Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
10:38:03 (2972156): wrapper (7.7.26015): starting
10:38:03 (2972156): wrapper: running run_atlas (--nthreads 12)
[2026-03-10 10:38:03] Arguments: --nthreads 12
[2026-03-10 10:38:03] Threads: 12
[2026-03-10 10:38:03] Checking for CVMFS
[2026-03-10 10:38:03] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-10 10:38:03] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-10 10:38:03] Running cvmfs_config stat atlas.cern.ch
[2026-03-10 10:38:03] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-10 10:38:03] 2.11.0.0 1685782 240 68736 157111 0 188 3597659 6144001 13486 130560 0 3202559 99.999 12704 384 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.248.156:3126 1
[2026-03-10 10:38:03] CVMFS is ok
[2026-03-10 10:38:03] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-10 10:38:03] Checking for apptainer binary...
[2026-03-10 10:38:03] apptainer is not installed, using version from CVMFS
[2026-03-10 10:38:03] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-10 10:38:04] radiat0r
[2026-03-10 10:38:04] apptainer works
[2026-03-10 10:38:04] Set ATHENA_PROC_NUMBER=12
[2026-03-10 10:38:04] Set ATHENA_CORE_NUMBER=12
[2026-03-10 10:38:04] Starting ATLAS job with PandaID=7035830059
[2026-03-10 10:38:04] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/19 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-10 11:48:39]  *** The last 200 lines of the pilot log: ***
[2026-03-10 11:48:39]  filesize=370029
[2026-03-10 11:48:39]  filetype=log
[2026-03-10 11:48:39]  guid=a119535a-8cdf-446a-9a73-3a784a7a2f3e
[2026-03-10 11:48:39]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-03-10 11:48:39]  is_altstaged=None
[2026-03-10 11:48:39]  is_tar=False
[2026-03-10 11:48:39]  lfn=log.48845595._000005.job.log.tgz.1
[2026-03-10 11:48:39]  mtime=0
[2026-03-10 11:48:39]  protocol_id=None
[2026-03-10 11:48:39]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-03-10 11:48:39]  replicas=None
[2026-03-10 11:48:39]  scope=mc23_13p6TeV
[2026-03-10 11:48:39]  status=None
[2026-03-10 11:48:39]  status_code=0
[2026-03-10 11:48:39]  storage_token=
[2026-03-10 11:48:39]  surl=/var/lib/boinc/slots/19/PanDA_Pilot-7035830059/log.48845595._000005.job.log.tgz.1
[2026-03-10 11:48:39]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/e4/a5/log.48845595._000005.job.log.tgz.1
[2026-03-10 11:48:39]  workdir=None
[2026-03-10 11:48:39] ]
[2026-03-10 11:48:39] 2026-03-10 11:47:55,929 | INFO     | transferring file log.48845595._000005.job.log.tgz.1 from /var/lib/boinc/slots/19/PanDA_Pilot-7035830059/log.48845595._000005.job.log.tgz.1 to /var/lib/boinc/slots
[2026-03-10 11:48:39] 2026-03-10 11:47:55,929 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/19/PanDA_Pilot-7035830059/log.48845595._000005.job.log.tgz.1 /var/lib/boinc/slots/19/log.48845595._000005.j
[2026-03-10 11:48:39] 2026-03-10 11:47:55,957 | INFO     | adding to output.list: log.48845595._000005.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/e4/a5/log.48845595._000005.job.log.tg
[2026-03-10 11:48:39] 2026-03-10 11:47:55,957 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-10 11:48:39] 2026-03-10 11:47:55,958 | INFO     | summary of transferred files:
[2026-03-10 11:48:39] 2026-03-10 11:47:55,958 | INFO     |  -- lfn=log.48845595._000005.job.log.tgz.1, status_code=0, status=transferred
