Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
03:33:55 (234300): wrapper (7.7.26015): starting
03:33:55 (234300): wrapper: running run_atlas (--nthreads 2)
[2026-03-11 03:33:55] Arguments: --nthreads 2
[2026-03-11 03:33:55] Threads: 2
[2026-03-11 03:33:55] Checking for CVMFS
[2026-03-11 03:33:55] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-11 03:33:55] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-11 03:33:55] Running cvmfs_config stat atlas.cern.ch
[2026-03-11 03:33:55] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-11 03:33:55] 2.9.2.0 2856 2110 56012 157138 2 50 27478438 36864001 0 130560 0 684207 99.976 82990 15640 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-11 03:33:55] CVMFS is ok
[2026-03-11 03:33:55] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-11 03:33:55] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-11 03:33:55] Further information can be found at the LHC@home message board.
[2026-03-11 03:33:55] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-11 03:33:55] Checking for apptainer binary...
[2026-03-11 03:33:55] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-11 03:33:55] Running /usr/bin/apptainer --version
[2026-03-11 03:33:55] apptainer version 1.4.1-1.1
[2026-03-11 03:33:55] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-11 03:33:55] thA337
[2026-03-11 03:33:55] apptainer works
[2026-03-11 03:33:55] Set ATHENA_PROC_NUMBER=2
[2026-03-11 03:33:55] Set ATHENA_CORE_NUMBER=2
[2026-03-11 03:33:55] Starting ATLAS job with PandaID=7047974896
[2026-03-11 03:33:55] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-11 06:02:35]  *** The last 200 lines of the pilot log: ***
[2026-03-11 06:02:35] 2026-03-11 05:01:51,951 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-11 06:02:35] 2026-03-11 05:01:51,951 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-11 06:02:35] 2026-03-11 05:01:51,951 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-11 06:02:35] 2026-03-11 05:01:51,951 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-11 06:02:35] 2026-03-11 05:01:51,951 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-11 06:02:35] 2026-03-11 05:01:51,951 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-11 06:02:35] 2026-03-11 05:01:51,952 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-11 06:02:35] 2026-03-11 05:01:51,952 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-11 06:02:35] 2026-03-11 05:01:51,952 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-11 06:02:35] 2026-03-11 05:01:51,952 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-11 06:02:35] 2026-03-11 05:01:51,952 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-11 06:02:35] 2026-03-11 05:01:51,952 | INFO     | job 7047974896 has completed (purged errors)
[2026-03-11 06:02:35] 2026-03-11 05:01:51,952 | INFO     | overall cleanup function is called
[2026-03-11 06:02:35] 2026-03-11 05:01:52,957 | INFO     | --- collectZombieJob: --- 10, [242734]
[2026-03-11 06:02:35] 2026-03-11 05:01:52,958 | INFO     | zombie collector waiting for pid 242734
[2026-03-11 06:02:35] 2026-03-11 05:01:52,958 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-11 06:02:35] 2026-03-11 05:01:52,958 | INFO     | collected zombie processes
[2026-03-11 06:02:35] 2026-03-11 05:01:52,958 | INFO     | will attempt to kill all subprocesses of pid=242734
[2026-03-11 06:02:35] 2026-03-11 05:01:52,988 | INFO     | process IDs to be killed: [242734] (in reverse order)
[2026-03-11 06:02:35] 2026-03-11 05:01:53,008 | WARNING  | found no corresponding commands to process id(s)
[2026-03-11 06:02:35] 2026-03-11 05:01:53,008 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-11 06:02:35] 2026-03-11 05:01:53,009 | INFO     | did not find any defunct processes belonging to 242734
