03:31:36,217 | INFO     | sizes: {0: 2279079, 1: 2279764, 2: 2280225, 13: 2280225, 14957: 2311160, 14962: 2320158, 14963: 2320342, 14965: 2320536}
[2026-03-11 04:32:34] 2026-03-11 03:31:36,217 | INFO     | --------------------------------------------------
[2026-03-11 04:32:34] 2026-03-11 03:31:36,217 | INFO     | 
[2026-03-11 04:32:34] 2026-03-11 03:31:36,218 | INFO     | executing command: ls -lF /var/lib/boinc/slots/7
[2026-03-11 04:32:34] 2026-03-11 03:31:36,858 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-11 04:32:34] 2026-03-11 03:31:36,859 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-11 04:32:34] 2026-03-11 03:31:36,859 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-11 04:32:34] 2026-03-11 03:31:36,859 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-11 04:32:34] 2026-03-11 03:31:36,859 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-11 04:32:34] 2026-03-11 03:31:36,859 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-11 04:32:34] 2026-03-11 03:31:36,859 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-11 04:32:34] 2026-03-11 03:31:36,859 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-11 04:32:34] 2026-03-11 03:31:36,860 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-11 04:32:34] 2026-03-11 03:31:36,860 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-11 04:32:34] 2026-03-11 03:31:36,860 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-11 04:32:34] 2026-03-11 03:31:36,860 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-11 04:32:34] 2026-03-11 03:31:36,860 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-11 04:32:34] 2026-03-11 03:31:36,860 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-11 04:32:34] 2026-03-11 03:31:36,860 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-11 04:32:34] 2026-03-11 03:31:36,860 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-11 04:32:34] 2026-03-11 03:31:36,860 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-11 04:32:34] 2026-03-11 03:31:36,861 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-11 04:32:34] 2026-03-11 03:31:36,861 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-11 04:32:34] 2026-03-11 03:31:36,861 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-11 04:32:34] 2026-03-11 03:31:36,861 | INFO     | job 7048762989 has completed (purged errors)
[2026-03-11 04:32:34] 2026-03-11 03:31:36,861 | INFO     | overall cleanup function is called
[2026-03-11 04:32:34] 2026-03-11 03:31:37,870 | INFO     | --- collectZombieJob: --- 10, [6695]
[2026-03-11 04:32:34] 2026-03-11 03:31:37,870 | INFO     | zombie collector waiting for pid 6695
[2026-03-11 04:32:34] 2026-03-11 03:31:37,870 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-11 04:32:34] 2026-03-11 03:31:37,871 | INFO     | collected zombie processes
[2026-03-11 04:32:34] 2026-03-11 03:31:37,871 | INFO     | will attempt to kill all subprocesses of pid=6695
[2026-03-11 04:32:34] 2026-03-11 03:31:37,955 | INFO     | process IDs to be killed: [6695] (in reverse order)
[2026-03-11 04:32:34] 2026-03-11 03:31:38,868 | WARNING  | found no corresponding commands to process id(s)
[2026-03-11 04:32:34] 2026-03-11 03:31:38,868 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-11 04:32:34] 2026-03-11 03:31:38,870 | INFO     | did not find any defunct processes belonging to 6695
[2026-03-11 04:32:34] 2026-03-11 03:31:38,872 | INFO     | did not find any defunct processes belonging to 6695
[2026-03-11 04:32:34] 2026-03-11 03:31:38,872 | INFO     | ready for new job
[2026-03-11 04:32:34] 2026-03-11 03:31:38,872 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-11 04:32:34] 2026-03-11 03:31:38,875 | INFO     | **************************************
