Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
01:49:45 (2169675): wrapper (7.7.26015): starting
01:49:45 (2169675): wrapper: running run_atlas (--nthreads 2)
[2026-03-11 01:49:45] Arguments: --nthreads 2
[2026-03-11 01:49:45] Threads: 2
[2026-03-11 01:49:45] Checking for CVMFS
[2026-03-11 01:49:45] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-11 01:49:45] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-11 01:49:45] Running cvmfs_config stat atlas.cern.ch
[2026-03-11 01:49:45] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-11 01:49:45] 2.9.2.0 1900224 2322 58000 157136 3 50 30124368 36864000 0 130560 0 726650 99.979 88919 14832 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-11 01:49:45] CVMFS is ok
[2026-03-11 01:49:45] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-11 01:49:45] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-11 01:49:45] Further information can be found at the LHC@home message board.
[2026-03-11 01:49:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-11 01:49:45] Checking for apptainer binary...
[2026-03-11 01:49:45] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-11 01:49:45] Running /usr/bin/apptainer --version
[2026-03-11 01:49:45] apptainer version 1.4.1-1.1
[2026-03-11 01:49:45] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-11 01:49:45] thA310
[2026-03-11 01:49:45] apptainer works
[2026-03-11 01:49:45] Set ATHENA_PROC_NUMBER=2
[2026-03-11 01:49:45] Set ATHENA_CORE_NUMBER=2
[2026-03-11 01:49:45] Starting ATLAS job with PandaID=7035978539
[2026-03-11 01:49:45] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-11 04:18:24]  *** The last 200 lines of the pilot log: ***
[2026-03-11 04:18:24] 2026-03-11 03:17:27,971 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-11 04:18:24] 2026-03-11 03:17:27,971 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-11 04:18:24] 2026-03-11 03:17:27,971 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-11 04:18:24] 2026-03-11 03:17:27,971 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-11 04:18:24] 2026-03-11 03:17:27,971 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-11 04:18:24] 2026-03-11 03:17:27,971 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-11 04:18:24] 2026-03-11 03:17:27,971 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-11 04:18:24] 2026-03-11 03:17:27,971 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-11 04:18:24] 2026-03-11 03:17:27,971 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-11 04:18:24] 2026-03-11 03:17:27,971 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-11 04:18:24] 2026-03-11 03:17:27,971 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-11 04:18:24] 2026-03-11 03:17:27,971 | INFO     | job 7035978539 has completed (purged errors)
[2026-03-11 04:18:24] 2026-03-11 03:17:27,972 | INFO     | overall cleanup function is called
[2026-03-11 04:18:24] 2026-03-11 03:17:28,978 | INFO     | --- collectZombieJob: --- 10, [2178116]
[2026-03-11 04:18:24] 2026-03-11 03:17:28,978 | INFO     | zombie collector waiting for pid 2178116
[2026-03-11 04:18:24] 2026-03-11 03:17:28,978 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-11 04:18:24] 2026-03-11 03:17:28,979 | INFO     | collected zombie processes
[2026-03-11 04:18:24] 2026-03-11 03:17:28,979 | INFO     | will attempt to kill all subprocesses of pid=2178116
[2026-03-11 04:18:24] 2026-03-11 03:17:29,015 | INFO     | process IDs to be killed: [2178116] (in reverse order)
[2026-03-11 04:18:24] 2026-03-11 03:17:29,038 | WARNING  | found no corresponding commands to process id(s)
[2026-03-11 04:18:24] 2026-03-11 03:17:29,038 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-11 04:18:24] 2026-03-11 03:17:29,039 | INFO     | did not find any defunct processes belonging to 2178116
[2026-03-11 04:18:24] 2026-03-11 03:17:29,040 | INFO     | did not find any defunct processes belonging to 2178116
