Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
04:19:57 (10916): wrapper (7.7.26015): starting
04:19:57 (10916): wrapper: running run_atlas (--nthreads 8)
[2026-03-10 04:19:57] Arguments: --nthreads 8
[2026-03-10 04:19:57] Threads: 8
[2026-03-10 04:19:57] Checking for CVMFS
[2026-03-10 04:19:57] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-10 04:19:58] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-10 04:19:58] Running cvmfs_config stat atlas.cern.ch
[2026-03-10 04:19:58] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-10 04:19:58] 2.11.2.0 5808 319883 122500 157108 3 50 9973041 18432001 2749 130560 0 237335646 99.967 14660132 8667 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2026-03-10 04:19:58] CVMFS is ok
[2026-03-10 04:19:58] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-10 04:19:58] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-10 04:19:58] Further information can be found at the LHC@home message board.
[2026-03-10 04:19:58] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-10 04:19:58] Checking for apptainer binary...
[2026-03-10 04:19:58] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-10 04:19:58] Running /usr/bin/apptainer --version
[2026-03-10 04:19:58] apptainer version 1.3.2-1.el7
[2026-03-10 04:19:58] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-10 04:19:58] c-9-34.aglt2.org
[2026-03-10 04:19:58] apptainer works
[2026-03-10 04:19:59] Set ATHENA_PROC_NUMBER=8
[2026-03-10 04:19:59] Set ATHENA_CORE_NUMBER=8
[2026-03-10 04:19:59] Starting ATLAS job with PandaID=7035830916
[2026-03-10 04:19:59] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
05:14:08 (39345): wrapper (7.7.26015): starting
05:14:08 (39345): wrapper: running run_atlas (--nthreads 8)
[2026-03-10 05:14:08] Arguments: --nthreads 8
[2026-03-10 05:14:08] Threads: 8
[2026-03-10 05:14:08] This job has been restarted, cleaning up previous attempt
[2026-03-10 05:14:08] Checking for CVMFS
[2026-03-10 05:14:08] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-10 05:14:08] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-10 05:14:08] Running cvmfs_config stat atlas.cern.ch
[2026-03-10 05:14:08] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-10 05:14:08] 2.11.2.0 5808 319937 127280 157108 0 188 9974084 18432000 1 130560 0 237438682 99.967 14660208 8667 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2026-03-10 05:14:08] CVMFS is ok
[2026-03-10 05:14:08] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-10 05:14:08] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-10 05:14:08] Further information can be found at the LHC@home message board.
[2026-03-10 05:14:08] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-10 05:14:08] Checking for apptainer binary...
[2026-03-10 05:14:08] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-10 05:14:08] Running /usr/bin/apptainer --version
[2026-03-10 05:14:08] apptainer version 1.3.2-1.el7
[2026-03-10 05:14:08] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-10 05:14:09] c-9-34.aglt2.org
[2026-03-10 05:14:09] apptainer works
[2026-03-10 05:14:09] Set ATHENA_PROC_NUMBER=8
[2026-03-10 05:14:09] Set ATHENA_CORE_NUMBER=8
[2026-03-10 05:14:09] Starting ATLAS job with PandaID=7035830916
[2026-03-10 05:14:09] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-10 08:13:47]  *** The last 200 lines of the pilot log: ***
[2026-03-10 08:13:47] 2026-03-10 12:13:14,006 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-10 08:13:47] 2026-03-10 12:13:14,007 | INFO     | log transfer has been attempted: DONE
[2026-03-10 08:13:47] 2026-03-10 12:13:14,007 | INFO     | job 7035830916 has finished - writing final server update