[2026-03-10 11:48:39] 2026-03-10 11:47:55,958 | INFO     | stage-out finished correctly
[2026-03-10 11:48:39] 2026-03-10 11:47:56,413 | INFO     | time since job start (4170s) is within the limit (349056.0s)
[2026-03-10 11:48:39] 2026-03-10 11:47:57,531 | INFO     | monitor loop #301: job 0:7035830059 is in state 'finished'
[2026-03-10 11:48:39] 2026-03-10 11:47:57,531 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-03-10 11:48:39] 2026-03-10 11:47:58,419 | INFO     | time since job start (4172s) is within the limit (349056.0s)
[2026-03-10 11:48:39] 2026-03-10 11:47:58,735 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-10 11:48:39] 2026-03-10 11:47:59,346 | INFO     | job 7035830059 has state=finished
[2026-03-10 11:48:39] 2026-03-10 11:47:59,346 | INFO     | preparing for final server update for job 7035830059 in state='finished'
[2026-03-10 11:48:39] 2026-03-10 11:47:59,346 | INFO     | reading metadata from: /var/lib/boinc/slots/19/PanDA_Pilot-7035830059/jobReport.json
[2026-03-10 11:48:39] 2026-03-10 11:47:59,349 | INFO     | added worker_node to metadata from /var/lib/boinc/slots/19/workernode_map.json
[2026-03-10 11:48:39] 2026-03-10 11:47:59,350 | INFO     | this job has now completed (state=finished)
[2026-03-10 11:48:39] 2026-03-10 11:47:59,350 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-10 11:48:39] 2026-03-10 11:47:59,350 | INFO     | log transfer has been attempted: DONE
[2026-03-10 11:48:39] 2026-03-10 11:47:59,350 | INFO     | job 7035830059 has finished - writing final server update
[2026-03-10 11:48:39] 2026-03-10 11:47:59,350 | INFO     | total number of processed events: 400 (read)
[2026-03-10 11:48:39] 2026-03-10 11:47:59,428 | INFO     | using path: /var/lib/boinc/slots/19/PanDA_Pilot-7035830059/memory_monitor_summary.json (trf name=prmon)
[2026-03-10 11:48:39] 2026-03-10 11:47:59,429 | INFO     | extracted standard info from prmon json
[2026-03-10 11:48:39] 2026-03-10 11:47:59,429 | INFO     | extracted standard memory fields from prmon json
[2026-03-10 11:48:39] 2026-03-10 11:47:59,429 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-10 11:48:39] 2026-03-10 11:47:59,429 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-10 11:48:39] 2026-03-10 11:47:59,429 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-10 11:48:39] 2026-03-10 11:47:59,431 | INFO     | fitting pss+swap vs Time
[2026-03-10 11:48:39] 2026-03-10 11:47:59,431 | INFO     | sum of square deviations: 70364110.0
[2026-03-10 11:48:39] 2026-03-10 11:47:59,431 | INFO     | sum of deviations: 2380220915.0
[2026-03-10 11:48:39] 2026-03-10 11:47:59,431 | INFO     | mean x: 1773141269.0
[2026-03-10 11:48:39] 2026-03-10 11:47:59,431 | INFO     | mean y: 2718559.9344262294
[2026-03-10 11:48:39] 2026-03-10 11:47:59,431 | INFO     | intersect: -59977688123.57854
[2026-03-10 11:48:39] 2026-03-10 11:47:59,432 | INFO     | chi2: 0.03926727304189821
[2026-03-10 11:48:39] 2026-03-10 11:47:59,432 | INFO     | current memory leak: 33.83 B/s (using 61 data points, chi2=0.04)
[2026-03-10 11:48:39] 2026-03-10 11:47:59,432 | INFO     | could have reported an average CPU frequency of 2340 MHz (6 samples)
[2026-03-10 11:48:39] 2026-03-10 11:47:59,432 | INFO     | ..............................