[2026-03-11 04:32:34] 2026-03-11 03:31:38,875 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-11 04:32:34] 2026-03-11 03:31:38,875 | INFO     | **************************************
[2026-03-11 04:32:34] 2026-03-11 03:31:38,875 | INFO     | 
[2026-03-11 04:32:34] 2026-03-11 03:31:38,876 | INFO     | pilot is running in a VM
[2026-03-11 04:32:34] 2026-03-11 03:31:38,876 | INFO     | architecture information:
[2026-03-11 04:32:34] 2026-03-11 03:31:38,881 | INFO     | executing command: cat /etc/os-release
[2026-03-11 04:32:34] 2026-03-11 03:31:39,205 | INFO     | cat /etc/os-release:
[2026-03-11 04:32:34] NAME="CentOS Linux"
[2026-03-11 04:32:34] VERSION="7 (Core)"
[2026-03-11 04:32:34] ID="centos"
[2026-03-11 04:32:34] ID_LIKE="rhel fedora"
[2026-03-11 04:32:34] VERSION_ID="7"
[2026-03-11 04:32:34] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-11 04:32:34] ANSI_COLOR="0;31"
[2026-03-11 04:32:34] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-11 04:32:34] HOME_URL="https://www.centos.org/"
[2026-03-11 04:32:34] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-11 04:32:34] 
[2026-03-11 04:32:34] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-11 04:32:34] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-11 04:32:34] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-11 04:32:34] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-11 04:32:34] 
[2026-03-11 04:32:34] 2026-03-11 03:31:39,205 | INFO     | **************************************
[2026-03-11 04:32:34] 2026-03-11 03:31:39,708 | INFO     | executing command: df -mP /var/lib/boinc/slots/7
[2026-03-11 04:32:34] 2026-03-11 03:31:39,996 | INFO     | sufficient remaining disk space (497532534784 B)
[2026-03-11 04:32:34] 2026-03-11 03:31:39,996 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-11 04:32:34] 2026-03-11 03:31:39,996 | INFO     | current server update state: UPDATING_FINAL
[2026-03-11 04:32:34] 2026-03-11 03:31:39,996 | INFO     | update_server=False
[2026-03-11 04:32:34] 2026-03-11 03:31:39,996 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-11 04:32:34] 2026-03-11 03:31:40,031 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-11 04:32:34] 2026-03-11 03:31:40,043 | INFO     | all payload control threads have been joined
[2026-03-11 04:32:34] 2026-03-11 03:31:40,439 | INFO     | all data control threads have been joined
[2026-03-11 04:32:34] 2026-03-11 03:31:40,490 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-03-11 04:32:34] 2026-03-11 03:31:40,490 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-03-11 04:32:34] 2026-03-11 03:31:40,490 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-11 04:32:34] 2026-03-11 03:31:40,491 | INFO     | will abort loop
[2026-03-11 04:32:34] 2026-03-11 03:31:40,517 | INFO     | all job control threads have been joined
[2026-03-11 04:32:34] 2026-03-11 03:31:40,982 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-11 04:32:34] 2026-03-11 03:31:41,002 | INFO     | [job] retrieve thread has finished
[2026-03-11 04:32:34] 2026-03-11 03:31:41,049 | INFO     | [payload] control thread has finished
[2026-03-11 04:32:34] 2026-03-11 03:31:41,105 | INFO     | [payload] execute_payloads thread has finished
[2026-03-11 04:32:34] 2026-03-11 03:31:41,231 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-11 04:32:34] 2026-03-11 03:31:41,239 | INFO     | [job] create_data_payload thread has finished
[2026-03-11 04:32:34] 2026-03-11 03:31:41,445 | INFO     | [data] control thread has finished
[2026-03-11 04:32:34] 2026-03-11 03:31:41,496 | INFO     | [job] job monitor thread has finished