[2026-03-11 04:18:24] 2026-03-11 03:17:29,040 | INFO     | ready for new job
[2026-03-11 04:18:24] 2026-03-11 03:17:29,040 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-11 04:18:24] 2026-03-11 03:17:29,040 | INFO     | **************************************
[2026-03-11 04:18:24] 2026-03-11 03:17:29,041 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-11 04:18:24] 2026-03-11 03:17:29,041 | INFO     | **************************************
[2026-03-11 04:18:24] 2026-03-11 03:17:29,041 | INFO     | 
[2026-03-11 04:18:24] 2026-03-11 03:17:29,041 | INFO     | architecture information:
[2026-03-11 04:18:24] 2026-03-11 03:17:29,041 | INFO     | executing command: cat /etc/os-release
[2026-03-11 04:18:24] 2026-03-11 03:17:29,050 | INFO     | cat /etc/os-release:
[2026-03-11 04:18:24] NAME="CentOS Linux"
[2026-03-11 04:18:24] VERSION="7 (Core)"
[2026-03-11 04:18:24] ID="centos"
[2026-03-11 04:18:24] ID_LIKE="rhel fedora"
[2026-03-11 04:18:24] VERSION_ID="7"
[2026-03-11 04:18:24] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-11 04:18:24] ANSI_COLOR="0;31"
[2026-03-11 04:18:24] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-11 04:18:24] HOME_URL="https://www.centos.org/"
[2026-03-11 04:18:24] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-11 04:18:24] 
[2026-03-11 04:18:24] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-11 04:18:24] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-11 04:18:24] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-11 04:18:24] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-11 04:18:24] 
[2026-03-11 04:18:24] 2026-03-11 03:17:29,050 | INFO     | **************************************
[2026-03-11 04:18:24] 2026-03-11 03:17:29,553 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-11 04:18:24] 2026-03-11 03:17:29,566 | INFO     | sufficient remaining disk space (493575208960 B)
[2026-03-11 04:18:24] 2026-03-11 03:17:29,566 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-11 04:18:24] 2026-03-11 03:17:29,566 | INFO     | current server update state: UPDATING_FINAL
[2026-03-11 04:18:24] 2026-03-11 03:17:29,566 | INFO     | update_server=False
[2026-03-11 04:18:24] 2026-03-11 03:17:29,566 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-11 04:18:24] 2026-03-11 03:17:29,566 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-11 04:18:24] 2026-03-11 03:17:29,567 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-11 04:18:24] 2026-03-11 03:17:29,768 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-11 04:18:24] 2026-03-11 03:17:30,090 | INFO     | all data control threads have been joined
[2026-03-11 04:18:24] 2026-03-11 03:17:30,572 | INFO     | [job] retrieve thread has finished
[2026-03-11 04:18:24] 2026-03-11 03:17:30,572 | INFO     | [job] queue monitor thread has finished
[2026-03-11 04:18:24] 2026-03-11 03:17:30,666 | INFO     | [payload] validate_post thread has finished
[2026-03-11 04:18:24] 2026-03-11 03:17:30,886 | INFO     | all payload control threads have been joined
[2026-03-11 04:18:24] 2026-03-11 03:17:30,944 | INFO     | [job] create_data_payload thread has finished
[2026-03-11 04:18:24] 2026-03-11 03:17:30,970 | INFO     | [payload] failed_post thread has finished
[2026-03-11 04:18:24] 2026-03-11 03:17:31,064 | INFO     | [job] validate thread has finished
[2026-03-11 04:18:24] 2026-03-11 03:17:31,096 | INFO     | [data] control thread has finished
[2026-03-11 04:18:24] 2026-03-11 03:17:31,140 | INFO     | [data] copytool_in thread has finished
[2026-03-11 04:18:24] 2026-03-11 03:17:31,189 | INFO     | [payload] validate_pre thread has finished
[2026-03-11 04:18:24] 2026-03-11 03:17:31,219 | INFO     | all job control threads have been joined
[2026-03-11 04:18:24] 2026-03-11 03:17:31,774 | INFO     | [data] copytool_out thread has finished