[2026-03-10 11:48:39] 2026-03-10 11:47:59,432 | INFO     | . Timing measurements:
[2026-03-10 11:48:39] 2026-03-10 11:47:59,432 | INFO     | . get job = 0 s
[2026-03-10 11:48:39] 2026-03-10 11:47:59,432 | INFO     | . initial setup = 9 s
[2026-03-10 11:48:39] 2026-03-10 11:47:59,432 | INFO     | . payload setup = 8 s
[2026-03-10 11:48:39] 2026-03-10 11:47:59,432 | INFO     | . stage-in = 0 s
[2026-03-10 11:48:39] 2026-03-10 11:47:59,433 | INFO     | . payload execution = 4144 s
[2026-03-10 11:48:39] 2026-03-10 11:47:59,433 | INFO     | . stage-out = 0 s
[2026-03-10 11:48:39] 2026-03-10 11:47:59,433 | INFO     | . log creation = 0 s
[2026-03-10 11:48:39] 2026-03-10 11:47:59,433 | INFO     | ..............................
[2026-03-10 11:48:39] 2026-03-10 11:47:59,782 | INFO     | 
[2026-03-10 11:48:39] 2026-03-10 11:47:59,782 | INFO     | job summary report
[2026-03-10 11:48:39] 2026-03-10 11:47:59,782 | INFO     | --------------------------------------------------
[2026-03-10 11:48:39] 2026-03-10 11:47:59,783 | INFO     | PanDA job id: 7035830059
[2026-03-10 11:48:39] 2026-03-10 11:47:59,783 | INFO     | task id: 48845595
[2026-03-10 11:48:39] 2026-03-10 11:47:59,783 | INFO     | errors: (none)
[2026-03-10 11:48:39] 2026-03-10 11:47:59,783 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-10 11:48:39] 2026-03-10 11:47:59,783 | INFO     | pilot state: finished 
[2026-03-10 11:48:39] 2026-03-10 11:47:59,783 | INFO     | transexitcode: 0
[2026-03-10 11:48:39] 2026-03-10 11:47:59,783 | INFO     | exeerrorcode: 0
[2026-03-10 11:48:39] 2026-03-10 11:47:59,783 | INFO     | exeerrordiag: 
[2026-03-10 11:48:39] 2026-03-10 11:47:59,783 | INFO     | exitcode: 0
[2026-03-10 11:48:39] 2026-03-10 11:47:59,783 | INFO     | exitmsg: OK
[2026-03-10 11:48:39] 2026-03-10 11:47:59,783 | INFO     | cpuconsumptiontime: 44955 s
[2026-03-10 11:48:39] 2026-03-10 11:47:59,784 | INFO     | nevents: 400
[2026-03-10 11:48:39] 2026-03-10 11:47:59,784 | INFO     | neventsw: 0
[2026-03-10 11:48:39] 2026-03-10 11:47:59,784 | INFO     | pid: 2982449
[2026-03-10 11:48:39] 2026-03-10 11:47:59,784 | INFO     | pgrp: 2982449
[2026-03-10 11:48:39] 2026-03-10 11:47:59,784 | INFO     | corecount: 12
[2026-03-10 11:48:39] 2026-03-10 11:47:59,784 | INFO     | event service: False
[2026-03-10 11:48:39] 2026-03-10 11:47:59,784 | INFO     | sizes: {0: 2279873, 1: 2280334, 11: 2280334, 4157: 2306240, 4158: 2315295, 4161: 2315295, 4162: 2315617}
[2026-03-10 11:48:39] 2026-03-10 11:47:59,784 | INFO     | --------------------------------------------------
[2026-03-10 11:48:39] 2026-03-10 11:47:59,784 | INFO     | 
[2026-03-10 11:48:39] 2026-03-10 11:47:59,784 | INFO     | executing command: ls -lF /var/lib/boinc/slots/19
[2026-03-10 11:48:39] 2026-03-10 11:47:59,821 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-10 11:48:39] 2026-03-10 11:47:59,822 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-10 11:48:39] 2026-03-10 11:47:59,822 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-10 11:48:39] 2026-03-10 11:47:59,822 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-10 11:48:39] 2026-03-10 11:47:59,822 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-10 11:48:39] 2026-03-10 11:47:59,822 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-10 11:48:39] 2026-03-10 11:47:59,822 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-10 