Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
05:20:18 (2876878): wrapper (7.7.26015): starting
05:20:18 (2876878): wrapper: running run_atlas (--nthreads 3)
[2026-03-11 05:20:18] Arguments: --nthreads 3
[2026-03-11 05:20:18] Threads: 3
[2026-03-11 05:20:18] Checking for CVMFS
[2026-03-11 05:20:18] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-11 05:20:20] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-11 05:20:20] Running cvmfs_config stat atlas.cern.ch
[2026-03-11 05:20:20] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-11 05:20:20] 2.9.2.0 37608 19367 93004 157142 1 49 31022178 36864000 0 130560 0 7992570 99.983 728767 13613 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-11 05:20:20] CVMFS is ok
[2026-03-11 05:20:20] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-11 05:20:20] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-11 05:20:20] Further information can be found at the LHC@home message board.
[2026-03-11 05:20:20] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-11 05:20:20] Checking for apptainer binary...
[2026-03-11 05:20:20] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-11 05:20:20] Running /usr/bin/apptainer --version
[2026-03-11 05:20:20] apptainer version 1.4.1-1.1
[2026-03-11 05:20:20] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-11 05:20:20] magicA246
[2026-03-11 05:20:20] apptainer works
[2026-03-11 05:20:20] Set ATHENA_PROC_NUMBER=3
[2026-03-11 05:20:20] Set ATHENA_CORE_NUMBER=3
[2026-03-11 05:20:20] Starting ATLAS job with PandaID=7036254476
[2026-03-11 05:20:20] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-11 06:48:43]  *** The last 200 lines of the pilot log: ***
[2026-03-11 06:48:43] 2026-03-11 05:47:54,158 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-03-11 06:48:43] 2026-03-11 05:47:54,158 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-03-11 06:48:43] 2026-03-11 05:47:54,158 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-11 06:48:43] 2026-03-11 05:47:54,158 | INFO     | will abort loop
[2026-03-11 06:48:43] 2026-03-11 05:47:54,327 | INFO     | all data control threads have been joined
[2026-03-11 06:48:43] 2026-03-11 05:47:54,981 | INFO     | [job] queue monitor thread has finished
[2026-03-11 06:48:43] 2026-03-11 05:47:54,981 | INFO     | [job] retrieve thread has finished
[2026-03-11 06:48:43] 2026-03-11 05:47:55,033 | INFO     | [job] control thread has finished
[2026-03-11 06:48:43] 2026-03-11 05:47:55,109 | INFO     | [payload] failed_post thread has finished
[2026-03-11 06:48:43] 2026-03-11 05:47:55,164 | INFO     | [job] job monitor thread has finished
[2026-03-11 06:48:43] 2026-03-11 05:47:55,182 | INFO     | all payload control threads have been joined
[2026-03-11 06:48:43] 2026-03-11 05:47:55,333 | INFO     | [data] control thread has finished
[2026-03-11 06:48:43] 2026-03-11 05:47:55,502 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-11 06:48:43] 2026-03-11 05:47:55,655 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-11 06:48:43] 2026-03-11 05:47:55,869 | INFO     | [job] validate thread has finished
[2026-03-11 06:48:43] 2026-03-11 05:47:55,879 | INFO     | [payload] execute_payloads thread has finished
[2026-03-11 06:48:43] 2026-03-11 05:47:55,981 | INFO     | [data] copytool_out thread has finished
[2026-03-11 06:48:43] 2026-03-11 05:47:55,985 | INFO     | [job] create_data_payload thread has finished
