Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
02:07:05 (2563556): wrapper (7.7.26015): starting
02:07:05 (2563556): wrapper: running run_atlas (--nthreads 3)
[2026-03-11 02:07:05] Arguments: --nthreads 3
[2026-03-11 02:07:05] Threads: 3
[2026-03-11 02:07:05] Checking for CVMFS
[2026-03-11 02:07:05] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-11 02:07:05] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-11 02:07:05] Running cvmfs_config stat atlas.cern.ch
[2026-03-11 02:07:05] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-11 02:07:05] 2.9.2.0 2903 17773 90224 157136 3 50 29179868 36864001 0 130560 0 7193808 99.981 802797 6365 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-11 02:07:05] CVMFS is ok
[2026-03-11 02:07:06] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-11 02:07:06] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-11 02:07:06] Further information can be found at the LHC@home message board.
[2026-03-11 02:07:06] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-11 02:07:06] Checking for apptainer binary...
[2026-03-11 02:07:06] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-11 02:07:06] Running /usr/bin/apptainer --version
[2026-03-11 02:07:06] apptainer version 1.4.1-1.1
[2026-03-11 02:07:06] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-11 02:07:06] belleA253
[2026-03-11 02:07:06] apptainer works
[2026-03-11 02:07:06] Set ATHENA_PROC_NUMBER=3
[2026-03-11 02:07:06] Set ATHENA_CORE_NUMBER=3
[2026-03-11 02:07:06] Starting ATLAS job with PandaID=7035912154
[2026-03-11 02:07:06] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-11 07:05:43]  *** The last 200 lines of the pilot log: ***
[2026-03-11 07:05:43] 2026-03-11 06:04:45,323 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-11 07:05:43] 2026-03-11 06:04:45,323 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-11 07:05:43] 2026-03-11 06:04:45,323 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-11 07:05:43] 2026-03-11 06:04:45,323 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-11 07:05:43] 2026-03-11 06:04:45,323 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-11 07:05:43] 2026-03-11 06:04:45,323 | INFO     | job 7035912154 has completed (purged errors)
[2026-03-11 07:05:43] 2026-03-11 06:04:45,323 | INFO     | overall cleanup function is called
[2026-03-11 07:05:43] 2026-03-11 06:04:46,329 | INFO     | --- collectZombieJob: --- 10, [2572032]
[2026-03-11 07:05:43] 2026-03-11 06:04:46,330 | INFO     | zombie collector waiting for pid 2572032
[2026-03-11 07:05:43] 2026-03-11 06:04:46,330 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-11 07:05:43] 2026-03-11 06:04:46,330 | INFO     | collected zombie processes
[2026-03-11 07:05:43] 2026-03-11 06:04:46,330 | INFO     | will attempt to kill all subprocesses of pid=2572032
[2026-03-11 07:05:43] 2026-03-11 06:04:46,370 | INFO     | process IDs to be killed: [2572032] (in reverse order)
[2026-03-11 07:05:43] 2026-03-11 06:04:46,397 | WARNING  | found no corresponding commands to process id(s)
[2026-03-11 07:05:43] 2026-03-11 06:04:46,397 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-11 07:05:43] 2026-03-11 06:04:46,398 | INFO     | did not find any defunct processes belonging to 2572032
[2026-03-11 07:05:43] 2026-03-11 06:04:46,399 | INFO     | did not find any defunct processes belonging to 2572032
[2026-03-11 07:05:43] 2026-03-11 06:04:46,399 | INFO     | ready for new job
[2026-03-11 07:05:43] 2026-03-11 06:04:46,399 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-11 07:05:43] 2026-03-11 06:04:46,400 | INFO     | **************************************