11:48:39] 2026-03-10 11:47:59,822 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-10 11:48:39] 2026-03-10 11:47:59,822 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-10 11:48:39] 2026-03-10 11:47:59,822 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-10 11:48:39] 2026-03-10 11:47:59,823 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-10 11:48:39] 2026-03-10 11:47:59,823 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-10 11:48:39] 2026-03-10 11:47:59,823 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-10 11:48:39] 2026-03-10 11:47:59,823 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-10 11:48:39] 2026-03-10 11:47:59,823 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-10 11:48:39] 2026-03-10 11:47:59,823 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-10 11:48:39] 2026-03-10 11:47:59,823 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-10 11:48:39] 2026-03-10 11:47:59,823 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-10 11:48:39] 2026-03-10 11:47:59,823 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-10 11:48:39] 2026-03-10 11:47:59,823 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-10 11:48:39] 2026-03-10 11:47:59,824 | INFO     | job 7035830059 has completed (purged errors)
[2026-03-10 11:48:39] 2026-03-10 11:47:59,824 | INFO     | overall cleanup function is called
[2026-03-10 11:48:39] 2026-03-10 11:48:00,834 | INFO     | --- collectZombieJob: --- 10, [2982449]
[2026-03-10 11:48:39] 2026-03-10 11:48:00,834 | INFO     | zombie collector waiting for pid 2982449
[2026-03-10 11:48:39] 2026-03-10 11:48:00,835 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-10 11:48:39] 2026-03-10 11:48:00,835 | INFO     | collected zombie processes
[2026-03-10 11:48:39] 2026-03-10 11:48:00,835 | INFO     | will attempt to kill all subprocesses of pid=2982449
[2026-03-10 11:48:39] 2026-03-10 11:48:01,234 | INFO     | process IDs to be killed: [2982449] (in reverse order)
[2026-03-10 11:48:39] 2026-03-10 11:48:01,386 | WARNING  | found no corresponding commands to process id(s)
[2026-03-10 11:48:39] 2026-03-10 11:48:01,387 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-10 11:48:39] 2026-03-10 11:48:01,407 | INFO     | did not find any defunct processes belonging to 2982449
[2026-03-10 11:48:39] 2026-03-10 11:48:01,426 | INFO     | did not find any defunct processes belonging to 2982449
[2026-03-10 11:48:39] 2026-03-10 11:48:01,426 | INFO     | ready for new job
[2026-03-10 11:48:39] 2026-03-10 11:48:01,426 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-10 11:48:39] 2026-03-10 11:48:01,428 | INFO     | **************************************
[2026-03-10 11:48:39] 2026-03-10 11:48:01,428 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-10 11:48:39] 2026-03-10 11:48:01,428 | INFO     | **************************************
[2026-03-10 11:48:39] 2026-03-10 11:48:01,428 | INFO     | 
[2026-03-10 11:48:39] 2026-03-10 11:48:01,464 | INFO     | architecture information:
[2026-03-10 11:48:39] 2026-03-10 11:48:01,464 | INFO     | executing command: cat /etc/os-release
[2026-03-10 11:48:39] 2026-03-10 11:48:01,489 | INFO     | cat /etc/os-release:
[2026-03-10 11:48:39] NAME="CentOS Linux"
[2026-03-10 11:48:39] VERSION="7 (Core)"
[2026-03-10 11:48:39] ID="centos"
[2026-03-10 11:48:39] ID_LIKE="rhel fedora"
