Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
10:06:12 (479982): wrapper (7.7.26015): starting
10:06:12 (479982): wrapper: running run_atlas (--nthreads 4)
[2026-03-11 10:06:12] Arguments: --nthreads 4
[2026-03-11 10:06:12] Threads: 4
[2026-03-11 10:06:12] Checking for CVMFS
[2026-03-11 10:06:12] No cvmfs_config command found, will try listing directly
[2026-03-11 10:06:12] CVMFS is ok
[2026-03-11 10:06:12] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-11 10:06:12] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-11 10:06:12] Further information can be found at the LHC@home message board.
[2026-03-11 10:06:12] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-11 10:06:12] Checking for apptainer binary...
[2026-03-11 10:06:12] which: no apptainer in ((null))
[2026-03-11 10:06:12] apptainer is not installed, using version from CVMFS
[2026-03-11 10:06:12] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-11 10:06:13] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot164/slots/1/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut23.grid.cesnet.cz
[2026-03-11 10:06:13] apptainer works
[2026-03-11 10:06:13] Set ATHENA_PROC_NUMBER=4
[2026-03-11 10:06:13] Set ATHENA_CORE_NUMBER=4
[2026-03-11 10:06:13] Starting ATLAS job with PandaID=7035830766
[2026-03-11 10:06:13] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot164/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-11 12:06:42]  *** The last 200 lines of the pilot log: ***
[2026-03-11 12:06:42] 2026-03-11 11:05:58,733 | INFO     | extracted standard memory fields from prmon json
[2026-03-11 12:06:42] 2026-03-11 11:05:58,733 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-11 12:06:42] 2026-03-11 11:05:58,733 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-11 12:06:42] 2026-03-11 11:05:58,734 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-11 12:06:42] 2026-03-11 11:05:58,735 | INFO     | fitting pss+swap vs Time
[2026-03-11 12:06:42] 2026-03-11 11:05:58,735 | INFO     | sum of square deviations: 509440249.5
[2026-03-11 12:06:42] 2026-03-11 11:05:58,735 | INFO     | sum of deviations: 7805773561.000001
[2026-03-11 12:06:42] 2026-03-11 11:05:58,736 | INFO     | mean x: 1773223574.5
[2026-03-11 12:06:42] 2026-03-11 11:05:58,736 | INFO     | mean y: 2317703.338983051
[2026-03-11 12:06:42] 2026-03-11 11:05:58,736 | INFO     | intersect: -27167466602.394432
[2026-03-11 12:06:42] 2026-03-11 11:05:58,736 | INFO     | chi2: 1.8288528599622977
[2026-03-11 12:06:42] 2026-03-11 11:05:58,736 | INFO     | sum of square deviations: 447383272.0
[2026-03-11 12:06:42] 2026-03-11 11:05:58,736 | INFO     | sum of deviations: 14178351695.0
[2026-03-11 12:06:42] 2026-03-11 11:05:58,736 | INFO     | mean x: 1773223422.0
[2026-03-11 12:06:42] 2026-03-11 11:05:58,736 | INFO     | mean y: 2332770.5398230087
[2026-03-11 12:06:42] 2026-03-11 11:05:58,736 | INFO     | intersect: -56194192411.40171
[2026-03-11 12:06:42] 2026-03-11 11:05:58,736 | INFO     | chi2: 1.1228459371688837
[2026-03-11 12:06:42] 2026-03-11 11:05:58,736 | INFO     | current chi2=1.1228459371688837 (change=38.60381216277665 %)
[2026-03-11 12:06:42] 2026-03-11 11:05:58,736 | INFO     | sum of square deviations: 390582207.0
[2026-03-11 12:06:42] 2026-03-11 11:05:58,737 | INFO     | sum of deviations: 13386281487.499998
[2026-03-11 12:06:42] 2026-03-11 11:05:58,737 | INFO     | mean x: 1773223269.5