[2026-03-10 08:13:47] 2026-03-10 12:13:14,007 | INFO     | total number of processed events: 400 (read)
[2026-03-10 08:13:47] 2026-03-10 12:13:14,013 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-7035830916/memory_monitor_summary.json (trf name=prmon)
[2026-03-10 08:13:47] 2026-03-10 12:13:14,014 | INFO     | extracted standard info from prmon json
[2026-03-10 08:13:47] 2026-03-10 12:13:14,014 | INFO     | extracted standard memory fields from prmon json
[2026-03-10 08:13:47] 2026-03-10 12:13:14,014 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-10 08:13:47] 2026-03-10 12:13:14,014 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-10 08:13:47] 2026-03-10 12:13:14,014 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-10 08:13:47] 2026-03-10 12:13:14,019 | INFO     | fitting pss+swap vs Time
[2026-03-10 08:13:47] 2026-03-10 12:13:14,019 | INFO     | sum of square deviations: 1690450300.0
[2026-03-10 08:13:47] 2026-03-10 12:13:14,021 | INFO     | sum of deviations: 27831101678.499996
[2026-03-10 08:13:47] 2026-03-10 12:13:14,021 | INFO     | mean x: 1773139414.5
[2026-03-10 08:13:47] 2026-03-10 12:13:14,021 | INFO     | mean y: 2502649.4943181816
[2026-03-10 08:13:47] 2026-03-10 12:13:14,021 | INFO     | intersect: -29189969519.078426
[2026-03-10 08:13:47] 2026-03-10 12:13:14,021 | INFO     | chi2: 1.2396412047678949
[2026-03-10 08:13:47] 2026-03-10 12:13:14,022 | INFO     | sum of square deviations: 1550429070.0
[2026-03-10 08:13:47] 2026-03-10 12:13:14,023 | INFO     | sum of deviations: 26903327028.0
[2026-03-10 08:13:47] 2026-03-10 12:13:14,023 | INFO     | mean x: 1773139262.0
[2026-03-10 08:13:47] 2026-03-10 12:13:14,023 | INFO     | mean y: 2501638.6842105263
[2026-03-10 08:13:47] 2026-03-10 12:13:14,024 | INFO     | intersect: -30765333120.614113
[2026-03-10 08:13:47] 2026-03-10 12:13:14,024 | INFO     | chi2: 1.240107293672886
[2026-03-10 08:13:47] 2026-03-10 12:13:14,024 | INFO     | current chi2=1.240107293672886 (change=-0.0375986941381553 %)
[2026-03-10 08:13:47] 2026-03-10 12:13:14,024 | INFO     | right removable region: 170
[2026-03-10 08:13:47] 2026-03-10 12:13:14,025 | INFO     | sum of square deviations: 1550429070.0
[2026-03-10 08:13:47] 2026-03-10 12:13:14,026 | INFO     | sum of deviations: 3307396576.0
[2026-03-10 08:13:47] 2026-03-10 12:13:14,026 | INFO     | mean x: 1773139567.0
[2026-03-10 08:13:47] 2026-03-10 12:13:14,026 | INFO     | mean y: 2529049.49122807
[2026-03-10 08:13:47] 2026-03-10 12:13:14,026 | INFO     | intersect: -3779956616.0193667
[2026-03-10 08:13:47] 2026-03-10 12:13:14,027 | INFO     | chi2: 0.028035994330340454
[2026-03-10 08:13:47] 2026-03-10 12:13:14,027 | INFO     | current chi2=0.028035994330340454 (change=97.73837831281271 %)
[2026-03-10 08:13:47] 2026-03-10 12:13:14,027 | INFO     | sum of square deviations: 1418361477.5
[2026-03-10 08:13:47] 2026-03-10 12:13:14,028 | INFO     | sum of deviations: -34935828.49999984
[2026-03-10 08:13:47] 2026-03-10 12:13:14,028 | INFO     | mean x: 1773139719.5
[2026-03-10 08:13:47] 2026-03-10 12:13:14,029 | INFO     | mean y: 2532863.307228916
[2026-03-10 08:13:47] 2026-03-10 12:13:14,029 | INFO     | intersect: 46207276.44496857
[2026-03-10 08:13:47] 2026-03-10 12:13:14,029 | INFO     | chi2: 0.004735108082571558
[2026-03-10 08:13:47] 2026-03-10 12:13:14,029 | INFO     | current chi2=0.004735108082571558 (change=83.1106112136453 %)
[2026-03-10 08:13:47] 2026-03-10 12:13:14,030 | INFO     | sum of square deviations: 1294014960.0
[2026-03-10 08:13:47] 2026-03-10 12:13:14,031 | INFO     | sum of deviations: -810429346.9999999
[2026-03-10 08:13:47] 2026-03-10 12:13:14,031 | INFO     | mean x: 1773139872.0