[2026-03-11 07:05:43] 2026-03-11 06:04:46,400 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-11 07:05:43] 2026-03-11 06:04:46,400 | INFO     | **************************************
[2026-03-11 07:05:43] 2026-03-11 06:04:46,400 | INFO     | 
[2026-03-11 07:05:43] 2026-03-11 06:04:46,401 | INFO     | architecture information:
[2026-03-11 07:05:43] 2026-03-11 06:04:46,401 | INFO     | executing command: cat /etc/os-release
[2026-03-11 07:05:43] 2026-03-11 06:04:46,410 | INFO     | cat /etc/os-release:
[2026-03-11 07:05:43] NAME="CentOS Linux"
[2026-03-11 07:05:43] VERSION="7 (Core)"
[2026-03-11 07:05:43] ID="centos"
[2026-03-11 07:05:43] ID_LIKE="rhel fedora"
[2026-03-11 07:05:43] VERSION_ID="7"
[2026-03-11 07:05:43] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-11 07:05:43] ANSI_COLOR="0;31"
[2026-03-11 07:05:43] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-11 07:05:43] HOME_URL="https://www.centos.org/"
[2026-03-11 07:05:43] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-11 07:05:43] 
[2026-03-11 07:05:43] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-11 07:05:43] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-11 07:05:43] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-11 07:05:43] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-11 07:05:43] 
[2026-03-11 07:05:43] 2026-03-11 06:04:46,411 | INFO     | **************************************
[2026-03-11 07:05:43] 2026-03-11 06:04:46,914 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-11 07:05:43] 2026-03-11 06:04:46,928 | INFO     | sufficient remaining disk space (374767353856 B)
[2026-03-11 07:05:43] 2026-03-11 06:04:46,928 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-11 07:05:43] 2026-03-11 06:04:46,928 | INFO     | current server update state: UPDATING_FINAL
[2026-03-11 07:05:43] 2026-03-11 06:04:46,928 | INFO     | update_server=False
[2026-03-11 07:05:43] 2026-03-11 06:04:46,928 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-11 07:05:43] 2026-03-11 06:04:46,928 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-11 07:05:43] 2026-03-11 06:04:46,928 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-11 07:05:43] 2026-03-11 06:04:46,929 | INFO     | aborting loop
[2026-03-11 07:05:43] 2026-03-11 06:04:47,386 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-11 07:05:43] 2026-03-11 06:04:47,661 | INFO     | all data control threads have been joined
[2026-03-11 07:05:43] 2026-03-11 06:04:47,934 | INFO     | [job] queue monitor thread has finished
[2026-03-11 07:05:43] 2026-03-11 06:04:47,934 | INFO     | [job] job monitor thread has finished
[2026-03-11 07:05:43] 2026-03-11 06:04:47,934 | INFO     | [job] retrieve thread has finished
[2026-03-11 07:05:43] 2026-03-11 06:04:47,935 | INFO     | [job] create_data_payload thread has finished
[2026-03-11 07:05:43] 2026-03-11 06:04:47,989 | INFO     | [payload] validate_pre thread has finished
[2026-03-11 07:05:43] 2026-03-11 06:04:48,047 | INFO     | all payload control threads have been joined
[2026-03-11 07:05:43] 2026-03-11 06:04:48,063 | INFO     | [data] copytool_in thread has finished
[2026-03-11 07:05:43] 2026-03-11 06:04:48,139 | INFO     | [payload] validate_post thread has finished
[2026-03-11 07:05:43] 2026-03-11 06:04:48,174 | INFO     | all job control threads have been joined
[2026-03-11 07:05:43] 2026-03-11 06:04:48,666 | INFO     | [data] control thread has finished
[2026-03-11 07:05:43] 2026-03-11 06:04:48,682 | INFO     | [payload] failed_post thread has finished
