Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
16:58:41 (526463): wrapper (7.7.26015): starting
16:58:41 (526463): wrapper: running run_atlas (--nthreads 4)
[2026-03-11 16:58:41] Arguments: --nthreads 4
[2026-03-11 16:58:41] Threads: 4
[2026-03-11 16:58:41] Checking for CVMFS
[2026-03-11 16:58:41] No cvmfs_config command found, will try listing directly
[2026-03-11 16:58:41] CVMFS is ok
[2026-03-11 16:58:41] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-11 16:58:41] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-11 16:58:41] Further information can be found at the LHC@home message board.
[2026-03-11 16:58:41] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-11 16:58:41] Checking for apptainer binary...
[2026-03-11 16:58:41] which: no apptainer in ((null))
[2026-03-11 16:58:41] apptainer is not installed, using version from CVMFS
[2026-03-11 16:58:41] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-11 16:58:41] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot40/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut06.grid.cesnet.cz
[2026-03-11 16:58:41] apptainer works
[2026-03-11 16:58:41] Set ATHENA_PROC_NUMBER=4
[2026-03-11 16:58:41] Set ATHENA_CORE_NUMBER=4
[2026-03-11 16:58:41] Starting ATLAS job with PandaID=7041087582
[2026-03-11 16:58:41] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot40/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
17:38:27 (621591): wrapper (7.7.26015): starting
17:38:27 (621591): wrapper: running run_atlas (--nthreads 4)
[2026-03-11 17:38:27] Arguments: --nthreads 4
[2026-03-11 17:38:27] Threads: 4
[2026-03-11 17:38:27] This job has been restarted, cleaning up previous attempt
[2026-03-11 17:38:27] Checking for CVMFS
[2026-03-11 17:38:27] No cvmfs_config command found, will try listing directly
[2026-03-11 17:38:27] CVMFS is ok
[2026-03-11 17:38:27] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-11 17:38:27] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-11 17:38:27] Further information can be found at the LHC@home message board.
[2026-03-11 17:38:27] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-11 17:38:27] Checking for apptainer binary...
[2026-03-11 17:38:27] which: no apptainer in ((null))
[2026-03-11 17:38:27] apptainer is not installed, using version from CVMFS
[2026-03-11 17:38:27] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-11 17:38:27] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot40/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut06.grid.cesnet.cz
[2026-03-11 17:38:27] apptainer works
[2026-03-11 17:38:27] Set ATHENA_PROC_NUMBER=4
[2026-03-11 17:38:27] Set ATHENA_CORE_NUMBER=4
[2026-03-11 17:38:27] Starting ATLAS job with PandaID=7041087582
[2026-03-11 17:38:27] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot40/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-11 20:46:54]  *** The last 200 lines of the pilot log: ***
[2026-03-11 20:46:54] 2026-03-11 19:42:45,981 | INFO     | preparing for final server update for job 7041087582 in state='finished'
[2026-03-11 20:46:54] 2026-03-11 19:42:45,981 | INFO     | reading metadata from: /var/lib/boinc/var/slot40/slots/0/PanDA_Pilot-7041087582/jobReport.json
[2026-03-11 20:46:54] 2026-03-11 19:42:45,984 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot40/slots/0/workernode_map.json
[2026-03-11 20:46:54] 2026-03-11 19:42:45,984 | INFO     | this job has now completed (state=finished)