[2026-03-10 11:48:39] VERSION_ID="7"
[2026-03-10 11:48:39] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-10 11:48:39] ANSI_COLOR="0;31"
[2026-03-10 11:48:39] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-10 11:48:39] HOME_URL="https://www.centos.org/"
[2026-03-10 11:48:39] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-10 11:48:39] 
[2026-03-10 11:48:39] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-10 11:48:39] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-10 11:48:39] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-10 11:48:39] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-10 11:48:39] 
[2026-03-10 11:48:39] 2026-03-10 11:48:01,489 | INFO     | **************************************
[2026-03-10 11:48:39] 2026-03-10 11:48:01,992 | INFO     | executing command: df -mP /var/lib/boinc/slots/19
[2026-03-10 11:48:39] 2026-03-10 11:48:02,024 | INFO     | sufficient remaining disk space (1718728261632 B)
[2026-03-10 11:48:39] 2026-03-10 11:48:02,024 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-10 11:48:39] 2026-03-10 11:48:02,024 | INFO     | current server update state: UPDATING_FINAL
[2026-03-10 11:48:39] 2026-03-10 11:48:02,024 | INFO     | update_server=False
[2026-03-10 11:48:39] 2026-03-10 11:48:02,024 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-10 11:48:39] 2026-03-10 11:48:02,025 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-10 11:48:39] 2026-03-10 11:48:02,025 | INFO     | aborting loop
[2026-03-10 11:48:39] 2026-03-10 11:48:02,025 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-10 11:48:39] 2026-03-10 11:48:02,122 | INFO     | all data control threads have been joined
[2026-03-10 11:48:39] 2026-03-10 11:48:02,724 | INFO     | all job control threads have been joined
[2026-03-10 11:48:39] 2026-03-10 11:48:03,030 | INFO     | [job] retrieve thread has finished
[2026-03-10 11:48:39] 2026-03-10 11:48:03,030 | INFO     | all payload control threads have been joined
[2026-03-10 11:48:39] 2026-03-10 11:48:03,031 | INFO     | [job] job monitor thread has finished
[2026-03-10 11:48:39] 2026-03-10 11:48:03,128 | INFO     | [data] control thread has finished
[2026-03-10 11:48:39] 2026-03-10 11:48:03,285 | INFO     | [data] copytool_in thread has finished
[2026-03-10 11:48:39] 2026-03-10 11:48:03,411 | INFO     | [payload] execute_payloads thread has finished
[2026-03-10 11:48:39] 2026-03-10 11:48:03,526 | INFO     | [payload] failed_post thread has finished
[2026-03-10 11:48:39] 2026-03-10 11:48:03,730 | INFO     | [job] control thread has finished
[2026-03-10 11:48:39] 2026-03-10 11:48:04,031 | INFO     | [data] copytool_out thread has finished
[2026-03-10 11:48:39] 2026-03-10 11:48:04,037 | INFO     | [payload] control thread has finished
[2026-03-10 11:48:39] 2026-03-10 11:48:04,112 | INFO     | [job] validate thread has finished
[2026-03-10 11:48:39] 2026-03-10 11:48:04,146 | INFO     | [job] create_data_payload thread has finished
[2026-03-10 11:48:39] 2026-03-10 11:48:04,237 | INFO     | [payload] validate_post thread has finished
[2026-03-10 11:48:39] 2026-03-10 11:48:04,308 | INFO     | [payload] validate_pre thread has finished
[2026-03-10 11:48:39] 2026-03-10 11:48:04,500 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-10 11:48:39] 2026-03-10 11:48:04,801 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-10 11:48:39] 2026-03-10 11:48:05,505 | INFO     | [job] queue monitor thread has finished
