Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
21:14:10 (381519): wrapper (7.7.26015): starting
21:14:10 (381519): wrapper: running run_atlas (--nthreads 4)
[2026-03-10 21:14:10] Arguments: --nthreads 4
[2026-03-10 21:14:10] Threads: 4
[2026-03-10 21:14:10] Checking for CVMFS
[2026-03-10 21:14:10] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-10 21:14:11] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-10 21:14:11] Running cvmfs_config stat atlas.cern.ch
[2026-03-10 21:14:11] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-10 21:14:11] 2.9.2.0 3071 1732 92676 157129 3 1 34806841 36864000 0 130560 0 1080190 99.987 69221 12863 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-10 21:14:11] CVMFS is ok
[2026-03-10 21:14:11] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-10 21:14:11] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-10 21:14:11] Further information can be found at the LHC@home message board.
[2026-03-10 21:14:11] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-10 21:14:11] Checking for apptainer binary...
[2026-03-10 21:14:11] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-10 21:14:11] Running /usr/bin/apptainer --version
[2026-03-10 21:14:11] apptainer version 1.4.1-1.1
[2026-03-10 21:14:11] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-10 21:14:11] thA373a
[2026-03-10 21:14:11] apptainer works
[2026-03-10 21:14:11] Set ATHENA_PROC_NUMBER=4
[2026-03-10 21:14:11] Set ATHENA_CORE_NUMBER=4
[2026-03-10 21:14:11] Starting ATLAS job with PandaID=7042433491
[2026-03-10 21:14:11] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-10 22:23:33]  *** The last 200 lines of the pilot log: ***
[2026-03-10 22:23:33] 2026-03-10 21:22:39,121 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-10 22:23:33] 2026-03-10 21:22:39,121 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-10 22:23:33] 2026-03-10 21:22:39,121 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-10 22:23:33] 2026-03-10 21:22:39,121 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-10 22:23:33] 2026-03-10 21:22:39,121 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-10 22:23:33] 2026-03-10 21:22:39,121 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-10 22:23:33] 2026-03-10 21:22:39,121 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-10 22:23:33] 2026-03-10 21:22:39,121 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-10 22:23:33] 2026-03-10 21:22:39,121 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-10 22:23:33] 2026-03-10 21:22:39,121 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-10 22:23:33] 2026-03-10 21:22:39,121 | INFO     | job 7042433491 has completed (purged errors)
[2026-03-10 22:23:33] 2026-03-10 21:22:39,121 | INFO     | overall cleanup function is called
[2026-03-10 22:23:33] 2026-03-10 21:22:40,128 | INFO     | --- collectZombieJob: --- 10, [390151]
[2026-03-10 22:23:33] 2026-03-10 21:22:40,128 | INFO     | zombie collector waiting for pid 390151
[2026-03-10 22:23:33] 2026-03-10 21:22:40,128 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-10 22:23:33] 2026-03-10 21:22:40,128 | INFO     | collected zombie processes
[2026-03-10 22:23:33] 2026-03-10 21:22:40,128 | INFO     | will attempt to kill all subprocesses of pid=390151
[2026-03-10 22:23:33] 2026-03-10 21:22:40,171 | INFO     | process IDs to be killed: [390151] (in reverse order)
[2026-03-10 22:23:33] 2026-03-10 21:22:40,205 | WARNING  | found no corresponding commands to process id(s)
[2026-03-10 22:23:33] 2026-03-10 21:22:40,205 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-10 22:23:33] 2026-03-10 21:22:40,207 | INFO     | did not find any defunct processes belonging to 390151