[2026-03-10 08:13:47] 2026-03-10 12:13:14,031 | INFO     | mean y: 2533809.285714286
[2026-03-10 08:13:47] 2026-03-10 12:13:14,031 | INFO     | intersect: 1113034563.1600153
[2026-03-10 08:13:47] 2026-03-10 12:13:14,032 | INFO     | chi2: 0.0038123626290146326
[2026-03-10 08:13:47] 2026-03-10 12:13:14,032 | INFO     | current chi2=0.0038123626290146326 (change=19.487315547310548 %)
[2026-03-10 08:13:47] 2026-03-10 12:13:14,032 | INFO     | left removable region: 30
[2026-03-10 08:13:47] 2026-03-10 12:13:14,032 | INFO     | sum of square deviations: 850825255.0
[2026-03-10 08:13:47] 2026-03-10 12:13:14,033 | INFO     | sum of deviations: -196672875.50000006
[2026-03-10 08:13:47] 2026-03-10 12:13:14,033 | INFO     | mean x: 1773140146.5
[2026-03-10 08:13:47] 2026-03-10 12:13:14,034 | INFO     | mean y: 2532561.2357142856
[2026-03-10 08:13:47] 2026-03-10 12:13:14,034 | INFO     | intersect: 412403529.7187153
[2026-03-10 08:13:47] 2026-03-10 12:13:14,034 | INFO     | chi2: 0.0034636581953355473
[2026-03-10 08:13:47] 2026-03-10 12:13:14,034 | INFO     | current memory leak: -0.23 B/s (using 140 data points, chi2=0.00)
[2026-03-10 08:13:47] 2026-03-10 12:13:14,035 | INFO     | could have reported an average CPU frequency of 2999 MHz (9 samples)
[2026-03-10 08:13:47] 2026-03-10 12:13:14,035 | INFO     | ..............................
[2026-03-10 08:13:47] 2026-03-10 12:13:14,035 | INFO     | . Timing measurements:
[2026-03-10 08:13:47] 2026-03-10 12:13:14,035 | INFO     | . get job = 0 s
[2026-03-10 08:13:47] 2026-03-10 12:13:14,035 | INFO     | . initial setup = 0 s
[2026-03-10 08:13:47] 2026-03-10 12:13:14,036 | INFO     | . payload setup = 4 s
[2026-03-10 08:13:47] 2026-03-10 12:13:14,036 | INFO     | . stage-in = 0 s
[2026-03-10 08:13:47] 2026-03-10 12:13:14,036 | INFO     | . payload execution = 10709 s
[2026-03-10 08:13:47] 2026-03-10 12:13:14,036 | INFO     | . stage-out = 2 s
[2026-03-10 08:13:47] 2026-03-10 12:13:14,036 | INFO     | . log creation = 0 s
[2026-03-10 08:13:47] 2026-03-10 12:13:14,036 | INFO     | ..............................
[2026-03-10 08:13:47] 2026-03-10 12:13:14,180 | INFO     | 
[2026-03-10 08:13:47] 2026-03-10 12:13:14,181 | INFO     | job summary report
[2026-03-10 08:13:47] 2026-03-10 12:13:14,181 | INFO     | --------------------------------------------------
[2026-03-10 08:13:47] 2026-03-10 12:13:14,181 | INFO     | PanDA job id: 7035830916
[2026-03-10 08:13:47] 2026-03-10 12:13:14,181 | INFO     | task id: 48838610
[2026-03-10 08:13:47] 2026-03-10 12:13:14,181 | INFO     | errors: (none)
[2026-03-10 08:13:47] 2026-03-10 12:13:14,181 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-10 08:13:47] 2026-03-10 12:13:14,181 | INFO     | pilot state: finished 
[2026-03-10 08:13:47] 2026-03-10 12:13:14,182 | INFO     | transexitcode: 0
[2026-03-10 08:13:47] 2026-03-10 12:13:14,182 | INFO     | exeerrorcode: 0
[2026-03-10 08:13:47] 2026-03-10 12:13:14,182 | INFO     | exeerrordiag: 
[2026-03-10 08:13:47] 2026-03-10 12:13:14,182 | INFO     | exitcode: 0
[2026-03-10 08:13:47] 2026-03-10 12:13:14,182 | INFO     | exitmsg: OK
[2026-03-10 08:13:47] 2026-03-10 12:13:14,182 | INFO     | cpuconsumptiontime: 80955 s
[2026-03-10 08:13:47] 2026-03-10 12:13:14,182 | INFO     | nevents: 400
[2026-03-10 08:13:47] 2026-03-10 12:13:14,183 | INFO     | neventsw: 0
[2026-03-10 08:13:47] 2026-03-10 12:13:14,183 | INFO     | pid: 15002
[2026-03-10 08:13:47] 2026-03-10 12:13:14,183 | INFO     | pgrp: 15002
[2026-03-10 08:13:47] 2026-03-10 12:13:14,183 | INFO     | corecount: 8
[2026-03-10 08:13:47] 2026-03-10 12:13:14,183 | INFO     | event service: False