[2026-03-11 07:05:43] 2026-03-11 06:04:49,053 | INFO     | [payload] control thread has finished
[2026-03-11 07:05:43] 2026-03-11 06:04:49,060 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-11 07:05:43] 2026-03-11 06:04:49,180 | INFO     | [job] control thread has finished
[2026-03-11 07:05:43] 2026-03-11 06:04:49,214 | INFO     | [payload] execute_payloads thread has finished
[2026-03-11 07:05:43] 2026-03-11 06:04:49,287 | INFO     | [job] validate thread has finished
[2026-03-11 07:05:43] 2026-03-11 06:04:49,392 | INFO     | [data] copytool_out thread has finished
[2026-03-11 07:05:43] 2026-03-11 06:04:53,066 | INFO     | [data] queue_monitor thread has finished
[2026-03-11 07:05:43] 2026-03-11 06:04:57,822 | INFO     | job.realtimelogging is not enabled
[2026-03-11 07:05:43] 2026-03-11 06:04:58,827 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-11 07:05:43] 2026-03-11 06:05:16,930 | INFO     | PID=2567605 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-11 07:05:43] 2026-03-11 06:05:16,930 | INFO     | found 0 job(s) in 20 queues
[2026-03-11 07:05:43] 2026-03-11 06:05:16,930 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-11 07:05:43] 2026-03-11 06:05:16,930 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-11 07:05:43] 2026-03-11 06:05:36,956 | INFO     | [monitor] cgroup control has ended
[2026-03-11 07:05:43] 2026-03-11 06:05:38,291 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139998344427328)>', '<ExcThread(monitor, started 139997269190400)>']
[2026-03-11 07:05:43] 2026-03-11 06:05:39,047 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-11 07:05:43] 2026-03-11 06:05:39,047 | INFO     | [monitor] control thread has ended
[2026-03-11 07:05:43] 2026-03-11 06:05:43,312 | INFO     | all workflow threads have been joined
[2026-03-11 07:05:43] 2026-03-11 06:05:43,312 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-11 07:05:43] 2026-03-11 06:05:43,312 | INFO     | traces error code: 0
[2026-03-11 07:05:43] 2026-03-11 06:05:43,312 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-11 07:05:43] 2026-03-11 06:05:43,362 [wrapper] ==== pilot stdout END ====
[2026-03-11 07:05:43] 2026-03-11 06:05:43,365 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-11 07:05:43] 2026-03-11 06:05:43,368 [wrapper] pilotpid: 2567605
[2026-03-11 07:05:43] 2026-03-11 06:05:43,370 [wrapper] Pilot exit status: 0
[2026-03-11 07:05:43] 2026-03-11 06:05:43,378 [wrapper] pandaids: 7035912154
[2026-03-11 07:05:43] 2026-03-11 06:05:43,395 [wrapper] cleanup supervisor_pilot 2580607 2567606
[2026-03-11 07:05:43] 2026-03-11 06:05:43,398 [wrapper] Test setup, not cleaning
[2026-03-11 07:05:43] 2026-03-11 06:05:43,401 [wrapper] apfmon messages muted
[2026-03-11 07:05:43] 2026-03-11 06:05:43,403 [wrapper] ==== wrapper stdout END ====
[2026-03-11 07:05:43] 2026-03-11 06:05:43,406 [wrapper] ==== wrapper stderr END ====
[2026-03-11 07:05:43]  *** Error codes and diagnostics ***
[2026-03-11 07:05:43]     "exeErrorCode": 0,
[2026-03-11 07:05:43]     "exeErrorDiag": "",
[2026-03-11 07:05:43]     "pilotErrorCode": 0,
[2026-03-11 07:05:43]     "pilotErrorDiag": "",
[2026-03-11 07:05:43]  *** Listing of results directory ***
[2026-03-11 07:05:43] total 615640
[2026-03-11 07:05:43] -rw-r--r-- 1 boinc boinc    584627 Mar  2 10:36 pilot3.tar.gz
[2026-03-11 07:05:43] -rwx------ 1 boinc boinc     36322 Mar  2 10:40 runpilot2-wrapper.sh
[2026-03-11 07:05:43] -rw-r--r-- 1 boinc boinc      5111 Mar  2 10:42 queuedata.json
[2026-03-11 07:05:43] -rw-r--r-- 1 boinc boinc       100 Mar 11 02:07 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-11 07:05:43] -rwxr-xr-x 1 boinc boinc      7986 Mar 11 02:07 run_atlas