[2026-03-11 12:06:42] 2026-03-11 11:05:58,737 | INFO     | mean y: 2330642.6018518517
[2026-03-11 12:06:42] 2026-03-11 11:05:58,737 | INFO     | intersect: -60770703561.98001
[2026-03-11 12:06:42] 2026-03-11 11:05:58,737 | INFO     | chi2: 1.1241717743878683
[2026-03-11 12:06:42] 2026-03-11 11:05:58,737 | INFO     | current chi2=1.1241717743878683 (change=-0.11807828439291841 %)
[2026-03-11 12:06:42] 2026-03-11 11:05:58,737 | INFO     | right removable region: 107
[2026-03-11 12:06:42] 2026-03-11 11:05:58,737 | INFO     | sum of square deviations: 447383272.0
[2026-03-11 12:06:42] 2026-03-11 11:05:58,737 | INFO     | sum of deviations: -4392711382.0
[2026-03-11 12:06:42] 2026-03-11 11:05:58,737 | INFO     | mean x: 1773223727.0
[2026-03-11 12:06:42] 2026-03-11 11:05:58,737 | INFO     | mean y: 2346944.867256637
[2026-03-11 12:06:42] 2026-03-11 11:05:58,737 | INFO     | intersect: 17413056141.936565
[2026-03-11 12:06:42] 2026-03-11 11:05:58,737 | INFO     | chi2: 0.7304344295550786
[2026-03-11 12:06:42] 2026-03-11 11:05:58,737 | INFO     | current chi2=0.7304344295550786 (change=60.0605141317855 %)
[2026-03-11 12:06:42] 2026-03-11 11:05:58,738 | INFO     | sum of square deviations: 390582207.0
[2026-03-11 12:06:42] 2026-03-11 11:05:58,738 | INFO     | sum of deviations: -4651692494.0
[2026-03-11 12:06:42] 2026-03-11 11:05:58,738 | INFO     | mean x: 1773223879.5
[2026-03-11 12:06:42] 2026-03-11 11:05:58,738 | INFO     | mean y: 2347631.388888889
[2026-03-11 12:06:42] 2026-03-11 11:05:58,738 | INFO     | intersect: 21120801218.425205
[2026-03-11 12:06:42] 2026-03-11 11:05:58,738 | INFO     | chi2: 0.7307444500136191
[2026-03-11 12:06:42] 2026-03-11 11:05:58,738 | INFO     | current chi2=0.7307444500136191 (change=-0.04244329757693502 %)
[2026-03-11 12:06:42] 2026-03-11 11:05:58,738 | INFO     | left removable region: 20
[2026-03-11 12:06:42] 2026-03-11 11:05:58,738 | INFO     | sum of square deviations: 204163828.0
[2026-03-11 12:06:42] 2026-03-11 11:05:58,738 | INFO     | sum of deviations: 849951979.0
[2026-03-11 12:06:42] 2026-03-11 11:05:58,738 | INFO     | mean x: 1773223849.0
[2026-03-11 12:06:42] 2026-03-11 11:05:58,738 | INFO     | mean y: 2367077.436781609
[2026-03-11 12:06:42] 2026-03-11 11:05:58,738 | INFO     | intersect: -7379719820.285116
[2026-03-11 12:06:42] 2026-03-11 11:05:58,739 | INFO     | chi2: 9.124650290098403e-05
[2026-03-11 12:06:42] 2026-03-11 11:05:58,739 | INFO     | current memory leak: 4.16 B/s (using 87 data points, chi2=0.00)
[2026-03-11 12:06:42] 2026-03-11 11:05:58,739 | INFO     | could have reported an average CPU frequency of 3592 MHz (7 samples)
[2026-03-11 12:06:42] 2026-03-11 11:05:58,739 | INFO     | ..............................
[2026-03-11 12:06:42] 2026-03-11 11:05:58,739 | INFO     | . Timing measurements:
[2026-03-11 12:06:42] 2026-03-11 11:05:58,739 | INFO     | . get job = 0 s
[2026-03-11 12:06:42] 2026-03-11 11:05:58,739 | INFO     | . initial setup = 5 s
[2026-03-11 12:06:42] 2026-03-11 11:05:58,739 | INFO     | . payload setup = 4 s
[2026-03-11 12:06:42] 2026-03-11 11:05:58,739 | INFO     | . stage-in = 0 s
[2026-03-11 12:06:42] 2026-03-11 11:05:58,739 | INFO     | . payload execution = 7151 s
[2026-03-11 12:06:42] 2026-03-11 11:05:58,739 | INFO     | . stage-out = 0 s
[2026-03-11 12:06:42] 2026-03-11 11:05:58,739 | INFO     | . log creation = 0 s
[2026-03-11 12:06:42] 2026-03-11 11:05:58,739 | INFO     | ..............................