[2026-03-10 22:23:33] 2026-03-10 21:22:40,208 | INFO     | did not find any defunct processes belonging to 390151
[2026-03-10 22:23:33] 2026-03-10 21:22:40,209 | INFO     | ready for new job
[2026-03-10 22:23:33] 2026-03-10 21:22:40,209 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-10 22:23:33] 2026-03-10 21:22:40,209 | INFO     | **************************************
[2026-03-10 22:23:33] 2026-03-10 21:22:40,209 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-10 22:23:33] 2026-03-10 21:22:40,209 | INFO     | **************************************
[2026-03-10 22:23:33] 2026-03-10 21:22:40,209 | INFO     | 
[2026-03-10 22:23:33] 2026-03-10 21:22:40,210 | INFO     | architecture information:
[2026-03-10 22:23:33] 2026-03-10 21:22:40,210 | INFO     | executing command: cat /etc/os-release
[2026-03-10 22:23:33] 2026-03-10 21:22:40,225 | INFO     | cat /etc/os-release:
[2026-03-10 22:23:33] NAME="CentOS Linux"
[2026-03-10 22:23:33] VERSION="7 (Core)"
[2026-03-10 22:23:33] ID="centos"
[2026-03-10 22:23:33] ID_LIKE="rhel fedora"
[2026-03-10 22:23:33] VERSION_ID="7"
[2026-03-10 22:23:33] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-10 22:23:33] ANSI_COLOR="0;31"
[2026-03-10 22:23:33] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-10 22:23:33] HOME_URL="https://www.centos.org/"
[2026-03-10 22:23:33] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-10 22:23:33] 
[2026-03-10 22:23:33] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-10 22:23:33] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-10 22:23:33] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-10 22:23:33] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-10 22:23:33] 
[2026-03-10 22:23:33] 2026-03-10 21:22:40,225 | INFO     | **************************************
[2026-03-10 22:23:33] 2026-03-10 21:22:40,728 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-10 22:23:33] 2026-03-10 21:22:40,746 | INFO     | sufficient remaining disk space (323302195200 B)
[2026-03-10 22:23:33] 2026-03-10 21:22:40,746 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-10 22:23:33] 2026-03-10 21:22:40,746 | INFO     | current server update state: UPDATING_FINAL
[2026-03-10 22:23:33] 2026-03-10 21:22:40,746 | INFO     | update_server=False
[2026-03-10 22:23:33] 2026-03-10 21:22:40,746 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-10 22:23:33] 2026-03-10 21:22:40,747 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-10 22:23:33] 2026-03-10 21:22:40,747 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-10 22:23:33] 2026-03-10 21:22:40,747 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-10 22:23:33] 2026-03-10 21:22:40,747 | INFO     | aborting loop
[2026-03-10 22:23:33] 2026-03-10 21:22:41,013 | INFO     | all payload control threads have been joined
[2026-03-10 22:23:33] 2026-03-10 21:22:41,143 | INFO     | all data control threads have been joined
[2026-03-10 22:23:33] 2026-03-10 21:22:41,752 | INFO     | [job] retrieve thread has finished
[2026-03-10 22:23:33] 2026-03-10 21:22:41,752 | INFO     | [job] queue monitor thread has finished
[2026-03-10 22:23:33] 2026-03-10 21:22:41,753 | INFO     | [job] job monitor thread has finished
[2026-03-10 22:23:33] 2026-03-10 21:22:42,013 | INFO     | [payload] execute_payloads thread has finished
[2026-03-10 22:23:33] 2026-03-10 21:22:42,019 | INFO     | [payload] control thread has finished
[2026-03-10 22:23:33] 2026-03-10 21:22:42,064 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-10 22:23:33] 2026-03-10 21:22:42,064 | INFO     | all job control threads have been joined
[2026-03-10 22:23:33] 2026-03-10 21:22:42,149 | INFO     | [data] control thread has finished