[2026-03-10 08:13:47] 2026-03-10 12:13:14,183 | INFO     | sizes: {0: 2280200, 11: 2280200, 10718: 2309016, 10720: 2318014, 10722: 2318098, 10725: 2318356}
[2026-03-10 08:13:47] 2026-03-10 12:13:14,184 | INFO     | --------------------------------------------------
[2026-03-10 08:13:47] 2026-03-10 12:13:14,184 | INFO     | 
[2026-03-10 08:13:47] 2026-03-10 12:13:14,184 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2026-03-10 08:13:47] 2026-03-10 12:13:14,203 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-10 08:13:47] 2026-03-10 12:13:14,203 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-10 08:13:47] 2026-03-10 12:13:14,203 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-10 08:13:47] 2026-03-10 12:13:14,203 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-10 08:13:47] 2026-03-10 12:13:14,204 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-10 08:13:47] 2026-03-10 12:13:14,204 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-10 08:13:47] 2026-03-10 12:13:14,204 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-10 08:13:47] 2026-03-10 12:13:14,204 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-10 08:13:47] 2026-03-10 12:13:14,204 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-10 08:13:47] 2026-03-10 12:13:14,204 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-10 08:13:47] 2026-03-10 12:13:14,204 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-10 08:13:47] 2026-03-10 12:13:14,204 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-10 08:13:47] 2026-03-10 12:13:14,204 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-10 08:13:47] 2026-03-10 12:13:14,204 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-10 08:13:47] 2026-03-10 12:13:14,204 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-10 08:13:47] 2026-03-10 12:13:14,205 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-10 08:13:47] 2026-03-10 12:13:14,205 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-10 08:13:47] 2026-03-10 12:13:14,205 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-10 08:13:47] 2026-03-10 12:13:14,205 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-10 08:13:47] 2026-03-10 12:13:14,205 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-10 08:13:47] 2026-03-10 12:13:14,205 | INFO     | job 7035830916 has completed (purged errors)
[2026-03-10 08:13:47] 2026-03-10 12:13:14,205 | INFO     | overall cleanup function is called
[2026-03-10 08:13:47] 2026-03-10 12:13:15,213 | INFO     | --- collectZombieJob: --- 10, [15002]
[2026-03-10 08:13:47] 2026-03-10 12:13:15,213 | INFO     | zombie collector waiting for pid 15002
[2026-03-10 08:13:47] 2026-03-10 12:13:15,213 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-10 08:13:47] 2026-03-10 12:13:15,214 | INFO     | collected zombie processes
[2026-03-10 08:13:47] 2026-03-10 12:13:15,214 | INFO     | will attempt to kill all subprocesses of pid=15002
[2026-03-10 08:13:47] 2026-03-10 12:13:15,459 | INFO     | process IDs to be killed: [15002] (in reverse order)
[2026-03-10 08:13:47] 2026-03-10 12:13:15,537 | WARNING  | found no corresponding commands to process id(s)
[2026-03-10 08:13:47] 2026-03-10 12:13:15,537 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-10 08:13:47] 2026-03-10 12:13:15,545 | INFO     | did not find any defunct processes belonging to 15002
[2026-03-10 08:13:47] 2026-03-10 12:13:15,553 | INFO     | did not find any defunct processes belonging to 15002
[2026-03-10 08:13:47] 2026-03-10 12:13:15,553 | INFO     | ready for new job
[2026-03-10 08:13:47] 2026-03-10 12:13:15,554 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-10 08:13:47] 2026-03-10 12:13:15,556 | INFO     | **************************************