[2026-03-11 04:18:24] 2026-03-11 03:17:31,892 | INFO     | [payload] control thread has finished
[2026-03-11 04:18:24] 2026-03-11 03:17:31,947 | INFO     | [payload] execute_payloads thread has finished
[2026-03-11 04:18:24] 2026-03-11 03:17:31,971 | INFO     | job.realtimelogging is not enabled
[2026-03-11 04:18:24] 2026-03-11 03:17:32,216 | WARNING  | process 2178116 can no longer be monitored (due to stat problems) - aborting
[2026-03-11 04:18:24] 2026-03-11 03:17:32,224 | INFO     | [job] control thread has finished
[2026-03-11 04:18:24] 2026-03-11 03:17:32,243 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-03-11 04:18:24] 2026-03-11 03:17:32,275 | INFO     | number of running child processes to parent process 2178116: 1
[2026-03-11 04:18:24] 2026-03-11 03:17:32,275 | INFO     | maximum number of monitored processes: 6
[2026-03-11 04:18:24] 2026-03-11 03:17:32,275 | INFO     | aborting job monitoring since job object (job id=7035978539) has expired
[2026-03-11 04:18:24] 2026-03-11 03:17:32,275 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-11 04:18:24] 2026-03-11 03:17:32,275 | INFO     | will abort loop
[2026-03-11 04:18:24] 2026-03-11 03:17:32,977 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-11 04:18:24] 2026-03-11 03:17:33,281 | INFO     | [job] job monitor thread has finished
[2026-03-11 04:18:24] 2026-03-11 03:17:33,573 | INFO     | [data] queue_monitor thread has finished
[2026-03-11 04:18:24] 2026-03-11 03:17:59,756 | INFO     | PID=2173704 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-11 04:18:24] 2026-03-11 03:17:59,756 | INFO     | found 0 job(s) in 20 queues
[2026-03-11 04:18:24] 2026-03-11 03:17:59,757 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-11 04:18:24] 2026-03-11 03:17:59,757 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-11 04:18:24] 2026-03-11 03:18:17,515 | INFO     | [monitor] cgroup control has ended
[2026-03-11 04:18:24] 2026-03-11 03:18:19,217 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140157046744896)>', '<ExcThread(monitor, started 140156182980352)>']
[2026-03-11 04:18:24] 2026-03-11 03:18:19,859 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-11 04:18:24] 2026-03-11 03:18:19,860 | INFO     | [monitor] control thread has ended
[2026-03-11 04:18:24] 2026-03-11 03:18:24,243 | INFO     | all workflow threads have been joined
[2026-03-11 04:18:24] 2026-03-11 03:18:24,243 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-11 04:18:24] 2026-03-11 03:18:24,244 | INFO     | traces error code: 0
[2026-03-11 04:18:24] 2026-03-11 03:18:24,244 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-11 04:18:24] 2026-03-11 03:18:24,287 [wrapper] ==== pilot stdout END ====
[2026-03-11 04:18:24] 2026-03-11 03:18:24,290 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-11 04:18:24] 2026-03-11 03:18:24,292 [wrapper] pilotpid: 2173704
[2026-03-11 04:18:24] 2026-03-11 03:18:24,294 [wrapper] Pilot exit status: 0
[2026-03-11 04:18:24] 2026-03-11 03:18:24,300 [wrapper] pandaids: 7035978539
[2026-03-11 04:18:24] 2026-03-11 03:18:24,315 [wrapper] cleanup supervisor_pilot 2184689 2173705
[2026-03-11 04:18:24] 2026-03-11 03:18:24,317 [wrapper] Test setup, not cleaning
[2026-03-11 04:18:24] 2026-03-11 03:18:24,319 [wrapper] apfmon messages muted
[2026-03-11 04:18:24] 2026-03-11 03:18:24,321 [wrapper] ==== wrapper stdout END ====
[2026-03-11 04:18:24] 2026-03-11 03:18:24,323 [wrapper] ==== wrapper stderr END ====
[2026-03-11 04:18:24]  *** Error codes and diagnostics ***
[2026-03-11 04:18:24]     "exeErrorCode": 0,
[2026-03-11 04:18:24]     "exeErrorDiag": "",
[2026-03-11 04:18:24]     "pilotErrorCode": 0,
[2026-03-11 04:18:24]     "pilotErrorDiag": "",
[2026-03-11 04:18:24]  *** Listing of results directory ***
[2026-03-11 04:18:24] total 483584
[2026-03-11 04:18:24] -rw-r--r-- 1 boinc boinc    584627 Mar  2 11:57 pilot3.tar.gz