[2026-03-11 20:46:54] 2026-03-11 19:42:45,984 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-11 20:46:54] 2026-03-11 19:42:45,984 | INFO     | log transfer has been attempted: DONE
[2026-03-11 20:46:54] 2026-03-11 19:42:45,985 | INFO     | job 7041087582 has finished - writing final server update
[2026-03-11 20:46:54] 2026-03-11 19:42:45,985 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_571287/.job.ad'
[2026-03-11 20:46:54] 2026-03-11 19:42:45,985 | INFO     | total number of processed events: 400 (read)
[2026-03-11 20:46:54] 2026-03-11 19:42:45,998 | INFO     | using path: /var/lib/boinc/var/slot40/slots/0/PanDA_Pilot-7041087582/memory_monitor_summary.json (trf name=prmon)
[2026-03-11 20:46:54] 2026-03-11 19:42:45,998 | INFO     | extracted standard info from prmon json
[2026-03-11 20:46:54] 2026-03-11 19:42:45,999 | INFO     | extracted standard memory fields from prmon json
[2026-03-11 20:46:54] 2026-03-11 19:42:45,999 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-11 20:46:54] 2026-03-11 19:42:45,999 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-11 20:46:54] 2026-03-11 19:42:45,999 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-11 20:46:54] 2026-03-11 19:42:46,003 | INFO     | fitting pss+swap vs Time
[2026-03-11 20:46:54] 2026-03-11 19:42:46,003 | INFO     | sum of square deviations: 1838657730.0
[2026-03-11 20:46:54] 2026-03-11 19:42:46,004 | INFO     | sum of deviations: 17873452071.000004
[2026-03-11 20:46:54] 2026-03-11 19:42:46,004 | INFO     | mean x: 1773252624.0
[2026-03-11 20:46:54] 2026-03-11 19:42:46,004 | INFO     | mean y: 2310195.723756906
[2026-03-11 20:46:54] 2026-03-11 19:42:46,005 | INFO     | intersect: -17235343810.08133
[2026-03-11 20:46:54] 2026-03-11 19:42:46,005 | INFO     | chi2: 1.1244679704819893
[2026-03-11 20:46:54] 2026-03-11 19:42:46,005 | INFO     | sum of square deviations: 1690450300.0
[2026-03-11 20:46:54] 2026-03-11 19:42:46,006 | INFO     | sum of deviations: 17254397871.500004
[2026-03-11 20:46:54] 2026-03-11 19:42:46,006 | INFO     | mean x: 1773252471.5
[2026-03-11 20:46:54] 2026-03-11 19:42:46,006 | INFO     | mean y: 2309558.903409091
[2026-03-11 20:46:54] 2026-03-11 19:42:46,007 | INFO     | intersect: -18097248688.90886
[2026-03-11 20:46:54] 2026-03-11 19:42:46,007 | INFO     | chi2: 1.125166202444543
[2026-03-11 20:46:54] 2026-03-11 19:42:46,007 | INFO     | current chi2=1.125166202444543 (change=-0.062094428732764044 %)
[2026-03-11 20:46:54] 2026-03-11 19:42:46,007 | INFO     | right removable region: 175
[2026-03-11 20:46:54] 2026-03-11 19:42:46,007 | INFO     | sum of square deviations: 1690450300.0
[2026-03-11 20:46:54] 2026-03-11 19:42:46,008 | INFO     | sum of deviations: -1681830085.0000005
[2026-03-11 20:46:54] 2026-03-11 19:42:46,008 | INFO     | mean x: 1773252776.5
[2026-03-11 20:46:54] 2026-03-11 19:42:46,008 | INFO     | mean y: 2330021.9204545454
[2026-03-11 20:46:54] 2026-03-11 19:42:46,009 | INFO     | intersect: 1766540343.7663448
[2026-03-11 20:46:54] 2026-03-11 19:42:46,009 | INFO     | chi2: 0.004340366111186592
[2026-03-11 20:46:54] 2026-03-11 19:42:46,009 | INFO     | current chi2=0.004340366111186592 (change=99.61400713714184 %)
[2026-03-11 20:46:54] 2026-03-11 19:42:46,009 | INFO     | sum of square deviations: 1550429070.0
[2026-03-11 20:46:54] 2026-03-11 19:42:46,010 | INFO     | sum of deviations: -2224528846.0000005
[2026-03-11 20:46:54] 2026-03-11 19:42:46,010 | INFO     | mean x: 1773252929.0