[2026-03-11 07:05:43] -rw-r--r-- 1 boinc boinc       105 Mar 11 02:07 job.xml
[2026-03-11 07:05:43] -rw-r--r-- 2 boinc boinc 279829487 Mar 11 02:07 EVNT.48451139._000002.pool.root.1
[2026-03-11 07:05:43] -rw-r--r-- 2 boinc boinc    597968 Mar 11 02:07 input.tar.gz
[2026-03-11 07:05:43] -rw-r--r-- 2 boinc boinc     15845 Mar 11 02:07 start_atlas.sh
[2026-03-11 07:05:43] drwxrwx--x 2 boinc boinc      4096 Mar 11 02:07 shared
[2026-03-11 07:05:43] -rw-r--r-- 1 boinc boinc         0 Mar 11 02:07 boinc_setup_complete
[2026-03-11 07:05:43] -rw-r--r-- 1 boinc boinc      6447 Mar 11 02:07 init_data.xml
[2026-03-11 07:05:43] -rw-r--r-- 1 boinc boinc         0 Mar 11 02:07 boinc_lockfile
[2026-03-11 07:05:43] -rw-r--r-- 1 boinc boinc      2619 Mar 11 02:07 pandaJob.out
[2026-03-11 07:05:43] -rw------- 1 boinc boinc   1006644 Mar 11 02:07 agis_schedconf.cvmfs.json
[2026-03-11 07:05:43] -rw------- 1 boinc boinc       426 Mar 11 02:07 workernode_map.json
[2026-03-11 07:05:43] drwx------ 5 boinc boinc      4096 Mar 11 02:07 pilot3
[2026-03-11 07:05:43] -rw------- 1 boinc boinc 340779955 Mar 11 07:04 HITS.48846030._000037.pool.root.1
[2026-03-11 07:05:43] -rw-r--r-- 1 boinc boinc       530 Mar 11 07:04 boinc_task_state.xml
[2026-03-11 07:05:43] -rw------- 1 boinc boinc      1015 Mar 11 07:04 memory_monitor_summary.json
[2026-03-11 07:05:43] -rw------- 1 boinc boinc        95 Mar 11 07:04 pilot_heartbeat.json
[2026-03-11 07:05:43] -rw------- 1 boinc boinc   1511578 Mar 11 07:04 agis_ddmendpoints.agis.ALL.json
[2026-03-11 07:05:43] -rw------- 1 boinc boinc    433282 Mar 11 07:04 log.48846030._000037.job.log.tgz.1
[2026-03-11 07:05:43] -rw------- 1 boinc boinc      6294 Mar 11 07:04 heartbeat.json
[2026-03-11 07:05:43] -rw-r--r-- 1 boinc boinc        28 Mar 11 07:05 wrapper_checkpoint.txt
[2026-03-11 07:05:43] -rw-r--r-- 1 boinc boinc      8192 Mar 11 07:05 boinc_mmap_file
[2026-03-11 07:05:43] -rw------- 1 boinc boinc      4820 Mar 11 07:05 pilotlog.txt
[2026-03-11 07:05:43] -rw------- 1 boinc boinc   2506168 Mar 11 07:05 log.48846030._000037.job.log.1
[2026-03-11 07:05:43] -rw------- 1 boinc boinc       357 Mar 11 07:05 output.list
[2026-03-11 07:05:43] -rw-r--r-- 1 boinc boinc       620 Mar 11 07:05 runtime_log
[2026-03-11 07:05:43] -rw------- 1 boinc boinc   2959360 Mar 11 07:05 result.tar.gz
[2026-03-11 07:05:43] -rw-r--r-- 1 boinc boinc      8912 Mar 11 07:05 runtime_log.err
[2026-03-11 07:05:43] -rw------- 1 boinc boinc       664 Mar 11 07:05 H6LLDmYwEH9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmi9CLDm8cAaOn.diag
[2026-03-11 07:05:43] -rw-r--r-- 1 boinc boinc     11407 Mar 11 07:05 stderr.txt
[2026-03-11 07:05:43] HITS file was successfully produced:
[2026-03-11 07:05:43] -rw------- 1 boinc boinc 340779955 Mar 11 07:04 shared/HITS.pool.root.1
[2026-03-11 07:05:43]  *** Contents of shared directory: ***
[2026-03-11 07:05:43] total 609568
[2026-03-11 07:05:43] -rw-r--r-- 2 boinc boinc 279829487 Mar 11 02:07 ATLAS.root_0
[2026-03-11 07:05:43] -rw-r--r-- 2 boinc boinc    597968 Mar 11 02:07 input.tar.gz
[2026-03-11 07:05:43] -rw-r--r-- 2 boinc boinc     15845 Mar 11 02:07 start_atlas.sh
[2026-03-11 07:05:43] -rw------- 1 boinc boinc 340779955 Mar 11 07:04 HITS.pool.root.1
[2026-03-11 07:05:43] -rw------- 1 boinc boinc   2959360 Mar 11 07:05 result.tar.gz
07:05:45 (2563556): run_atlas exited; CPU time 52613.897920
07:05:45 (2563556): called boinc_finish(0)

</stderr_txt>
]]>

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