[2026-03-10 08:13:47] 2026-03-10 12:13:15,556 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-10 08:13:47] 2026-03-10 12:13:15,556 | INFO     | **************************************
[2026-03-10 08:13:47] 2026-03-10 12:13:15,556 | INFO     | 
[2026-03-10 08:13:47] 2026-03-10 12:13:15,558 | INFO     | architecture information:
[2026-03-10 08:13:47] 2026-03-10 12:13:15,558 | INFO     | executing command: cat /etc/os-release
[2026-03-10 08:13:47] 2026-03-10 12:13:15,574 | INFO     | cat /etc/os-release:
[2026-03-10 08:13:47] NAME="CentOS Linux"
[2026-03-10 08:13:47] VERSION="7 (Core)"
[2026-03-10 08:13:47] ID="centos"
[2026-03-10 08:13:47] ID_LIKE="rhel fedora"
[2026-03-10 08:13:47] VERSION_ID="7"
[2026-03-10 08:13:47] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-10 08:13:47] ANSI_COLOR="0;31"
[2026-03-10 08:13:47] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-10 08:13:47] HOME_URL="https://www.centos.org/"
[2026-03-10 08:13:47] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-10 08:13:47] 
[2026-03-10 08:13:47] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-10 08:13:47] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-10 08:13:47] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-10 08:13:47] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-10 08:13:47] 
[2026-03-10 08:13:47] 2026-03-10 12:13:15,575 | INFO     | **************************************
[2026-03-10 08:13:47] 2026-03-10 12:13:16,078 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2026-03-10 08:13:47] 2026-03-10 12:13:16,095 | INFO     | sufficient remaining disk space (103704166400 B)
[2026-03-10 08:13:47] 2026-03-10 12:13:16,095 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-10 08:13:47] 2026-03-10 12:13:16,095 | INFO     | current server update state: UPDATING_FINAL
[2026-03-10 08:13:47] 2026-03-10 12:13:16,095 | INFO     | update_server=False
[2026-03-10 08:13:47] 2026-03-10 12:13:16,096 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-10 08:13:47] 2026-03-10 12:13:16,096 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-10 08:13:47] 2026-03-10 12:13:16,096 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-10 08:13:47] 2026-03-10 12:13:16,096 | INFO     | aborting loop
[2026-03-10 08:13:47] 2026-03-10 12:13:17,008 | INFO     | all data control threads have been joined
[2026-03-10 08:13:47] 2026-03-10 12:13:17,101 | INFO     | [job] retrieve thread has finished
[2026-03-10 08:13:47] 2026-03-10 12:13:17,102 | INFO     | [job] queue monitor thread has finished
[2026-03-10 08:13:47] 2026-03-10 12:13:17,103 | INFO     | [job] job monitor thread has finished
[2026-03-10 08:13:47] 2026-03-10 12:13:17,265 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-10 08:13:47] 2026-03-10 12:13:17,419 | INFO     | all payload control threads have been joined
[2026-03-10 08:13:47] 2026-03-10 12:13:17,428 | INFO     | [payload] validate_post thread has finished
[2026-03-10 08:13:47] 2026-03-10 12:13:17,494 | INFO     | [data] copytool_in thread has finished
[2026-03-10 08:13:47] 2026-03-10 12:13:17,572 | INFO     | [payload] failed_post thread has finished
[2026-03-10 08:13:47] 2026-03-10 12:13:17,594 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-10 08:13:47] 2026-03-10 12:13:17,691 | INFO     | [payload] validate_pre thread has finished
[2026-03-10 08:13:47] 2026-03-10 12:13:17,700 | INFO     | all job control threads have been joined
[2026-03-10 08:13:47] 2026-03-10 12:13:17,703 | INFO     | [job] create_data_payload thread has finished
[2026-03-10 08:13:47] 2026-03-10 12:13:18,013 | INFO     | [data] control thread has finished