[2026-03-11 06:02:35] 2026-03-11 05:01:53,009 | INFO     | did not find any defunct processes belonging to 242734
[2026-03-11 06:02:35] 2026-03-11 05:01:53,009 | INFO     | ready for new job
[2026-03-11 06:02:35] 2026-03-11 05:01:53,009 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-11 06:02:35] 2026-03-11 05:01:53,010 | INFO     | **************************************
[2026-03-11 06:02:35] 2026-03-11 05:01:53,010 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-11 06:02:35] 2026-03-11 05:01:53,010 | INFO     | **************************************
[2026-03-11 06:02:35] 2026-03-11 05:01:53,010 | INFO     | 
[2026-03-11 06:02:35] 2026-03-11 05:01:53,010 | INFO     | architecture information:
[2026-03-11 06:02:35] 2026-03-11 05:01:53,010 | INFO     | executing command: cat /etc/os-release
[2026-03-11 06:02:35] 2026-03-11 05:01:53,019 | INFO     | cat /etc/os-release:
[2026-03-11 06:02:35] NAME="CentOS Linux"
[2026-03-11 06:02:35] VERSION="7 (Core)"
[2026-03-11 06:02:35] ID="centos"
[2026-03-11 06:02:35] ID_LIKE="rhel fedora"
[2026-03-11 06:02:35] VERSION_ID="7"
[2026-03-11 06:02:35] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-11 06:02:35] ANSI_COLOR="0;31"
[2026-03-11 06:02:35] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-11 06:02:35] HOME_URL="https://www.centos.org/"
[2026-03-11 06:02:35] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-11 06:02:35] 
[2026-03-11 06:02:35] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-11 06:02:35] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-11 06:02:35] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-11 06:02:35] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-11 06:02:35] 
[2026-03-11 06:02:35] 2026-03-11 05:01:53,019 | INFO     | **************************************
[2026-03-11 06:02:35] 2026-03-11 05:01:53,522 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-11 06:02:35] 2026-03-11 05:01:53,534 | INFO     | sufficient remaining disk space (483249881088 B)
[2026-03-11 06:02:35] 2026-03-11 05:01:53,534 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-11 06:02:35] 2026-03-11 05:01:53,534 | INFO     | current server update state: UPDATING_FINAL
[2026-03-11 06:02:35] 2026-03-11 05:01:53,534 | INFO     | update_server=False
[2026-03-11 06:02:35] 2026-03-11 05:01:53,534 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-11 06:02:35] 2026-03-11 05:01:53,534 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-11 06:02:35] 2026-03-11 05:01:53,534 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-11 06:02:35] 2026-03-11 05:01:53,534 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-11 06:02:35] 2026-03-11 05:01:53,783 | INFO     | all payload control threads have been joined
[2026-03-11 06:02:35] 2026-03-11 05:01:53,967 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-03-11 06:02:35] 2026-03-11 05:01:53,967 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-03-11 06:02:35] 2026-03-11 05:01:53,967 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-11 06:02:35] 2026-03-11 05:01:53,967 | INFO     | will abort loop
[2026-03-11 06:02:35] 2026-03-11 05:01:54,237 | INFO     | all job control threads have been joined
[2026-03-11 06:02:35] 2026-03-11 05:01:54,329 | INFO     | job.realtimelogging is not enabled
[2026-03-11 06:02:35] 2026-03-11 05:01:54,393 | INFO     | all data control threads have been joined
[2026-03-11 06:02:35] 2026-03-11 05:01:54,540 | INFO     | [job] queue monitor thread has finished
[2026-03-11 06:02:35] 2026-03-11 05:01:54,541 | INFO     | [job] retrieve thread has finished
[2026-03-11 06:02:35] 2026-03-11 05:01:54,583 | INFO     | [payload] execute_payloads thread has finished
[2026-03-11 06:02:35] 2026-03-11 05:01:54,790 | INFO     | [payload] control thread has finished