[2026-03-11 20:46:54] 2026-03-11 19:42:46,011 | INFO     | mean y: 2330609.9590643276
[2026-03-11 20:46:54] 2026-03-11 19:42:46,011 | INFO     | intersect: 2546563279.573864
[2026-03-11 20:46:54] 2026-03-11 19:42:46,011 | INFO     | chi2: 0.003629928937205802
[2026-03-11 20:46:54] 2026-03-11 19:42:46,011 | INFO     | current chi2=0.003629928937205802 (change=16.36813936386042 %)
[2026-03-11 20:46:54] 2026-03-11 19:42:46,011 | INFO     | left removable region: 20
[2026-03-11 20:46:54] 2026-03-11 19:42:46,011 | INFO     | sum of square deviations: 1154663510.0
[2026-03-11 20:46:54] 2026-03-11 19:42:46,012 | INFO     | sum of deviations: -1821600666.0
[2026-03-11 20:46:54] 2026-03-11 19:42:46,012 | INFO     | mean x: 1773253051.0
[2026-03-11 20:46:54] 2026-03-11 19:42:46,012 | INFO     | mean y: 2329935.9032258065
[2026-03-11 20:46:54] 2026-03-11 19:42:46,013 | INFO     | intersect: 2799819343.607928
[2026-03-11 20:46:54] 2026-03-11 19:42:46,013 | INFO     | chi2: 0.0032561143278439005
[2026-03-11 20:46:54] 2026-03-11 19:42:46,013 | INFO     | current memory leak: -1.58 B/s (using 155 data points, chi2=0.00)
[2026-03-11 20:46:54] 2026-03-11 19:42:46,014 | INFO     | could have reported an average CPU frequency of 2556 MHz (10 samples)
[2026-03-11 20:46:54] 2026-03-11 19:42:46,014 | INFO     | ..............................
[2026-03-11 20:46:54] 2026-03-11 19:42:46,014 | INFO     | . Timing measurements:
[2026-03-11 20:46:54] 2026-03-11 19:42:46,014 | INFO     | . get job = 0 s
[2026-03-11 20:46:54] 2026-03-11 19:42:46,014 | INFO     | . initial setup = 1 s
[2026-03-11 20:46:54] 2026-03-11 19:42:46,014 | INFO     | . payload setup = 4 s
[2026-03-11 20:46:54] 2026-03-11 19:42:46,014 | INFO     | . stage-in = 0 s
[2026-03-11 20:46:54] 2026-03-11 19:42:46,014 | INFO     | . payload execution = 11026 s
[2026-03-11 20:46:54] 2026-03-11 19:42:46,014 | INFO     | . stage-out = 1 s
[2026-03-11 20:46:54] 2026-03-11 19:42:46,014 | INFO     | . log creation = 0 s
[2026-03-11 20:46:54] 2026-03-11 19:42:46,014 | INFO     | ..............................
[2026-03-11 20:46:54] 2026-03-11 19:42:46,271 | INFO     | 
[2026-03-11 20:46:54] 2026-03-11 19:42:46,271 | INFO     | job summary report
[2026-03-11 20:46:54] 2026-03-11 19:42:46,271 | INFO     | --------------------------------------------------
[2026-03-11 20:46:54] 2026-03-11 19:42:46,271 | INFO     | PanDA job id: 7041087582
[2026-03-11 20:46:54] 2026-03-11 19:42:46,271 | INFO     | task id: 48955015
[2026-03-11 20:46:54] 2026-03-11 19:42:46,271 | INFO     | errors: (none)
[2026-03-11 20:46:54] 2026-03-11 19:42:46,271 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-11 20:46:54] 2026-03-11 19:42:46,271 | INFO     | pilot state: finished 
[2026-03-11 20:46:54] 2026-03-11 19:42:46,272 | INFO     | transexitcode: 0
[2026-03-11 20:46:54] 2026-03-11 19:42:46,272 | INFO     | exeerrorcode: 0
[2026-03-11 20:46:54] 2026-03-11 19:42:46,272 | INFO     | exeerrordiag: 
[2026-03-11 20:46:54] 2026-03-11 19:42:46,272 | INFO     | exitcode: 0
[2026-03-11 20:46:54] 2026-03-11 19:42:46,272 | INFO     | exitmsg: OK
[2026-03-11 20:46:54] 2026-03-11 19:42:46,272 | INFO     | cpuconsumptiontime: 41816 s
[2026-03-11 20:46:54] 2026-03-11 19:42:46,272 | INFO     | nevents: 400
[2026-03-11 20:46:54] 2026-03-11 19:42:46,272 | INFO     | neventsw: 0
[2026-03-11 20:46:54] 2026-03-11 19:42:46,272 | INFO     | pid: 685695
[2026-03-11 20:46:54] 2026-03-11 19:42:46,272 | INFO     | pgrp: 685695