[2026-03-11 04:18:24] -rwx------ 1 boinc boinc     36322 Mar  2 12:00 runpilot2-wrapper.sh
[2026-03-11 04:18:24] -rw-r--r-- 1 boinc boinc      5111 Mar  2 12:02 queuedata.json
[2026-03-11 04:18:24] -rw-r--r-- 1 boinc boinc       100 Mar 11 01:49 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-11 04:18:24] -rwxr-xr-x 1 boinc boinc      7986 Mar 11 01:49 run_atlas
[2026-03-11 04:18:24] -rw-r--r-- 1 boinc boinc       105 Mar 11 01:49 job.xml
[2026-03-11 04:18:24] -rw-r--r-- 2 boinc boinc 278697514 Mar 11 01:49 EVNT.48220221._000044.pool.root.1
[2026-03-11 04:18:24] -rw-r--r-- 2 boinc boinc    597952 Mar 11 01:49 input.tar.gz
[2026-03-11 04:18:24] -rw-r--r-- 2 boinc boinc     15845 Mar 11 01:49 start_atlas.sh
[2026-03-11 04:18:24] drwxrwx--x 2 boinc boinc      4096 Mar 11 01:49 shared
[2026-03-11 04:18:24] -rw-r--r-- 1 boinc boinc         0 Mar 11 01:49 boinc_setup_complete
[2026-03-11 04:18:24] -rw-r--r-- 1 boinc boinc      6205 Mar 11 01:49 init_data.xml
[2026-03-11 04:18:24] -rw-r--r-- 1 boinc boinc         0 Mar 11 01:49 boinc_lockfile
[2026-03-11 04:18:24] -rw-r--r-- 1 boinc boinc      2561 Mar 11 01:49 pandaJob.out
[2026-03-11 04:18:24] -rw------- 1 boinc boinc   1006644 Mar 11 01:49 agis_schedconf.cvmfs.json
[2026-03-11 04:18:24] -rw------- 1 boinc boinc   1511578 Mar 11 01:49 agis_ddmendpoints.agis.ALL.json
[2026-03-11 04:18:24] -rw------- 1 boinc boinc       419 Mar 11 01:50 workernode_map.json
[2026-03-11 04:18:24] drwx------ 5 boinc boinc      4096 Mar 11 01:50 pilot3
[2026-03-11 04:18:24] -rw------- 1 boinc boinc 209432566 Mar 11 04:17 HITS.48838586._001166.pool.root.1
[2026-03-11 04:18:24] -rw-r--r-- 1 boinc boinc       529 Mar 11 04:17 boinc_task_state.xml
[2026-03-11 04:18:24] -rw------- 1 boinc boinc      1014 Mar 11 04:17 memory_monitor_summary.json
[2026-03-11 04:18:24] -rw------- 1 boinc boinc    306280 Mar 11 04:17 log.48838586._001166.job.log.tgz.1
[2026-03-11 04:18:24] -rw------- 1 boinc boinc      6288 Mar 11 04:17 heartbeat.json
[2026-03-11 04:18:24] -rw-r--r-- 1 boinc boinc        27 Mar 11 04:17 wrapper_checkpoint.txt
[2026-03-11 04:18:24] -rw-r--r-- 1 boinc boinc      8192 Mar 11 04:17 boinc_mmap_file
[2026-03-11 04:18:24] -rw------- 1 boinc boinc        95 Mar 11 04:17 pilot_heartbeat.json
[2026-03-11 04:18:24] -rw------- 1 boinc boinc      5344 Mar 11 04:18 pilotlog.txt
[2026-03-11 04:18:24] -rw------- 1 boinc boinc   1260227 Mar 11 04:18 log.48838586._001166.job.log.1
[2026-03-11 04:18:24] -rw------- 1 boinc boinc       357 Mar 11 04:18 output.list
[2026-03-11 04:18:24] -rw-r--r-- 1 boinc boinc       620 Mar 11 04:18 runtime_log
[2026-03-11 04:18:24] -rw------- 1 boinc boinc   1587200 Mar 11 04:18 result.tar.gz
[2026-03-11 04:18:24] -rw-r--r-- 1 boinc boinc      8896 Mar 11 04:18 runtime_log.err
[2026-03-11 04:18:24] -rw------- 1 boinc boinc       657 Mar 11 04:18 k2oNDmACGH9n9Rq4apOajLDm4fhM0noT9bVooX4SDmkHBLDmCG2iYn.diag
[2026-03-11 04:18:24] -rw-r--r-- 1 boinc boinc     12657 Mar 11 04:18 stderr.txt
[2026-03-11 04:18:24] HITS file was successfully produced:
[2026-03-11 04:18:24] -rw------- 1 boinc boinc 209432566 Mar 11 04:17 shared/HITS.pool.root.1
[2026-03-11 04:18:24]  *** Contents of shared directory: ***
[2026-03-11 04:18:24] total 478848
[2026-03-11 04:18:24] -rw-r--r-- 2 boinc boinc 278697514 Mar 11 01:49 ATLAS.root_0
[2026-03-11 04:18:24] -rw-r--r-- 2 boinc boinc    597952 Mar 11 01:49 input.tar.gz
[2026-03-11 04:18:24] -rw-r--r-- 2 boinc boinc     15845 Mar 11 01:49 start_atlas.sh
[2026-03-11 04:18:24] -rw------- 1 boinc boinc 209432566 Mar 11 04:17 HITS.pool.root.1
[2026-03-11 04:18:24] -rw------- 1 boinc boinc   1587200 Mar 11 04:18 result.tar.gz
04:18:26 (2169675): run_atlas exited; CPU time 17263.786520
04:18:26 (2169675): called boinc_finish(0)

</stderr_txt>
]]>

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