[2026-03-11 12:06:42] 2026-03-11 11:05:58,786 | INFO     | 
[2026-03-11 12:06:42] 2026-03-11 11:05:58,786 | INFO     | job summary report
[2026-03-11 12:06:42] 2026-03-11 11:05:58,786 | INFO     | --------------------------------------------------
[2026-03-11 12:06:42] 2026-03-11 11:05:58,786 | INFO     | PanDA job id: 7035830766
[2026-03-11 12:06:42] 2026-03-11 11:05:58,786 | INFO     | task id: 48841995
[2026-03-11 12:06:42] 2026-03-11 11:05:58,787 | INFO     | errors: (none)
[2026-03-11 12:06:42] 2026-03-11 11:05:58,787 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-11 12:06:42] 2026-03-11 11:05:58,787 | INFO     | pilot state: finished 
[2026-03-11 12:06:42] 2026-03-11 11:05:58,787 | INFO     | transexitcode: 0
[2026-03-11 12:06:42] 2026-03-11 11:05:58,787 | INFO     | exeerrorcode: 0
[2026-03-11 12:06:42] 2026-03-11 11:05:58,787 | INFO     | exeerrordiag: 
[2026-03-11 12:06:42] 2026-03-11 11:05:58,787 | INFO     | exitcode: 0
[2026-03-11 12:06:42] 2026-03-11 11:05:58,787 | INFO     | exitmsg: OK
[2026-03-11 12:06:42] 2026-03-11 11:05:58,787 | INFO     | cpuconsumptiontime: 27577 s
[2026-03-11 12:06:42] 2026-03-11 11:05:58,787 | INFO     | nevents: 400
[2026-03-11 12:06:42] 2026-03-11 11:05:58,787 | INFO     | neventsw: 0
[2026-03-11 12:06:42] 2026-03-11 11:05:58,787 | INFO     | pid: 497457
[2026-03-11 12:06:42] 2026-03-11 11:05:58,787 | INFO     | pgrp: 497457
[2026-03-11 12:06:42] 2026-03-11 11:05:58,787 | INFO     | corecount: 4
[2026-03-11 12:06:42] 2026-03-11 11:05:58,787 | INFO     | event service: False
[2026-03-11 12:06:42] 2026-03-11 11:05:58,787 | INFO     | sizes: {0: 2279713, 1: 2280174, 11: 2280174, 7160: 2307459, 7161: 2316481, 7162: 2316859}
[2026-03-11 12:06:42] 2026-03-11 11:05:58,787 | INFO     | --------------------------------------------------
[2026-03-11 12:06:42] 2026-03-11 11:05:58,787 | INFO     | 
[2026-03-11 12:06:42] 2026-03-11 11:05:58,787 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot164/slots/1
[2026-03-11 12:06:42] 2026-03-11 11:05:58,800 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-11 12:06:42] 2026-03-11 11:05:58,801 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-11 12:06:42] 2026-03-11 11:05:58,801 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-11 12:06:42] 2026-03-11 11:05:58,801 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-11 12:06:42] 2026-03-11 11:05:58,801 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-11 12:06:42] 2026-03-11 11:05:58,801 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-11 12:06:42] 2026-03-11 11:05:58,801 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-11 12:06:42] 2026-03-11 11:05:58,801 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-11 12:06:42] 2026-03-11 11:05:58,801 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-11 12:06:42] 2026-03-11 11:05:58,801 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-11 12:06:42] 2026-03-11 11:05:58,801 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-11 12:06:42] 2026-03-11 11:05:58,801 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-11 12:06:42] 2026-03-11 11:05:58,801 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-11 12:06:42] 2026-03-11 11:05:58,801 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-11 12:06:42] 2026-03-11 11:05:58,801 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-11 