[2026-03-11 20:46:54] 2026-03-11 19:42:46,272 | INFO     | corecount: 4
[2026-03-11 20:46:54] 2026-03-11 19:42:46,272 | INFO     | event service: False
[2026-03-11 20:46:54] 2026-03-11 19:42:46,272 | INFO     | sizes: {0: 2279987, 1: 2280249, 11: 2280277, 11035: 2309679, 11036: 2318699, 11038: 2318755, 11040: 2319077}
[2026-03-11 20:46:54] 2026-03-11 19:42:46,272 | INFO     | --------------------------------------------------
[2026-03-11 20:46:54] 2026-03-11 19:42:46,273 | INFO     | 
[2026-03-11 20:46:54] 2026-03-11 19:42:46,273 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot40/slots/0
[2026-03-11 20:46:54] 2026-03-11 19:42:46,295 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-11 20:46:54] 2026-03-11 19:42:46,295 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-11 20:46:54] 2026-03-11 19:42:46,295 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-11 20:46:54] 2026-03-11 19:42:46,295 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-11 20:46:54] 2026-03-11 19:42:46,296 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-11 20:46:54] 2026-03-11 19:42:46,296 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-11 20:46:54] 2026-03-11 19:42:46,296 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-11 20:46:54] 2026-03-11 19:42:46,296 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-11 20:46:54] 2026-03-11 19:42:46,296 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-11 20:46:54] 2026-03-11 19:42:46,296 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-11 20:46:54] 2026-03-11 19:42:46,296 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-11 20:46:54] 2026-03-11 19:42:46,296 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-11 20:46:54] 2026-03-11 19:42:46,296 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-11 20:46:54] 2026-03-11 19:42:46,296 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-11 20:46:54] 2026-03-11 19:42:46,296 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-11 20:46:54] 2026-03-11 19:42:46,297 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-11 20:46:54] 2026-03-11 19:42:46,297 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-11 20:46:54] 2026-03-11 19:42:46,297 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-11 20:46:54] 2026-03-11 19:42:46,297 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-11 20:46:54] 2026-03-11 19:42:46,297 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-11 20:46:54] 2026-03-11 19:42:46,297 | INFO     | job 7041087582 has completed (purged errors)
[2026-03-11 20:46:54] 2026-03-11 19:42:46,297 | INFO     | overall cleanup function is called
[2026-03-11 20:46:54] 2026-03-11 19:42:47,305 | INFO     | --- collectZombieJob: --- 10, [685695]
[2026-03-11 20:46:54] 2026-03-11 19:42:47,306 | INFO     | zombie collector waiting for pid 685695
[2026-03-11 20:46:54] 2026-03-11 19:42:47,306 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-11 20:46:54] 2026-03-11 19:42:47,306 | INFO     | collected zombie processes
[2026-03-11 20:46:54] 2026-03-11 19:42:47,306 | INFO     | will attempt to kill all subprocesses of pid=685695
[2026-03-11 20:46:54] 2026-03-11 19:42:47,686 | INFO     | process IDs to be killed: [685695] (in reverse order)
[2026-03-11 20:46:54] 2026-03-11 19:42:47,799 | WARNING  | found no corresponding commands to process id(s)
[2026-03-11 20:46:54] 2026-03-11 19:42:47,800 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-11 20:46:54] 2026-03-11 19:42:47,813 | INFO     | did not find any defunct processes belonging to 685695