[2026-03-10 22:23:33] 2026-03-10 21:22:42,181 | INFO     | [job] validate thread has finished
[2026-03-10 22:23:33] 2026-03-10 21:22:42,266 | INFO     | [job] create_data_payload thread has finished
[2026-03-10 22:23:33] 2026-03-10 21:22:42,286 | INFO     | [payload] failed_post thread has finished
[2026-03-10 22:23:33] 2026-03-10 21:22:42,310 | INFO     | [payload] validate_pre thread has finished
[2026-03-10 22:23:33] 2026-03-10 21:22:42,501 | INFO     | [data] copytool_in thread has finished
[2026-03-10 22:23:33] 2026-03-10 21:22:42,672 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-10 22:23:33] 2026-03-10 21:22:43,070 | INFO     | [job] control thread has finished
[2026-03-10 22:23:33] 2026-03-10 21:22:43,155 | INFO     | [payload] validate_post thread has finished
[2026-03-10 22:23:33] 2026-03-10 21:22:44,070 | INFO     | [data] copytool_out thread has finished
[2026-03-10 22:23:33] 2026-03-10 21:22:44,754 | INFO     | [data] queue_monitor thread has finished
[2026-03-10 22:23:33] 2026-03-10 21:23:11,677 | INFO     | PID=385634 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-10 22:23:33] 2026-03-10 21:23:11,677 | INFO     | found 0 job(s) in 20 queues
[2026-03-10 22:23:33] 2026-03-10 21:23:11,677 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-10 22:23:33] 2026-03-10 21:23:11,677 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-10 22:23:33] 2026-03-10 21:23:27,781 | INFO     | [monitor] cgroup control has ended
[2026-03-10 22:23:33] 2026-03-10 21:23:28,498 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139902361909056)>', '<ExcThread(monitor, started 139901999748864)>']
[2026-03-10 22:23:33] 2026-03-10 21:23:28,768 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-10 22:23:33] 2026-03-10 21:23:28,768 | INFO     | [monitor] control thread has ended
[2026-03-10 22:23:33] 2026-03-10 21:23:33,524 | INFO     | all workflow threads have been joined
[2026-03-10 22:23:33] 2026-03-10 21:23:33,524 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-10 22:23:33] 2026-03-10 21:23:33,524 | INFO     | traces error code: 0
[2026-03-10 22:23:33] 2026-03-10 21:23:33,525 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-10 22:23:33] 2026-03-10 21:23:33,601 [wrapper] ==== pilot stdout END ====
[2026-03-10 22:23:33] 2026-03-10 21:23:33,606 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-10 22:23:33] 2026-03-10 21:23:33,609 [wrapper] pilotpid: 385634
[2026-03-10 22:23:33] 2026-03-10 21:23:33,613 [wrapper] Pilot exit status: 0
[2026-03-10 22:23:33] 2026-03-10 21:23:33,625 [wrapper] pandaids: 7042433491
[2026-03-10 22:23:33] 2026-03-10 21:23:33,645 [wrapper] cleanup supervisor_pilot  395234 385635
[2026-03-10 22:23:33] 2026-03-10 21:23:33,648 [wrapper] Test setup, not cleaning
[2026-03-10 22:23:33] 2026-03-10 21:23:33,652 [wrapper] apfmon messages muted
[2026-03-10 22:23:33] 2026-03-10 21:23:33,656 [wrapper] ==== wrapper stdout END ====
[2026-03-10 22:23:33] 2026-03-10 21:23:33,659 [wrapper] ==== wrapper stderr END ====
[2026-03-10 22:23:33]  *** Error codes and diagnostics ***
[2026-03-10 22:23:33]     "exeErrorCode": 65,
[2026-03-10 22:23:33]     "exeErrorDiag": "EVNTtoHITS got a SIGHUP signal (exit code 129); Logfile error in log.EVNTtoHITS: \"CoreDumpSvc   FATAL Caught fatal signal. Printing details to stdout.\"",
[2026-03-10 22:23:33]     "pilotErrorCode": 1305,
[2026-03-10 22:23:33]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: EVNTtoHITS got a SIGHUP signal (exit code 129); Logfile error in log.EVNTtoHITS: \"CoreDumpSvc   FATAL Caught fatal signal. Printing details to stdout.\"",
[2026-03-10 22:23:33]  *** Listing of results directory ***