12:06:42] 2026-03-11 11:05:58,801 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-11 12:06:42] 2026-03-11 11:05:58,801 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-11 12:06:42] 2026-03-11 11:05:58,801 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-11 12:06:42] 2026-03-11 11:05:58,801 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-11 12:06:42] 2026-03-11 11:05:58,801 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-11 12:06:42] 2026-03-11 11:05:58,801 | INFO     | job 7035830766 has completed (purged errors)
[2026-03-11 12:06:42] 2026-03-11 11:05:58,801 | INFO     | overall cleanup function is called
[2026-03-11 12:06:42] 2026-03-11 11:05:59,807 | INFO     | --- collectZombieJob: --- 10, [497457]
[2026-03-11 12:06:42] 2026-03-11 11:05:59,808 | INFO     | zombie collector waiting for pid 497457
[2026-03-11 12:06:42] 2026-03-11 11:05:59,808 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-11 12:06:42] 2026-03-11 11:05:59,808 | INFO     | collected zombie processes
[2026-03-11 12:06:42] 2026-03-11 11:05:59,808 | INFO     | will attempt to kill all subprocesses of pid=497457
[2026-03-11 12:06:42] 2026-03-11 11:06:00,272 | INFO     | process IDs to be killed: [497457] (in reverse order)
[2026-03-11 12:06:42] 2026-03-11 11:06:00,510 | WARNING  | found no corresponding commands to process id(s)
[2026-03-11 12:06:42] 2026-03-11 11:06:00,510 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-11 12:06:42] 2026-03-11 11:06:00,541 | INFO     | did not find any defunct processes belonging to 497457
[2026-03-11 12:06:42] 2026-03-11 11:06:00,570 | INFO     | did not find any defunct processes belonging to 497457
[2026-03-11 12:06:42] 2026-03-11 11:06:00,571 | INFO     | ready for new job
[2026-03-11 12:06:42] 2026-03-11 11:06:00,571 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-11 12:06:42] 2026-03-11 11:06:00,572 | INFO     | **************************************
[2026-03-11 12:06:42] 2026-03-11 11:06:00,572 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-11 12:06:42] 2026-03-11 11:06:00,572 | INFO     | **************************************
[2026-03-11 12:06:42] 2026-03-11 11:06:00,572 | INFO     | 
[2026-03-11 12:06:42] 2026-03-11 11:06:00,579 | INFO     | architecture information:
[2026-03-11 12:06:42] 2026-03-11 11:06:00,580 | INFO     | executing command: cat /etc/os-release
[2026-03-11 12:06:42] 2026-03-11 11:06:00,596 | INFO     | cat /etc/os-release:
[2026-03-11 12:06:42] NAME="CentOS Linux"
[2026-03-11 12:06:42] VERSION="7 (Core)"
[2026-03-11 12:06:42] ID="centos"
[2026-03-11 12:06:42] ID_LIKE="rhel fedora"
[2026-03-11 12:06:42] VERSION_ID="7"
[2026-03-11 12:06:42] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-11 12:06:42] ANSI_COLOR="0;31"
[2026-03-11 12:06:42] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-11 12:06:42] HOME_URL="https://www.centos.org/"
[2026-03-11 12:06:42] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-11 12:06:42] 
[2026-03-11 12:06:42] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-11 12:06:42] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-11 12:06:42] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-11 12:06:42] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-11 12:06:42] 
[2026-03-11 12:06:42] 2026-03-11 11:06:00,596 | INFO     | **************************************