[2026-03-10 11:48:39] 2026-03-10 11:48:08,807 | INFO     | [data] queue_monitor thread has finished
[2026-03-10 11:48:39] 2026-03-10 11:48:12,609 | INFO     | job.realtimelogging is not enabled
[2026-03-10 11:48:39] 2026-03-10 11:48:13,614 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-10 11:48:39] 2026-03-10 11:48:31,992 | INFO     | PID=2976871 has CPU usage=6.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-10 11:48:39] 2026-03-10 11:48:31,992 | INFO     | found 0 job(s) in 20 queues
[2026-03-10 11:48:39] 2026-03-10 11:48:31,992 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-10 11:48:39] 2026-03-10 11:48:31,992 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-10 11:48:39] 2026-03-10 11:48:32,038 | INFO     | [monitor] cgroup control has ended
[2026-03-10 11:48:39] 2026-03-10 11:48:34,060 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139640303671104)>', '<ExcThread(monitor, started 139639520229120)>']
[2026-03-10 11:48:39] 2026-03-10 11:48:35,008 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-10 11:48:39] 2026-03-10 11:48:35,008 | INFO     | [monitor] control thread has ended
[2026-03-10 11:48:39] 2026-03-10 11:48:39,086 | INFO     | all workflow threads have been joined
[2026-03-10 11:48:39] 2026-03-10 11:48:39,086 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-10 11:48:39] 2026-03-10 11:48:39,087 | INFO     | traces error code: 0
[2026-03-10 11:48:39] 2026-03-10 11:48:39,087 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-10 11:48:39] 2026-03-10 11:48:39,229 [wrapper] ==== pilot stdout END ====
[2026-03-10 11:48:39] 2026-03-10 11:48:39,234 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-10 11:48:39] 2026-03-10 11:48:39,238 [wrapper] pilotpid: 2976871
[2026-03-10 11:48:39] 2026-03-10 11:48:39,242 [wrapper] Pilot exit status: 0
[2026-03-10 11:48:39] 2026-03-10 11:48:39,258 [wrapper] pandaids: 7035830059
[2026-03-10 11:48:39] 2026-03-10 11:48:39,378 [wrapper] cleanup supervisor_pilot 3087858 2976872
[2026-03-10 11:48:39] 2026-03-10 11:48:39,382 [wrapper] Test setup, not cleaning
[2026-03-10 11:48:39] 2026-03-10 11:48:39,387 [wrapper] apfmon messages muted
[2026-03-10 11:48:39] 2026-03-10 11:48:39,391 [wrapper] ==== wrapper stdout END ====
[2026-03-10 11:48:39] 2026-03-10 11:48:39,396 [wrapper] ==== wrapper stderr END ====
[2026-03-10 11:48:39]  *** Error codes and diagnostics ***
[2026-03-10 11:48:39]     "exeErrorCode": 0,
[2026-03-10 11:48:39]     "exeErrorDiag": "",
[2026-03-10 11:48:39]     "pilotErrorCode": 0,
[2026-03-10 11:48:39]     "pilotErrorDiag": "",
[2026-03-10 11:48:39]  *** Listing of results directory ***
[2026-03-10 11:48:39] total 547932
[2026-03-10 11:48:39] -rw-r--r-- 1 boinc boinc    584627 Mar  2 04:46 pilot3.tar.gz
[2026-03-10 11:48:39] -rwx------ 1 boinc boinc     36322 Mar  2 04:50 runpilot2-wrapper.sh
[2026-03-10 11:48:39] -rw-r--r-- 1 boinc boinc      5111 Mar  2 04:51 queuedata.json
[2026-03-10 11:48:39] -rw-r--r-- 1 boinc boinc       100 Mar 10 10:38 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-10 11:48:39] -rwxr-xr-x 1 boinc boinc      7986 Mar 10 10:38 run_atlas
[2026-03-10 11:48:39] -rw-r--r-- 1 boinc boinc       105 Mar 10 10:38 job.xml
[2026-03-10 11:48:39] -rw-r--r-- 2 boinc boinc     15845 Mar 10 10:38 start_atlas.sh