[2026-03-11 06:02:35] 2026-03-11 05:01:54,916 | INFO     | [payload] failed_post thread has finished
[2026-03-11 06:02:35] 2026-03-11 05:01:54,969 | INFO     | [job] job monitor thread has finished
[2026-03-11 06:02:35] 2026-03-11 05:01:55,243 | INFO     | [job] control thread has finished
[2026-03-11 06:02:35] 2026-03-11 05:01:55,335 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-11 06:02:35] 2026-03-11 05:01:55,399 | INFO     | [data] control thread has finished
[2026-03-11 06:02:35] 2026-03-11 05:01:55,400 | INFO     | [job] validate thread has finished
[2026-03-11 06:02:35] 2026-03-11 05:01:55,438 | INFO     | [payload] validate_post thread has finished
[2026-03-11 06:02:35] 2026-03-11 05:01:55,540 | INFO     | [data] copytool_out thread has finished
[2026-03-11 06:02:35] 2026-03-11 05:01:55,794 | INFO     | [data] copytool_in thread has finished
[2026-03-11 06:02:35] 2026-03-11 05:01:55,805 | INFO     | [job] create_data_payload thread has finished
[2026-03-11 06:02:35] 2026-03-11 05:01:55,839 | INFO     | [payload] validate_pre thread has finished
[2026-03-11 06:02:35] 2026-03-11 05:01:57,541 | INFO     | [data] queue_monitor thread has finished
[2026-03-11 06:02:35] 2026-03-11 05:02:23,734 | INFO     | PID=238328 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-11 06:02:35] 2026-03-11 05:02:23,734 | INFO     | found 0 job(s) in 20 queues
[2026-03-11 06:02:35] 2026-03-11 05:02:23,734 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-11 06:02:35] 2026-03-11 05:02:23,734 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-11 06:02:35] 2026-03-11 05:02:29,017 | INFO     | [monitor] cgroup control has ended
[2026-03-11 06:02:35] 2026-03-11 05:02:29,858 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140665421608768)>', '<ExcThread(monitor, started 140664272582400)>']
[2026-03-11 06:02:35] 2026-03-11 05:02:30,772 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-11 06:02:35] 2026-03-11 05:02:30,772 | INFO     | [monitor] control thread has ended
[2026-03-11 06:02:35] 2026-03-11 05:02:34,884 | INFO     | all workflow threads have been joined
[2026-03-11 06:02:35] 2026-03-11 05:02:34,886 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-11 06:02:35] 2026-03-11 05:02:34,886 | INFO     | traces error code: 0
[2026-03-11 06:02:35] 2026-03-11 05:02:34,887 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-11 06:02:35] 2026-03-11 05:02:34,929 [wrapper] ==== pilot stdout END ====
[2026-03-11 06:02:35] 2026-03-11 05:02:34,932 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-11 06:02:35] 2026-03-11 05:02:34,934 [wrapper] pilotpid: 238328
[2026-03-11 06:02:35] 2026-03-11 05:02:34,936 [wrapper] Pilot exit status: 0
[2026-03-11 06:02:35] 2026-03-11 05:02:34,942 [wrapper] pandaids: 7047974896
[2026-03-11 06:02:35] 2026-03-11 05:02:34,954 [wrapper] cleanup supervisor_pilot  247787 238329
[2026-03-11 06:02:35] 2026-03-11 05:02:34,956 [wrapper] Test setup, not cleaning
[2026-03-11 06:02:35] 2026-03-11 05:02:34,958 [wrapper] apfmon messages muted
[2026-03-11 06:02:35] 2026-03-11 05:02:34,961 [wrapper] ==== wrapper stdout END ====
[2026-03-11 06:02:35] 2026-03-11 05:02:34,963 [wrapper] ==== wrapper stderr END ====
[2026-03-11 06:02:35]  *** Error codes and diagnostics ***
[2026-03-11 06:02:35]     "exeErrorCode": 0,
[2026-03-11 06:02:35]     "exeErrorDiag": "",
[2026-03-11 06:02:35]     "pilotErrorCode": 0,
[2026-03-11 06:02:35]     "pilotErrorDiag": "",
[2026-03-11 06:02:35]  *** Listing of results directory ***
[2026-03-11 06:02:35] total 486408
[2026-03-11 06:02:35] -rwx------ 1 boinc boinc     36322 Mar 10 01:54 runpilot2-wrapper.sh
[2026-03-11 06:02:35] -rw-r--r-- 1 boinc boinc      5111 Mar 10 01:56 queuedata.json