[2026-03-11 12:06:42] 2026-03-11 11:06:01,099 | INFO     | executing command: df -mP /var/lib/boinc/var/slot164/slots/1
[2026-03-11 12:06:42] 2026-03-11 11:06:01,115 | INFO     | sufficient remaining disk space (30517755904 B)
[2026-03-11 12:06:42] 2026-03-11 11:06:01,115 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-11 12:06:42] 2026-03-11 11:06:01,115 | INFO     | current server update state: UPDATING_FINAL
[2026-03-11 12:06:42] 2026-03-11 11:06:01,115 | INFO     | update_server=False
[2026-03-11 12:06:42] 2026-03-11 11:06:01,115 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-11 12:06:42] 2026-03-11 11:06:01,115 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-11 12:06:42] 2026-03-11 11:06:01,498 | INFO     | all job control threads have been joined
[2026-03-11 12:06:42] 2026-03-11 11:06:02,011 | INFO     | all payload control threads have been joined
[2026-03-11 12:06:42] 2026-03-11 11:06:02,120 | INFO     | [job] retrieve thread has finished
[2026-03-11 12:06:42] 2026-03-11 11:06:02,196 | INFO     | all data control threads have been joined
[2026-03-11 12:06:42] 2026-03-11 11:06:02,504 | INFO     | [job] control thread has finished
[2026-03-11 12:06:42] 2026-03-11 11:06:02,677 | INFO     | [job] validate thread has finished
[2026-03-11 12:06:42] 2026-03-11 11:06:02,698 | INFO     | [payload] validate_pre thread has finished
[2026-03-11 12:06:42] 2026-03-11 11:06:02,701 | INFO     | [job] create_data_payload thread has finished
[2026-03-11 12:06:42] 2026-03-11 11:06:02,807 | INFO     | [payload] failed_post thread has finished
[2026-03-11 12:06:42] 2026-03-11 11:06:02,989 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-11 12:06:42] 2026-03-11 11:06:03,017 | INFO     | [payload] control thread has finished
[2026-03-11 12:06:42] 2026-03-11 11:06:03,085 | INFO     | [data] copytool_in thread has finished
[2026-03-11 12:06:42] 2026-03-11 11:06:03,121 | INFO     | [data] copytool_out thread has finished
[2026-03-11 12:06:42] 2026-03-11 11:06:03,153 | INFO     | [payload] execute_payloads thread has finished
[2026-03-11 12:06:42] 2026-03-11 11:06:03,201 | INFO     | [data] control thread has finished
[2026-03-11 12:06:42] 2026-03-11 11:06:03,446 | WARNING  | process 497457 can no longer be monitored (due to stat problems) - aborting
[2026-03-11 12:06:42] 2026-03-11 11:06:03,612 | INFO     | [payload] validate_post thread has finished
[2026-03-11 12:06:42] 2026-03-11 11:06:03,769 | INFO     | using path: /var/lib/boinc/var/slot164/slots/1/memory_monitor_summary.json (trf name=prmon)
[2026-03-11 12:06:42] 2026-03-11 11:06:03,799 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-11 12:06:42] 2026-03-11 11:06:03,834 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-11 12:06:42] 2026-03-11 11:06:04,253 | INFO     | number of running child processes to parent process 497457: 1
[2026-03-11 12:06:42] 2026-03-11 11:06:04,253 | INFO     | maximum number of monitored processes: 6
[2026-03-11 12:06:42] 2026-03-11 11:06:04,253 | INFO     | aborting job monitoring since job object (job id=7035830766) has expired
[2026-03-11 12:06:42] 2026-03-11 11:06:04,253 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-11 12:06:42] 2026-03-11 11:06:04,253 | INFO     | will abort loop
[2026-03-11 12:06:42] 2026-03-11 11:06:04,808 | INFO     | [job] queue monitor thread has finished