[2026-03-11 04:32:34] 2026-03-11 03:31:41,523 | INFO     | [job] control thread has finished
[2026-03-11 04:32:34] 2026-03-11 03:31:41,626 | INFO     | [payload] failed_post thread has finished
[2026-03-11 04:32:34] 2026-03-11 03:31:41,829 | INFO     | [job] validate thread has finished
[2026-03-11 04:32:34] 2026-03-11 03:31:41,890 | INFO     | [data] copytool_in thread has finished
[2026-03-11 04:32:34] 2026-03-11 03:31:42,040 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-11 04:32:34] 2026-03-11 03:31:42,138 | INFO     | [payload] validate_post thread has finished
[2026-03-11 04:32:34] 2026-03-11 03:31:42,237 | INFO     | [job] queue monitor thread has finished
[2026-03-11 04:32:34] 2026-03-11 03:31:42,270 | INFO     | [payload] validate_pre thread has finished
[2026-03-11 04:32:34] 2026-03-11 03:31:42,989 | INFO     | [data] copytool_out thread has finished
[2026-03-11 04:32:34] 2026-03-11 03:31:44,040 | INFO     | [data] queue_monitor thread has finished
[2026-03-11 04:32:34] 2026-03-11 03:32:08,728 | INFO     | PID=2237 has CPU usage=4.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-03-11 04:32:34] 2026-03-11 03:32:08,728 | INFO     | .. there are 2 such processes running
[2026-03-11 04:32:34] 2026-03-11 03:32:08,729 | INFO     | found 0 job(s) in 20 queues
[2026-03-11 04:32:34] 2026-03-11 03:32:08,729 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-11 04:32:34] 2026-03-11 03:32:08,729 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-11 04:32:34] 2026-03-11 03:32:22,757 | INFO     | [monitor] cgroup control has ended
[2026-03-11 04:32:34] 2026-03-11 03:32:23,782 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140187480692544)>', '<ExcThread(monitor, started 140187011094272)>']
[2026-03-11 04:32:34] 2026-03-11 03:32:23,819 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-11 04:32:34] 2026-03-11 03:32:23,819 | INFO     | [monitor] control thread has ended
[2026-03-11 04:32:34] 2026-03-11 03:32:28,808 | INFO     | all workflow threads have been joined
[2026-03-11 04:32:34] 2026-03-11 03:32:28,808 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-11 04:32:34] 2026-03-11 03:32:28,809 | INFO     | traces error code: 0
[2026-03-11 04:32:34] 2026-03-11 03:32:28,809 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-11 04:32:34] 2026-03-11 03:32:29,246 [wrapper] ==== pilot stdout END ====
[2026-03-11 04:32:34] 2026-03-11 03:32:29,372 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-11 04:32:34] 2026-03-11 03:32:29,432 [wrapper] pilotpid: 2237
[2026-03-11 04:32:34] 2026-03-11 03:32:29,493 [wrapper] Pilot exit status: 0
[2026-03-11 04:32:34] 2026-03-11 03:32:29,994 [wrapper] pandaids: 7048762989
[2026-03-11 04:32:34] 2026-03-11 03:32:30,944 [wrapper] cleanup supervisor_pilot 29043 2238
[2026-03-11 04:32:34] 2026-03-11 03:32:31,022 [wrapper] Test setup, not cleaning
[2026-03-11 04:32:34] 2026-03-11 03:32:31,106 [wrapper] apfmon messages muted
[2026-03-11 04:32:34] 2026-03-11 03:32:31,161 [wrapper] ==== wrapper stdout END ====
[2026-03-11 04:32:34] 2026-03-11 03:32:31,273 [wrapper] ==== wrapper stderr END ====
[2026-03-11 04:32:34]  *** Error codes and diagnostics ***
[2026-03-11 04:32:34]     "exeErrorCode": 0,
[2026-03-11 04:32:34]     "exeErrorDiag": "",
[2026-03-11 04:32:34]     "pilotErrorCode": 0,
[2026-03-11 04:32:34]     "pilotErrorDiag": "",
[2026-03-11 04:32:34]  *** Listing of results directory ***
[2026-03-11 04:32:34] total 481816
[2026-03-11 04:32:34] -rw-r--r--. 1 boinc boinc    584627 Mar 10 12:12 pilot3.tar.gz
[2026-03-11 04:32:34] -rwx------. 1 boinc boinc     36322 Mar 10 12:13 runpilot2-wrapper.sh