[2026-03-11 20:46:54] 2026-03-11 19:42:47,825 | INFO     | did not find any defunct processes belonging to 685695
[2026-03-11 20:46:54] 2026-03-11 19:42:47,825 | INFO     | ready for new job
[2026-03-11 20:46:54] 2026-03-11 19:42:47,825 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-11 20:46:54] 2026-03-11 19:42:47,827 | INFO     | **************************************
[2026-03-11 20:46:54] 2026-03-11 19:42:47,828 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-11 20:46:54] 2026-03-11 19:42:47,828 | INFO     | **************************************
[2026-03-11 20:46:54] 2026-03-11 19:42:47,828 | INFO     | 
[2026-03-11 20:46:54] 2026-03-11 19:42:47,832 | INFO     | architecture information:
[2026-03-11 20:46:54] 2026-03-11 19:42:47,832 | INFO     | executing command: cat /etc/os-release
[2026-03-11 20:46:54] 2026-03-11 19:42:47,848 | INFO     | cat /etc/os-release:
[2026-03-11 20:46:54] NAME="CentOS Linux"
[2026-03-11 20:46:54] VERSION="7 (Core)"
[2026-03-11 20:46:54] ID="centos"
[2026-03-11 20:46:54] ID_LIKE="rhel fedora"
[2026-03-11 20:46:54] VERSION_ID="7"
[2026-03-11 20:46:54] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-11 20:46:54] ANSI_COLOR="0;31"
[2026-03-11 20:46:54] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-11 20:46:54] HOME_URL="https://www.centos.org/"
[2026-03-11 20:46:54] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-11 20:46:54] 
[2026-03-11 20:46:54] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-11 20:46:54] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-11 20:46:54] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-11 20:46:54] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-11 20:46:54] 
[2026-03-11 20:46:54] 2026-03-11 19:42:47,848 | INFO     | **************************************
[2026-03-11 20:46:54] 2026-03-11 19:42:48,351 | INFO     | executing command: df -mP /var/lib/boinc/var/slot40/slots/0
[2026-03-11 20:46:54] 2026-03-11 19:42:48,367 | INFO     | sufficient remaining disk space (25296896000 B)
[2026-03-11 20:46:54] 2026-03-11 19:42:48,368 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-11 20:46:54] 2026-03-11 19:42:48,368 | INFO     | current server update state: UPDATING_FINAL
[2026-03-11 20:46:54] 2026-03-11 19:42:48,368 | INFO     | update_server=False
[2026-03-11 20:46:54] 2026-03-11 19:42:48,368 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-11 20:46:54] 2026-03-11 19:42:48,368 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-11 20:46:54] 2026-03-11 19:42:48,719 | INFO     | all job control threads have been joined
[2026-03-11 20:46:54] 2026-03-11 19:42:48,959 | INFO     | all payload control threads have been joined
[2026-03-11 20:46:54] 2026-03-11 19:42:49,045 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-11 20:46:54] 2026-03-11 19:42:49,045 | INFO     | aborting loop
[2026-03-11 20:46:54] 2026-03-11 19:42:49,308 | INFO     | all data control threads have been joined
[2026-03-11 20:46:54] 2026-03-11 19:42:49,374 | INFO     | [job] retrieve thread has finished
[2026-03-11 20:46:54] 2026-03-11 19:42:49,725 | INFO     | [job] control thread has finished
[2026-03-11 20:46:54] 2026-03-11 19:42:49,778 | INFO     | [job] create_data_payload thread has finished
[2026-03-11 20:46:54] 2026-03-11 19:42:49,783 | INFO     | [payload] validate_post thread has finished