[2026-03-11 12:06:42] 2026-03-11 11:06:05,258 | INFO     | [job] job monitor thread has finished
[2026-03-11 12:06:42] 2026-03-11 11:06:07,844 | INFO     | [data] queue_monitor thread has finished
[2026-03-11 12:06:42] 2026-03-11 11:06:20,075 [wrapper] supervise_pilot (15 min periods counter: 9)
[2026-03-11 12:06:42] 2026-03-11 11:06:30,730 | INFO     | PID=484545 has CPU usage=9.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-11 12:06:42] 2026-03-11 11:06:30,734 | INFO     | .. there are 46 such processes running
[2026-03-11 12:06:42] 2026-03-11 11:06:30,734 | INFO     | found 0 job(s) in 20 queues
[2026-03-11 12:06:42] 2026-03-11 11:06:30,734 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-11 12:06:42] 2026-03-11 11:06:30,734 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-11 12:06:42] 2026-03-11 11:06:36,859 | INFO     | [monitor] cgroup control has ended
[2026-03-11 12:06:42] 2026-03-11 11:06:37,380 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23177491408704)>', '<ExcThread(monitor, started 23177180727040)>']
[2026-03-11 12:06:42] 2026-03-11 11:06:37,769 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-11 12:06:42] 2026-03-11 11:06:37,770 | INFO     | [monitor] control thread has ended
[2026-03-11 12:06:42] 2026-03-11 11:06:42,404 | INFO     | all workflow threads have been joined
[2026-03-11 12:06:42] 2026-03-11 11:06:42,408 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-11 12:06:42] 2026-03-11 11:06:42,408 | INFO     | traces error code: 0
[2026-03-11 12:06:42] 2026-03-11 11:06:42,408 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-11 12:06:42] 2026-03-11 11:06:42,622 [wrapper] ==== pilot stdout END ====
[2026-03-11 12:06:42] 2026-03-11 11:06:42,624 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-11 12:06:42] 2026-03-11 11:06:42,626 [wrapper] pilotpid: 484545
[2026-03-11 12:06:42] 2026-03-11 11:06:42,628 [wrapper] Pilot exit status: 0
[2026-03-11 12:06:42] 2026-03-11 11:06:42,636 [wrapper] pandaids: 7035830766
[2026-03-11 12:06:42] 2026-03-11 11:06:42,770 [wrapper] cleanup supervisor_pilot 1533217 484546
[2026-03-11 12:06:42] 2026-03-11 11:06:42,772 [wrapper] Test setup, not cleaning
[2026-03-11 12:06:42] 2026-03-11 11:06:42,774 [wrapper] apfmon messages muted
[2026-03-11 12:06:42] 2026-03-11 11:06:42,776 [wrapper] ==== wrapper stdout END ====
[2026-03-11 12:06:42] 2026-03-11 11:06:42,777 [wrapper] ==== wrapper stderr END ====
[2026-03-11 12:06:42]  *** Error codes and diagnostics ***
[2026-03-11 12:06:42]     "exeErrorCode": 0,
[2026-03-11 12:06:42]     "exeErrorDiag": "",
[2026-03-11 12:06:42]     "pilotErrorCode": 0,
[2026-03-11 12:06:42]     "pilotErrorDiag": "",
[2026-03-11 12:06:42]  *** Listing of results directory ***
[2026-03-11 12:06:42] total 572552
[2026-03-11 12:06:42] -rw-r--r--. 1 boinc boinc    584627 Mar  2 05:46 pilot3.tar.gz
[2026-03-11 12:06:42] -rwx------. 1 boinc boinc     36322 Mar  2 05:47 runpilot2-wrapper.sh
[2026-03-11 12:06:42] -rw-r--r--. 1 boinc boinc      5111 Mar  2 05:47 queuedata.json
[2026-03-11 12:06:42] -rw-r--r--. 1 boinc boinc       100 Mar 11 10:06 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-11 12:06:42] -rwxr-xr-x. 1 boinc boinc      7986 Mar 11 10:06 run_atlas
[2026-03-11 12:06:42] -rw-r--r--. 1 boinc boinc       105 Mar 11 10:06 job.xml