[2026-03-11 04:32:34] -rw-r--r--. 1 boinc boinc      5111 Mar 10 12:15 queuedata.json
[2026-03-11 04:32:34] -rw-r--r--. 1 boinc boinc       100 Mar 11 00:15 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-11 04:32:34] -rwxr-xr-x. 1 boinc boinc      7986 Mar 11 00:15 run_atlas
[2026-03-11 04:32:34] -rw-r--r--. 1 boinc boinc       105 Mar 11 00:15 job.xml
[2026-03-11 04:32:34] -rw-r--r--. 1 boinc boinc      6392 Mar 11 00:15 init_data.xml
[2026-03-11 04:32:34] -rw-r--r--. 2 boinc boinc 274799022 Mar 11 00:15 EVNT.48958551._000154.pool.root.1
[2026-03-11 04:32:34] -rw-r--r--. 2 boinc boinc     15845 Mar 11 00:15 start_atlas.sh
[2026-03-11 04:32:34] drwxrwx--x. 2 boinc boinc        68 Mar 11 00:15 shared
[2026-03-11 04:32:34] -rw-r--r--. 2 boinc boinc    597947 Mar 11 00:15 input.tar.gz
[2026-03-11 04:32:34] -rw-r--r--. 1 boinc boinc         0 Mar 11 00:15 boinc_lockfile
[2026-03-11 04:32:34] -rw-r--r--. 1 boinc boinc      2514 Mar 11 00:15 pandaJob.out
[2026-03-11 04:32:34] -rw-------. 1 boinc boinc       415 Mar 11 00:21 workernode_map.json
[2026-03-11 04:32:34] -rw-------. 1 boinc boinc   1006644 Mar 11 00:21 agis_schedconf.cvmfs.json
[2026-03-11 04:32:34] drwx------. 5 boinc boinc      4096 Mar 11 00:21 pilot3
[2026-03-11 04:32:34] -rw-------. 1 boinc boinc 209472332 Mar 11 04:30 HITS.48958554._003907.pool.root.1
[2026-03-11 04:32:34] -rw-r--r--. 1 boinc boinc       531 Mar 11 04:30 boinc_task_state.xml
[2026-03-11 04:32:34] -rw-------. 1 boinc boinc      1023 Mar 11 04:31 memory_monitor_summary.json
[2026-03-11 04:32:34] -rw-------. 1 boinc boinc   1511578 Mar 11 04:31 agis_ddmendpoints.agis.ALL.json
[2026-03-11 04:32:34] -rw-------. 1 boinc boinc    485980 Mar 11 04:31 log.48958554._003907.job.log.tgz.1
[2026-03-11 04:32:34] -rw-------. 1 boinc boinc      6323 Mar 11 04:31 heartbeat.json
[2026-03-11 04:32:34] -rw-------. 1 boinc boinc        95 Mar 11 04:32 pilot_heartbeat.json
[2026-03-11 04:32:34] -rw-r--r--. 1 boinc boinc      8192 Mar 11 04:32 boinc_mmap_file
[2026-03-11 04:32:34] -rw-r--r--. 1 boinc boinc        28 Mar 11 04:32 wrapper_checkpoint.txt
[2026-03-11 04:32:34] -rw-------. 1 boinc boinc      5065 Mar 11 04:32 pilotlog.txt
[2026-03-11 04:32:34] -rw-------. 1 boinc boinc   2108503 Mar 11 04:32 log.48958554._003907.job.log.1
[2026-03-11 04:32:34] -rw-------. 1 boinc boinc       357 Mar 11 04:32 output.list
[2026-03-11 04:32:34] -rw-r--r--. 1 boinc boinc       620 Mar 11 04:32 runtime_log
[2026-03-11 04:32:34] -rw-------. 1 boinc boinc   2611200 Mar 11 04:32 result.tar.gz
[2026-03-11 04:32:34] -rw-r--r--. 1 boinc boinc      8816 Mar 11 04:32 runtime_log.err
[2026-03-11 04:32:34] -rw-------. 1 boinc boinc       656 Mar 11 04:32 LTMODm7CAK9n9Rq4apOajLDm4fhM0noT9bVooX4SDmAAdLDmgEMo1n.diag
[2026-03-11 04:32:34] -rw-r--r--. 1 boinc boinc     20705 Mar 11 04:32 stderr.txt
[2026-03-11 04:32:34] HITS file was successfully produced:
[2026-03-11 04:32:34] -rw-------. 1 boinc boinc 209472332 Mar 11 04:30 shared/HITS.pool.root.1
[2026-03-11 04:32:34]  *** Contents of shared directory: ***
[2026-03-11 04:32:34] total 476076
[2026-03-11 04:32:34] -rw-r--r--. 2 boinc boinc 274799022 Mar 11 00:15 ATLAS.root_0
[2026-03-11 04:32:34] -rw-r--r--. 2 boinc boinc     15845 Mar 11 00:15 start_atlas.sh
[2026-03-11 04:32:34] -rw-r--r--. 2 boinc boinc    597947 Mar 11 00:15 input.tar.gz
[2026-03-11 04:32:34] -rw-------. 1 boinc boinc 209472332 Mar 11 04:30 HITS.pool.root.1
[2026-03-11 04:32:34] -rw-------. 1 boinc boinc   2611200 Mar 11 04:32 result.tar.gz
04:32:36 (30651): run_atlas exited; CPU time 67872.207947
04:32:36 (30651): called boinc_finish(0)

</stderr_txt>
]]>

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