[2026-03-10 22:23:33] total 432636
[2026-03-10 22:23:33] -rw-r--r-- 1 boinc boinc      5111 Mar 10 12:12 queuedata.json
[2026-03-10 22:23:33] -rw-r--r-- 1 boinc boinc    584627 Mar 10 12:12 pilot3.tar.gz
[2026-03-10 22:23:33] -rwx------ 1 boinc boinc     36322 Mar 10 12:12 runpilot2-wrapper.sh
[2026-03-10 22:23:33] -rw-r--r-- 1 boinc boinc       100 Mar 10 21:14 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-10 22:23:33] -rwxr-xr-x 1 boinc boinc      7986 Mar 10 21:14 run_atlas
[2026-03-10 22:23:33] -rw-r--r-- 1 boinc boinc       105 Mar 10 21:14 job.xml
[2026-03-10 22:23:33] -rw-r--r-- 2 boinc boinc 437382017 Mar 10 21:14 EVNT.46701403._000841.pool.root.1
[2026-03-10 22:23:33] -rw-r--r-- 2 boinc boinc    597950 Mar 10 21:14 input.tar.gz
[2026-03-10 22:23:33] -rw-r--r-- 2 boinc boinc     15845 Mar 10 21:14 start_atlas.sh
[2026-03-10 22:23:33] drwxrwx--x 2 boinc boinc      4096 Mar 10 21:14 shared
[2026-03-10 22:23:33] -rw-r--r-- 1 boinc boinc         0 Mar 10 21:14 boinc_setup_complete
[2026-03-10 22:23:33] -rw-r--r-- 1 boinc boinc      6377 Mar 10 21:14 init_data.xml
[2026-03-10 22:23:33] -rw-r--r-- 1 boinc boinc         0 Mar 10 21:14 boinc_lockfile
[2026-03-10 22:23:33] -rw-r--r-- 1 boinc boinc      2564 Mar 10 21:14 pandaJob.out
[2026-03-10 22:23:33] -rw------- 1 boinc boinc   1006644 Mar 10 21:14 agis_schedconf.cvmfs.json
[2026-03-10 22:23:33] -rw------- 1 boinc boinc   1511578 Mar 10 21:14 agis_ddmendpoints.agis.ALL.json
[2026-03-10 22:23:33] -rw------- 1 boinc boinc       428 Mar 10 21:14 workernode_map.json
[2026-03-10 22:23:33] drwx------ 5 boinc boinc      4096 Mar 10 21:14 pilot3
[2026-03-10 22:23:33] -rw-r--r-- 1 boinc boinc       530 Mar 10 22:20 boinc_task_state.xml
[2026-03-10 22:23:33] -rw------- 1 boinc boinc      1018 Mar 10 22:20 memory_monitor_summary.json
[2026-03-10 22:23:33] -rw------- 1 boinc boinc    243433 Mar 10 22:20 log.48955006._042196.job.log.tgz.1
[2026-03-10 22:23:33] -rw------- 1 boinc boinc      8088 Mar 10 22:22 heartbeat.json
[2026-03-10 22:23:33] -rw------- 1 boinc boinc        95 Mar 10 22:22 pilot_heartbeat.json
[2026-03-10 22:23:33] -rw-r--r-- 1 boinc boinc        27 Mar 10 22:23 wrapper_checkpoint.txt
[2026-03-10 22:23:33] -rw------- 1 boinc boinc      4747 Mar 10 22:23 pilotlog.txt
[2026-03-10 22:23:33] -rw------- 1 boinc boinc    613468 Mar 10 22:23 log.48955006._042196.job.log.1
[2026-03-10 22:23:33] -rw-r--r-- 1 boinc boinc      8192 Mar 10 22:23 boinc_mmap_file
[2026-03-10 22:23:33] -rw------- 1 boinc boinc       188 Mar 10 22:23 output.list
[2026-03-10 22:23:33] -rw-r--r-- 1 boinc boinc       620 Mar 10 22:23 runtime_log
[2026-03-10 22:23:33] -rw------- 1 boinc boinc    880640 Mar 10 22:23 result.tar.gz
[2026-03-10 22:23:33] -rw------- 1 boinc boinc       658 Mar 10 22:23 yVGMDmZBAK9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmRrfLDmuMf29n.diag
[2026-03-10 22:23:33] -rw-r--r-- 1 boinc boinc      8749 Mar 10 22:23 runtime_log.err
[2026-03-10 22:23:33] -rw-r--r-- 1 boinc boinc     12248 Mar 10 22:23 stderr.txt
[2026-03-10 22:23:33] No HITS result produced
[2026-03-10 22:23:33]  *** Contents of shared directory: ***
[2026-03-10 22:23:33] total 428596
[2026-03-10 22:23:33] -rw-r--r-- 2 boinc boinc 437382017 Mar 10 21:14 ATLAS.root_0
[2026-03-10 22:23:33] -rw-r--r-- 2 boinc boinc    597950 Mar 10 21:14 input.tar.gz
[2026-03-10 22:23:33] -rw-r--r-- 2 boinc boinc     15845 Mar 10 21:14 start_atlas.sh
[2026-03-10 22:23:33] -rw------- 1 boinc boinc    880640 Mar 10 22:23 result.tar.gz
22:23:54 (381519): run_atlas exited; CPU time 14655.419982
22:23:54 (381519): called boinc_finish(0)

</stderr_txt>
]]>

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