[2026-03-11 12:06:42] -rw-r--r--. 2 boinc boinc     15845 Mar 11 10:06 start_atlas.sh
[2026-03-11 12:06:42] drwxrwx--x. 2 boinc boinc      4096 Mar 11 10:06 shared
[2026-03-11 12:06:42] -rw-r--r--. 2 boinc boinc    597937 Mar 11 10:06 input.tar.gz
[2026-03-11 12:06:42] -rw-r--r--. 1 boinc boinc      6709 Mar 11 10:06 init_data.xml
[2026-03-11 12:06:42] -rw-r--r--. 2 boinc boinc 314061406 Mar 11 10:06 EVNT.48252743._000082.pool.root.1
[2026-03-11 12:06:42] -rw-r--r--. 1 boinc boinc         0 Mar 11 10:06 boinc_lockfile
[2026-03-11 12:06:42] -rw-r--r--. 1 boinc boinc      2492 Mar 11 10:06 pandaJob.out
[2026-03-11 12:06:42] -rw-------. 1 boinc boinc   1006970 Mar 11 10:06 agis_schedconf.cvmfs.json
[2026-03-11 12:06:42] -rw-------. 1 boinc boinc   1511578 Mar 11 10:06 agis_ddmendpoints.agis.ALL.json
[2026-03-11 12:06:42] -rw-------. 1 boinc boinc       445 Mar 11 10:06 workernode_map.json
[2026-03-11 12:06:42] drwx------. 5 boinc boinc      4096 Mar 11 10:06 pilot3
[2026-03-11 12:06:42] -rw-------. 1 boinc boinc 265643067 Mar 11 12:05 HITS.48841995._002071.pool.root.1
[2026-03-11 12:06:42] -rw-r--r--. 1 boinc boinc       529 Mar 11 12:05 boinc_task_state.xml
[2026-03-11 12:06:42] -rw-------. 1 boinc boinc      1031 Mar 11 12:05 memory_monitor_summary.json
[2026-03-11 12:06:42] -rw-------. 1 boinc boinc    301135 Mar 11 12:05 log.48841995._002071.job.log.tgz.1
[2026-03-11 12:06:42] -rw-------. 1 boinc boinc      6351 Mar 11 12:05 heartbeat.json
[2026-03-11 12:06:42] -rw-r--r--. 1 boinc boinc      8192 Mar 11 12:06 boinc_mmap_file
[2026-03-11 12:06:42] -rw-r--r--. 1 boinc boinc        27 Mar 11 12:06 wrapper_checkpoint.txt
[2026-03-11 12:06:42] -rw-------. 1 boinc boinc        95 Mar 11 12:06 pilot_heartbeat.json
[2026-03-11 12:06:42] -rw-------. 1 boinc boinc      5360 Mar 11 12:06 pilotlog.txt
[2026-03-11 12:06:42] -rw-------. 1 boinc boinc   1023093 Mar 11 12:06 log.48841995._002071.job.log.1
[2026-03-11 12:06:42] -rw-------. 1 boinc boinc       357 Mar 11 12:06 output.list
[2026-03-11 12:06:42] -rw-r--r--. 1 boinc boinc       620 Mar 11 12:06 runtime_log
[2026-03-11 12:06:42] -rw-------. 1 boinc boinc   1341440 Mar 11 12:06 result.tar.gz
[2026-03-11 12:06:42] -rw-r--r--. 1 boinc boinc      9221 Mar 11 12:06 runtime_log.err
[2026-03-11 12:06:42] -rw-------. 1 boinc boinc       663 Mar 11 12:06 7qqKDmbMAH9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmwXCLDmyRQbhm.diag
[2026-03-11 12:06:42] -rw-r--r--. 1 boinc boinc     20826 Mar 11 12:06 stderr.txt
[2026-03-11 12:06:42] HITS file was successfully produced:
[2026-03-11 12:06:42] -rw-------. 1 boinc boinc 265643067 Mar 11 12:05 shared/HITS.pool.root.1
[2026-03-11 12:06:42]  *** Contents of shared directory: ***
[2026-03-11 12:06:42] total 568044
[2026-03-11 12:06:42] -rw-r--r--. 2 boinc boinc     15845 Mar 11 10:06 start_atlas.sh
[2026-03-11 12:06:42] -rw-r--r--. 2 boinc boinc    597937 Mar 11 10:06 input.tar.gz
[2026-03-11 12:06:42] -rw-r--r--. 2 boinc boinc 314061406 Mar 11 10:06 ATLAS.root_0
[2026-03-11 12:06:42] -rw-------. 1 boinc boinc 265643067 Mar 11 12:05 HITS.pool.root.1
[2026-03-11 12:06:42] -rw-------. 1 boinc boinc   1341440 Mar 11 12:06 result.tar.gz
12:06:43 (479982): run_atlas exited; CPU time 27904.471795
12:06:43 (479982): called boinc_finish(0)

</stderr_txt>
]]>

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