[2026-03-11 06:48:43] 2026-03-11 05:47:56,033 | INFO     | [payload] validate_pre thread has finished
[2026-03-11 06:48:43] 2026-03-11 05:47:56,188 | INFO     | [payload] control thread has finished
[2026-03-11 06:48:43] 2026-03-11 05:47:56,188 | INFO     | [data] copytool_in thread has finished
[2026-03-11 06:48:43] 2026-03-11 05:47:56,513 | INFO     | [payload] validate_post thread has finished
[2026-03-11 06:48:43] 2026-03-11 05:47:59,662 | INFO     | [data] queue_monitor thread has finished
[2026-03-11 06:48:43] 2026-03-11 05:48:23,970 | INFO     | PID=2880919 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-11 06:48:43] 2026-03-11 05:48:23,970 | INFO     | found 0 job(s) in 20 queues
[2026-03-11 06:48:43] 2026-03-11 05:48:23,970 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-11 06:48:43] 2026-03-11 05:48:23,970 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-11 06:48:43] 2026-03-11 05:48:36,526 | INFO     | [monitor] cgroup control has ended
[2026-03-11 06:48:43] 2026-03-11 05:48:37,846 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139806645409600)>', '<ExcThread(monitor, started 139805849532160)>']
[2026-03-11 06:48:43] 2026-03-11 05:48:38,045 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-11 06:48:43] 2026-03-11 05:48:38,046 | INFO     | [monitor] control thread has ended
[2026-03-11 06:48:43] 2026-03-11 05:48:42,871 | INFO     | all workflow threads have been joined
[2026-03-11 06:48:43] 2026-03-11 05:48:42,872 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-11 06:48:43] 2026-03-11 05:48:42,872 | INFO     | traces error code: 0
[2026-03-11 06:48:43] 2026-03-11 05:48:42,872 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-11 06:48:43] 2026-03-11 05:48:42,926 [wrapper] ==== pilot stdout END ====
[2026-03-11 06:48:43] 2026-03-11 05:48:42,928 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-11 06:48:43] 2026-03-11 05:48:42,931 [wrapper] pilotpid: 2880919
[2026-03-11 06:48:43] 2026-03-11 05:48:42,934 [wrapper] Pilot exit status: 0
[2026-03-11 06:48:43] 2026-03-11 05:48:42,942 [wrapper] pandaids: 7036254476
[2026-03-11 06:48:43] 2026-03-11 05:48:42,960 [wrapper] cleanup supervisor_pilot 2890657 2880920
[2026-03-11 06:48:43] 2026-03-11 05:48:42,962 [wrapper] Test setup, not cleaning
[2026-03-11 06:48:43] 2026-03-11 05:48:42,965 [wrapper] apfmon messages muted
[2026-03-11 06:48:43] 2026-03-11 05:48:42,967 [wrapper] ==== wrapper stdout END ====
[2026-03-11 06:48:43] 2026-03-11 05:48:42,970 [wrapper] ==== wrapper stderr END ====
[2026-03-11 06:48:43]  *** Error codes and diagnostics ***
[2026-03-11 06:48:43]     "exeErrorCode": 0,
[2026-03-11 06:48:43]     "exeErrorDiag": "",
[2026-03-11 06:48:43]     "pilotErrorCode": 0,
[2026-03-11 06:48:43]     "pilotErrorDiag": "",
[2026-03-11 06:48:43]  *** Listing of results directory ***
[2026-03-11 06:48:43] total 485436
[2026-03-11 06:48:43] -rw-r--r-- 1 boinc boinc    584627 Mar  3 09:25 pilot3.tar.gz
[2026-03-11 06:48:43] -rwx------ 1 boinc boinc     36322 Mar  3 10:01 runpilot2-wrapper.sh
[2026-03-11 06:48:43] -rw-r--r-- 1 boinc boinc      5111 Mar  3 10:02 queuedata.json
[2026-03-11 06:48:43] -rw-r--r-- 1 boinc boinc       100 Mar 11 05:20 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-11 06:48:43] -rwxr-xr-x 1 boinc boinc      7986 Mar 11 05:20 run_atlas
[2026-03-11 06:48:43] -rw-r--r-- 1 boinc boinc       105 Mar 11 05:20 job.xml