[2026-03-10 08:13:47] 2026-03-10 12:13:18,199 | INFO     | [payload] execute_payloads thread has finished
[2026-03-10 08:13:47] 2026-03-10 12:13:18,222 | INFO     | [job] validate thread has finished
[2026-03-10 08:13:47] 2026-03-10 12:13:18,424 | INFO     | [payload] control thread has finished
[2026-03-10 08:13:47] 2026-03-10 12:13:18,468 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-10 08:13:47] 2026-03-10 12:13:18,705 | INFO     | [job] control thread has finished
[2026-03-10 08:13:47] 2026-03-10 12:13:19,269 | INFO     | [data] copytool_out thread has finished
[2026-03-10 08:13:47] 2026-03-10 12:13:21,600 | INFO     | [data] queue_monitor thread has finished
[2026-03-10 08:13:47] 2026-03-10 12:13:35,248 | INFO     | [monitor] cgroup control has ended
[2026-03-10 08:13:47] 2026-03-10 12:13:36,379 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140538576922432)>', '<ExcThread(monitor, started 140538124670720)>']
[2026-03-10 08:13:47] 2026-03-10 12:13:41,405 | INFO     | all workflow threads have been joined
[2026-03-10 08:13:47] 2026-03-10 12:13:41,406 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-10 08:13:47] 2026-03-10 12:13:41,406 | INFO     | traces error code: 0
[2026-03-10 08:13:47] 2026-03-10 12:13:41,406 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-10 08:13:47] 2026-03-10 12:13:46,924 | INFO     | PID=5438 has CPU usage=7.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-03-10 08:13:47] 2026-03-10 12:13:46,925 | INFO     | .. there are 4 such processes running
[2026-03-10 08:13:47] 2026-03-10 12:13:46,926 | INFO     | found 0 job(s) in 20 queues
[2026-03-10 08:13:47] 2026-03-10 12:13:46,926 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-10 08:13:47] 2026-03-10 12:13:46,926 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-10 08:13:47] 2026-03-10 12:13:46,926 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-10 08:13:47] 2026-03-10 12:13:46,926 | INFO     | [monitor] control thread has ended
[2026-03-10 08:13:47] 2026-03-10 12:13:47,050 [wrapper] ==== pilot stdout END ====
[2026-03-10 08:13:47] 2026-03-10 12:13:47,052 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-10 08:13:47] 2026-03-10 12:13:47,055 [wrapper] pilotpid: 5438
[2026-03-10 08:13:47] 2026-03-10 12:13:47,057 [wrapper] Pilot exit status: 0
[2026-03-10 08:13:47] 2026-03-10 12:13:47,066 [wrapper] pandaids: 7035830916 7035830916
[2026-03-10 08:13:47] 2026-03-10 12:13:47,106 [wrapper] cleanup supervisor_pilot 31789 5442
[2026-03-10 08:13:47] 2026-03-10 12:13:47,108 [wrapper] Test setup, not cleaning
[2026-03-10 08:13:47] 2026-03-10 12:13:47,111 [wrapper] apfmon messages muted
[2026-03-10 08:13:47] 2026-03-10 12:13:47,114 [wrapper] ==== wrapper stdout END ====
[2026-03-10 08:13:47] 2026-03-10 12:13:47,116 [wrapper] ==== wrapper stderr END ====
[2026-03-10 08:13:47]  *** Error codes and diagnostics ***
[2026-03-10 08:13:47]     "exeErrorCode": 0,
[2026-03-10 08:13:47]     "exeErrorDiag": "",
[2026-03-10 08:13:47]     "pilotErrorCode": 0,
[2026-03-10 08:13:47]     "pilotErrorDiag": "",
[2026-03-10 08:13:47]  *** Listing of results directory ***
[2026-03-10 08:13:47] total 737852
[2026-03-10 08:13:47] drwx------ 5 boincer umatlas      4096 Feb  2 10:00 pilot3
[2026-03-10 08:13:47] -rw-r--r-- 1 boincer umatlas      5111 Mar  1 23:46 queuedata.json
[2026-03-10 08:13:47] -rw-r--r-- 1 boincer umatlas    584627 Mar  1 23:46 pilot3.tar.gz
[2026-03-10 08:13:47] -rwx------ 1 boincer umatlas     36322 Mar  1 23:47 runpilot2-wrapper.sh
[2026-03-10 08:13:47] -rw-r--r-- 1 boincer umatlas       100 Mar 10 04:19 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-10 08:13:47] -rwxr-xr-x 1 boincer umatlas      7986 Mar 10 04:19 run_atlas