[2026-03-10 11:48:39] drwxrwx--x 2 boinc boinc      4096 Mar 10 10:38 shared
[2026-03-10 11:48:39] -rw-r--r-- 2 boinc boinc    597962 Mar 10 10:38 input.tar.gz
[2026-03-10 11:48:39] -rw-r--r-- 1 boinc boinc      9415 Mar 10 10:38 init_data.xml
[2026-03-10 11:48:39] -rw-r--r-- 2 boinc boinc 287576342 Mar 10 10:38 EVNT.48450370._000001.pool.root.1
[2026-03-10 11:48:39] -rw-r--r-- 1 boinc boinc         0 Mar 10 10:38 boinc_setup_complete
[2026-03-10 11:48:39] -rw-r--r-- 1 boinc boinc         0 Mar 10 10:38 boinc_lockfile
[2026-03-10 11:48:39] -rw-r--r-- 1 boinc boinc      2621 Mar 10 10:38 pandaJob.out
[2026-03-10 11:48:39] -rw------- 1 boinc boinc   1005414 Mar 10 10:38 agis_schedconf.cvmfs.json
[2026-03-10 11:48:39] -rw------- 1 boinc boinc   1511578 Mar 10 10:38 agis_ddmendpoints.agis.ALL.json
[2026-03-10 11:48:39] -rw------- 1 boinc boinc       421 Mar 10 10:38 workernode_map.json
[2026-03-10 11:48:39] drwx------ 5 boinc boinc      4096 Mar 10 10:38 pilot3
[2026-03-10 11:48:39] -rw------- 1 boinc boinc 267604658 Mar 10 11:47 HITS.48845595._000005.pool.root.1
[2026-03-10 11:48:39] -rw-r--r-- 1 boinc boinc       529 Mar 10 11:47 boinc_task_state.xml
[2026-03-10 11:48:39] -rw------- 1 boinc boinc        95 Mar 10 11:47 pilot_heartbeat.json
[2026-03-10 11:48:39] -rw------- 1 boinc boinc      1024 Mar 10 11:47 memory_monitor_summary.json
[2026-03-10 11:48:39] -rw------- 1 boinc boinc    370029 Mar 10 11:47 log.48845595._000005.job.log.tgz.1
[2026-03-10 11:48:39] -rw------- 1 boinc boinc      6274 Mar 10 11:47 heartbeat.json
[2026-03-10 11:48:39] -rw-r--r-- 1 boinc boinc      8192 Mar 10 11:48 boinc_mmap_file
[2026-03-10 11:48:39] -rw-r--r-- 1 boinc boinc        27 Mar 10 11:48 wrapper_checkpoint.txt
[2026-03-10 11:48:39] -rw------- 1 boinc boinc      4819 Mar 10 11:48 pilotlog.txt
[2026-03-10 11:48:39] -rw------- 1 boinc boinc    607102 Mar 10 11:48 log.48845595._000005.job.log.1
[2026-03-10 11:48:39] -rw------- 1 boinc boinc       357 Mar 10 11:48 output.list
[2026-03-10 11:48:39] -rw-r--r-- 1 boinc boinc       620 Mar 10 11:48 runtime_log
[2026-03-10 11:48:39] -rw------- 1 boinc boinc    993280 Mar 10 11:48 result.tar.gz
[2026-03-10 11:48:39] -rw------- 1 boinc boinc       643 Mar 10 11:48 vGMMDmiPAH9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmwdCLDm5y1cin.diag
[2026-03-10 11:48:39] -rw-r--r-- 1 boinc boinc      8787 Mar 10 11:48 runtime_log.err
[2026-03-10 11:48:39] -rw-r--r-- 1 boinc boinc     20930 Mar 10 11:48 stderr.txt
[2026-03-10 11:48:39] HITS file was successfully produced:
[2026-03-10 11:48:39] -rw------- 1 boinc boinc 267604658 Mar 10 11:47 shared/HITS.pool.root.1
[2026-03-10 11:48:39]  *** Contents of shared directory: ***
[2026-03-10 11:48:39] total 543756
[2026-03-10 11:48:39] -rw-r--r-- 2 boinc boinc     15845 Mar 10 10:38 start_atlas.sh
[2026-03-10 11:48:39] -rw-r--r-- 2 boinc boinc    597962 Mar 10 10:38 input.tar.gz
[2026-03-10 11:48:39] -rw-r--r-- 2 boinc boinc 287576342 Mar 10 10:38 ATLAS.root_0
[2026-03-10 11:48:39] -rw------- 1 boinc boinc 267604658 Mar 10 11:47 HITS.pool.root.1
[2026-03-10 11:48:39] -rw------- 1 boinc boinc    993280 Mar 10 11:48 result.tar.gz
11:48:41 (2972156): run_atlas exited; CPU time 45140.783969
11:48:41 (2972156): called boinc_finish(0)

</stderr_txt>
]]>

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