[2026-03-11 06:48:43] -rw-r--r-- 2 boinc boinc 282715579 Mar 11 05:20 EVNT.48343768._000101.pool.root.1
[2026-03-11 06:48:43] -rw-r--r-- 2 boinc boinc    597959 Mar 11 05:20 input.tar.gz
[2026-03-11 06:48:43] -rw-r--r-- 2 boinc boinc     15845 Mar 11 05:20 start_atlas.sh
[2026-03-11 06:48:43] drwxrwx--x 2 boinc boinc      4096 Mar 11 05:20 shared
[2026-03-11 06:48:43] -rw-r--r-- 1 boinc boinc         0 Mar 11 05:20 boinc_setup_complete
[2026-03-11 06:48:43] -rw-r--r-- 1 boinc boinc      6447 Mar 11 05:20 init_data.xml
[2026-03-11 06:48:43] -rw-r--r-- 1 boinc boinc         0 Mar 11 05:20 boinc_lockfile
[2026-03-11 06:48:43] -rw-r--r-- 1 boinc boinc      2564 Mar 11 05:20 pandaJob.out
[2026-03-11 06:48:43] -rw------- 1 boinc boinc   1006644 Mar 11 05:20 agis_schedconf.cvmfs.json
[2026-03-11 06:48:43] -rw------- 1 boinc boinc   1511578 Mar 11 05:20 agis_ddmendpoints.agis.ALL.json
[2026-03-11 06:48:43] -rw------- 1 boinc boinc       426 Mar 11 05:20 workernode_map.json
[2026-03-11 06:48:43] drwx------ 5 boinc boinc      4096 Mar 11 05:20 pilot3
[2026-03-11 06:48:43] -rw------- 1 boinc boinc 208420159 Mar 11 06:47 HITS.48838605._002631.pool.root.1
[2026-03-11 06:48:43] -rw-r--r-- 1 boinc boinc       530 Mar 11 06:47 boinc_task_state.xml
[2026-03-11 06:48:43] -rw------- 1 boinc boinc      1014 Mar 11 06:47 memory_monitor_summary.json
[2026-03-11 06:48:43] -rw------- 1 boinc boinc    251187 Mar 11 06:47 log.48838605._002631.job.log.tgz.1
[2026-03-11 06:48:43] -rw------- 1 boinc boinc      6304 Mar 11 06:47 heartbeat.json
[2026-03-11 06:48:43] -rw-r--r-- 1 boinc boinc        27 Mar 11 06:48 wrapper_checkpoint.txt
[2026-03-11 06:48:43] -rw-r--r-- 1 boinc boinc      8192 Mar 11 06:48 boinc_mmap_file
[2026-03-11 06:48:43] -rw------- 1 boinc boinc        95 Mar 11 06:48 pilot_heartbeat.json
[2026-03-11 06:48:43] -rw------- 1 boinc boinc      4934 Mar 11 06:48 pilotlog.txt
[2026-03-11 06:48:43] -rw------- 1 boinc boinc    765517 Mar 11 06:48 log.48838605._002631.job.log.1
[2026-03-11 06:48:43] -rw------- 1 boinc boinc       357 Mar 11 06:48 output.list
[2026-03-11 06:48:43] -rw-r--r-- 1 boinc boinc       620 Mar 11 06:48 runtime_log
[2026-03-11 06:48:43] -rw------- 1 boinc boinc   1034240 Mar 11 06:48 result.tar.gz
[2026-03-11 06:48:43] -rw-r--r-- 1 boinc boinc      8911 Mar 11 06:48 runtime_log.err
[2026-03-11 06:48:43] -rw------- 1 boinc boinc       660 Mar 11 06:48 o0VLDmdoaH9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmbGGLDm63j4Vo.diag
[2026-03-11 06:48:43] -rw-r--r-- 1 boinc boinc      7070 Mar 11 06:48 stderr.txt
[2026-03-11 06:48:43] HITS file was successfully produced:
[2026-03-11 06:48:43] -rw------- 1 boinc boinc 208420159 Mar 11 06:47 shared/HITS.pool.root.1
[2026-03-11 06:48:43]  *** Contents of shared directory: ***
[2026-03-11 06:48:43] total 481244
[2026-03-11 06:48:43] -rw-r--r-- 2 boinc boinc 282715579 Mar 11 05:20 ATLAS.root_0
[2026-03-11 06:48:43] -rw-r--r-- 2 boinc boinc    597959 Mar 11 05:20 input.tar.gz
[2026-03-11 06:48:43] -rw-r--r-- 2 boinc boinc     15845 Mar 11 05:20 start_atlas.sh
[2026-03-11 06:48:43] -rw------- 1 boinc boinc 208420159 Mar 11 06:47 HITS.pool.root.1
[2026-03-11 06:48:43] -rw------- 1 boinc boinc   1034240 Mar 11 06:48 result.tar.gz
06:48:44 (2876878): run_atlas exited; CPU time 14960.035652
06:48:44 (2876878): called boinc_finish(0)

</stderr_txt>
]]>

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