[2026-03-10 08:13:47] -rw-r--r-- 1 boincer umatlas       105 Mar 10 04:19 job.xml
[2026-03-10 08:13:47] -rw-r--r-- 3 boincer umatlas 271656585 Mar 10 04:19 EVNT.48343779._000096.pool.root.1
[2026-03-10 08:13:47] -rw-r--r-- 3 boincer umatlas 271656585 Mar 10 04:19 ATLAS.root_0
[2026-03-10 08:13:47] -rw-r--r-- 2 boincer umatlas     15845 Mar 10 04:19 start_atlas.sh
[2026-03-10 08:13:47] drwxrwx--x 2 boincer umatlas      4096 Mar 10 04:19 shared
[2026-03-10 08:13:47] -rw-r--r-- 2 boincer umatlas    597969 Mar 10 04:19 input.tar.gz
[2026-03-10 08:13:47] -rw-r--r-- 1 boincer umatlas         0 Mar 10 04:19 boinc_lockfile
[2026-03-10 08:13:47] -rw-r--r-- 1 boincer umatlas      2578 Mar 10 05:14 pandaJob.out
[2026-03-10 08:13:47] -rw------- 1 boincer umatlas        57 Mar 10 05:14 setup.sh.local
[2026-03-10 08:13:47] -rw------- 1 boincer umatlas   1005073 Mar 10 05:14 agis_schedconf.cvmfs.json
[2026-03-10 08:13:47] -rw------- 1 boincer umatlas       438 Mar 10 05:14 workernode_map.json
[2026-03-10 08:13:47] -rw-r--r-- 1 boincer umatlas      6037 Mar 10 08:11 init_data.xml
[2026-03-10 08:13:47] -rw------- 1 boincer umatlas 204470502 Mar 10 08:12 HITS.48838610._002460.pool.root.1
[2026-03-10 08:13:47] -rw------- 1 boincer umatlas      1048 Mar 10 08:13 memory_monitor_summary.json
[2026-03-10 08:13:47] -rw-r--r-- 1 boincer umatlas       531 Mar 10 08:13 boinc_task_state.xml
[2026-03-10 08:13:47] -rw------- 1 boincer umatlas   1511578 Mar 10 08:13 agis_ddmendpoints.agis.ALL.json
[2026-03-10 08:13:47] -rw------- 1 boincer umatlas    426912 Mar 10 08:13 log.48838610._002460.job.log.tgz.1
[2026-03-10 08:13:47] -rw------- 1 boincer umatlas      6396 Mar 10 08:13 heartbeat.json
[2026-03-10 08:13:47] -rw-r--r-- 1 boincer umatlas      8192 Mar 10 08:13 boinc_mmap_file
[2026-03-10 08:13:47] -rw-r--r-- 1 boincer umatlas        28 Mar 10 08:13 wrapper_checkpoint.txt
[2026-03-10 08:13:47] -rw------- 1 boincer umatlas        96 Mar 10 08:13 pilot_heartbeat.json
[2026-03-10 08:13:47] -rw------- 1 boincer umatlas       819 Mar 10 08:13 pilotlog.txt
[2026-03-10 08:13:47] -rw------- 1 boincer umatlas   1494443 Mar 10 08:13 log.48838610._002460.job.log.1
[2026-03-10 08:13:47] -rw------- 1 boincer umatlas       357 Mar 10 08:13 output.list
[2026-03-10 08:13:47] -rw-r--r-- 1 boincer umatlas       620 Mar 10 08:13 runtime_log
[2026-03-10 08:13:47] -rw------- 1 boincer umatlas   1935360 Mar 10 08:13 result.tar.gz
[2026-03-10 08:13:47] -rw-r--r-- 1 boincer umatlas      9417 Mar 10 08:13 runtime_log.err
[2026-03-10 08:13:47] -rw------- 1 boincer umatlas       783 Mar 10 08:13 6kgMDmaMAH9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDm1WCLDm10Qk1n.diag
[2026-03-10 08:13:47] -rw-r--r-- 1 boincer umatlas     23191 Mar 10 08:13 stderr.txt
[2026-03-10 08:13:47] HITS file was successfully produced:
[2026-03-10 08:13:47] -rw------- 1 boincer umatlas 204470502 Mar 10 08:12 shared/HITS.pool.root.1
[2026-03-10 08:13:47]  *** Contents of shared directory: ***
[2026-03-10 08:13:47] total 467468
[2026-03-10 08:13:47] -rw-r--r-- 3 boincer umatlas 271656585 Mar 10 04:19 ATLAS.root_0
[2026-03-10 08:13:47] -rw-r--r-- 2 boincer umatlas     15845 Mar 10 04:19 start_atlas.sh
[2026-03-10 08:13:47] -rw-r--r-- 2 boincer umatlas    597969 Mar 10 04:19 input.tar.gz
[2026-03-10 08:13:47] -rw------- 1 boincer umatlas 204470502 Mar 10 08:12 HITS.pool.root.1
[2026-03-10 08:13:47] -rw------- 1 boincer umatlas   1935360 Mar 10 08:13 result.tar.gz
08:13:49 (39345): run_atlas exited; CPU time 81210.055070
08:13:49 (39345): called boinc_finish(0)

</stderr_txt>
]]>

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