[2026-03-11 06:02:35] -rw-r--r-- 1 boinc boinc    584627 Mar 10 01:56 pilot3.tar.gz
[2026-03-11 06:02:35] -rw-r--r-- 1 boinc boinc       100 Mar 11 03:33 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-11 06:02:35] -rwxr-xr-x 1 boinc boinc      7986 Mar 11 03:33 run_atlas
[2026-03-11 06:02:35] -rw-r--r-- 1 boinc boinc       105 Mar 11 03:33 job.xml
[2026-03-11 06:02:35] -rw-r--r-- 2 boinc boinc 282252955 Mar 11 03:33 EVNT.48958551._000132.pool.root.1
[2026-03-11 06:02:35] -rw-r--r-- 2 boinc boinc    597949 Mar 11 03:33 input.tar.gz
[2026-03-11 06:02:35] -rw-r--r-- 2 boinc boinc     15845 Mar 11 03:33 start_atlas.sh
[2026-03-11 06:02:35] drwxrwx--x 2 boinc boinc      4096 Mar 11 03:33 shared
[2026-03-11 06:02:35] -rw-r--r-- 1 boinc boinc         0 Mar 11 03:33 boinc_setup_complete
[2026-03-11 06:02:35] -rw-r--r-- 1 boinc boinc      6205 Mar 11 03:33 init_data.xml
[2026-03-11 06:02:35] -rw-r--r-- 1 boinc boinc         0 Mar 11 03:33 boinc_lockfile
[2026-03-11 06:02:35] -rw-r--r-- 1 boinc boinc      2518 Mar 11 03:33 pandaJob.out
[2026-03-11 06:02:35] -rw------- 1 boinc boinc   1006644 Mar 11 03:34 agis_schedconf.cvmfs.json
[2026-03-11 06:02:35] -rw------- 1 boinc boinc   1511578 Mar 11 03:34 agis_ddmendpoints.agis.ALL.json
[2026-03-11 06:02:35] -rw------- 1 boinc boinc       419 Mar 11 03:34 workernode_map.json
[2026-03-11 06:02:35] drwx------ 5 boinc boinc      4096 Mar 11 03:34 pilot3
[2026-03-11 06:02:35] -rw------- 1 boinc boinc 208784836 Mar 11 06:01 HITS.48958554._003351.pool.root.1
[2026-03-11 06:02:35] -rw-r--r-- 1 boinc boinc       530 Mar 11 06:01 boinc_task_state.xml
[2026-03-11 06:02:35] -rw------- 1 boinc boinc      1030 Mar 11 06:01 memory_monitor_summary.json
[2026-03-11 06:02:35] -rw------- 1 boinc boinc        95 Mar 11 06:01 pilot_heartbeat.json
[2026-03-11 06:02:35] -rw------- 1 boinc boinc    303884 Mar 11 06:01 log.48958554._003351.job.log.tgz.1
[2026-03-11 06:02:35] -rw------- 1 boinc boinc      6294 Mar 11 06:01 heartbeat.json
[2026-03-11 06:02:35] -rw-r--r-- 1 boinc boinc        27 Mar 11 06:02 wrapper_checkpoint.txt
[2026-03-11 06:02:35] -rw-r--r-- 1 boinc boinc      8192 Mar 11 06:02 boinc_mmap_file
[2026-03-11 06:02:35] -rw------- 1 boinc boinc      5005 Mar 11 06:02 pilotlog.txt
[2026-03-11 06:02:35] -rw------- 1 boinc boinc   1260356 Mar 11 06:02 log.48958554._003351.job.log.1
[2026-03-11 06:02:35] -rw------- 1 boinc boinc       357 Mar 11 06:02 output.list
[2026-03-11 06:02:35] -rw-r--r-- 1 boinc boinc       620 Mar 11 06:02 runtime_log
[2026-03-11 06:02:35] -rw------- 1 boinc boinc   1576960 Mar 11 06:02 result.tar.gz
[2026-03-11 06:02:35] -rw------- 1 boinc boinc       657 Mar 11 06:02 zGyMDmDY0J9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmPNeLDmzbcoOo.diag
[2026-03-11 06:02:35] -rw-r--r-- 1 boinc boinc      8896 Mar 11 06:02 runtime_log.err
[2026-03-11 06:02:35] -rw-r--r-- 1 boinc boinc     12240 Mar 11 06:02 stderr.txt
[2026-03-11 06:02:35] HITS file was successfully produced:
[2026-03-11 06:02:35] -rw------- 1 boinc boinc 208784836 Mar 11 06:01 shared/HITS.pool.root.1
[2026-03-11 06:02:35]  *** Contents of shared directory: ***
[2026-03-11 06:02:35] total 481676
[2026-03-11 06:02:35] -rw-r--r-- 2 boinc boinc 282252955 Mar 11 03:33 ATLAS.root_0
[2026-03-11 06:02:35] -rw-r--r-- 2 boinc boinc    597949 Mar 11 03:33 input.tar.gz
[2026-03-11 06:02:35] -rw-r--r-- 2 boinc boinc     15845 Mar 11 03:33 start_atlas.sh
[2026-03-11 06:02:35] -rw------- 1 boinc boinc 208784836 Mar 11 06:01 HITS.pool.root.1
[2026-03-11 06:02:35] -rw------- 1 boinc boinc   1576960 Mar 11 06:02 result.tar.gz
06:02:36 (234300): run_atlas exited; CPU time 17318.217755
06:02:36 (234300): called boinc_finish(0)

</stderr_txt>
]]>

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