[2026-03-11 20:46:54] 2026-03-11 19:42:49,860 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-11 20:46:54] 2026-03-11 19:42:49,965 | INFO     | [payload] control thread has finished
[2026-03-11 20:46:54] 2026-03-11 19:42:50,050 | INFO     | [job] job monitor thread has finished
[2026-03-11 20:46:54] 2026-03-11 19:42:50,090 | INFO     | [job] validate thread has finished
[2026-03-11 20:46:54] 2026-03-11 19:42:50,314 | INFO     | [data] control thread has finished
[2026-03-11 20:46:54] 2026-03-11 19:42:50,374 | INFO     | [data] copytool_out thread has finished
[2026-03-11 20:46:54] 2026-03-11 19:42:50,497 | INFO     | [payload] validate_pre thread has finished
[2026-03-11 20:46:54] 2026-03-11 19:42:50,669 | INFO     | [payload] execute_payloads thread has finished
[2026-03-11 20:46:54] 2026-03-11 19:42:50,778 | INFO     | [data] copytool_in thread has finished
[2026-03-11 20:46:54] 2026-03-11 19:42:50,789 | INFO     | [payload] failed_post thread has finished
[2026-03-11 20:46:54] 2026-03-11 19:42:51,121 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-11 20:46:54] 2026-03-11 19:42:52,126 | INFO     | [job] queue monitor thread has finished
[2026-03-11 20:46:54] 2026-03-11 19:42:53,113 | INFO     | [monitor] cgroup control has ended
[2026-03-11 20:46:54] 2026-03-11 19:42:53,866 | INFO     | [data] queue_monitor thread has finished
[2026-03-11 20:46:54] 2026-03-11 19:42:58,466 | INFO     | job.realtimelogging is not enabled
[2026-03-11 20:46:54] 2026-03-11 19:42:59,472 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-11 20:46:54] 2026-03-11 19:43:00,999 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22587865024320)>', '<ExcThread(monitor, started 22587564349184)>']
[2026-03-11 20:46:54] 2026-03-11 19:43:06,022 | INFO     | all workflow threads have been joined
[2026-03-11 20:46:54] 2026-03-11 19:43:06,022 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-11 20:46:54] 2026-03-11 19:43:06,022 | INFO     | traces error code: 0
[2026-03-11 20:46:54] 2026-03-11 19:43:06,022 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-11 20:46:54] 2026-03-11 19:43:16,914 | INFO     | 11052s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2026-03-11 20:46:54] 2026-03-11 19:43:18,346 | INFO     | PID=639336 has CPU usage=5.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-11 20:46:54] 2026-03-11 19:43:18,346 | INFO     | .. there are 7 such processes running
[2026-03-11 20:46:54] 2026-03-11 19:43:18,347 | INFO     | found 0 job(s) in 20 queues
[2026-03-11 20:46:54] 2026-03-11 19:43:18,347 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-11 20:46:54] 2026-03-11 19:43:18,347 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-11 20:46:54] 2026-03-11 19:43:18,347 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-11 20:46:54] 2026-03-11 19:43:18,347 | INFO     | [monitor] control thread has ended
[2026-03-11 20:46:54] 2026-03-11 19:43:18,498 [wrapper] ==== pilot stdout END ====
[2026-03-11 20:46:54] 2026-03-11 19:43:18,501 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-11 20:46:54] 2026-03-11 19:43:18,504 [wrapper] pilotpid: 639336
[2026-03-11 20:46:54] 2026-03-11 19:43:18,507 [wrapper] Pilot exit status: 0
[2026-03-11 20:46:54] 2026-03-11 19:43:18,516 [wrapper] pandaids: 7041087582 7041087582
[2026-03-11 20:46:54] 2026-03-11 19:43:18,592 [wrapper] cleanup supervisor_pilot  800948 639337
[2026-03-11 20:46:54] 2026-03-11 19:43:18,595 [wrapper] Test setup, not cleaning
[2026-03-11 20:46:54] 2026-03-11 19:43:18,598 [wrapper] apfmon messages muted
[2026-03-11 20:46:54] 2026-03-11 19:43:18,601 [wrapper] ==== wrapper stdout END ====
[2026-03-11 20:46:54] 2026-03-11 19:43:18,603 [wrapper] ==== wrapper stderr END ====
[2026-03-11 20:46:54]  *** Error codes and diagnostics ***
[2026-03-11 20:46:54]     "exeErrorCode": 0,
[2026-03-11 20:46:54]     "exeErrorDiag": "",
[2026-03-11 20:46:54]     "pilotErrorCode": 0,
[2026-03-11 20:46:54]     "pilotErrorDiag": "",
[2026-03-11 20:46:54]  *** Listing of results directory ***
[2026-03-11 20:46:54] total 1054512
[2026-03-11 20:46:54] drwx------. 5 boinc boinc      4096 Feb  2 16:00 pilot3
[2026-03-11 20:46:54] -rw-r--r--. 1 boinc boinc    584627 Mar  9 20:08 pilot3.tar.gz
[2026-03-11 20:46:54] -rwx------. 1 boinc boinc     36322 Mar  9 20:08 runpilot2-wrapper.sh
[2026-03-11 20:46:54] -rw-r--r--. 1 boinc boinc      5111 Mar  9 20:08 queuedata.json
[2026-03-11 20:46:54] -rw-r--r--. 1 boinc boinc       100 Mar 11 16:58 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-11 20:46:54] -rwxr-xr-x. 1 boinc boinc      7986 Mar 11 16:58 run_atlas
[2026-03-11 20:46:54] -rw-r--r--. 1 boinc boinc       105 Mar 11 16:58 job.xml
[2026-03-11 20:46:54] -rw-r--r--. 3 boinc boinc 443248110 Mar 11 16:58 EVNT.46701403._002248.pool.root.1
[2026-03-11 20:46:54] -rw-r--r--. 3 boinc boinc 443248110 Mar 11 16:58 ATLAS.root_0
[2026-03-11 20:46:54] -rw-r--r--. 2 boinc boinc     15845 Mar 11 16:58 start_atlas.sh
[2026-03-11 20:46:54] drwxrwx--x. 2 boinc boinc      4096 Mar 11 16:58 shared
[2026-03-11 20:46:54] -rw-r--r--. 2 boinc boinc    597946 Mar 11 16:58 input.tar.gz
[2026-03-11 20:46:54] -rw-r--r--. 1 boinc boinc         0 Mar 11 16:58 boinc_lockfile
[2026-03-11 20:46:54] -rw-r--r--. 1 boinc boinc      2572 Mar 11 17:38 pandaJob.out
[2026-03-11 20:46:54] -rw-------. 1 boinc boinc   1006251 Mar 11 17:38 agis_schedconf.cvmfs.json
[2026-03-11 20:46:54] -rw-------. 1 boinc boinc       452 Mar 11 17:38 workernode_map.json
[2026-03-11 20:46:54] -rw-r--r--. 1 boinc boinc      6569 Mar 11 17:48 init_data.xml
[2026-03-11 20:46:54] -rw-------. 1 boinc boinc 185493923 Mar 11 20:42 HITS.48955015._009800.pool.root.1
[2026-03-11 20:46:54] -rw-r--r--. 1 boinc boinc       530 Mar 11 20:42 boinc_task_state.xml
[2026-03-11 20:46:54] -rw-------. 1 boinc boinc      1044 Mar 11 20:42 memory_monitor_summary.json
[2026-03-11 20:46:54] -rw-------. 1 boinc boinc   1511578 Mar 11 20:42 agis_ddmendpoints.agis.ALL.json
[2026-03-11 20:46:54] -rw-------. 1 boinc boinc    388439 Mar 11 20:42 log.48955015._009800.job.log.tgz.1
[2026-03-11 20:46:54] -rw-------. 1 boinc boinc      6405 Mar 11 20:42 heartbeat.json
[2026-03-11 20:46:54] -rw-------. 1 boinc boinc       937 Mar 11 20:43 pilotlog.txt
[2026-03-11 20:46:54] -rw-------. 1 boinc boinc        96 Mar 11 20:43 pilot_heartbeat.json
[2026-03-11 20:46:54] -rw-------. 1 boinc boinc   1557506 Mar 11 20:43 log.48955015._009800.job.log.1
[2026-03-11 20:46:54] -rw-------. 1 boinc boinc       357 Mar 11 20:43 output.list
[2026-03-11 20:46:54] -rw-r--r--. 1 boinc boinc       620 Mar 11 20:43 runtime_log
[2026-03-11 20:46:54] -rw-------. 1 boinc boinc   1966080 Mar 11 20:43 result.tar.gz
[2026-03-11 20:46:54] -rw-r--r--. 1 boinc boinc      9282 Mar 11 20:43 runtime_log.err
[2026-03-11 20:46:54] -rw-------. 1 boinc boinc       789 Mar 11 20:43 rQTLDmu8uJ9n9Rq4apOajLDm4fhM0noT9bVooX4SDmZqaLDmEJqoxm.diag
[2026-03-11 20:46:54] -rw-r--r--. 1 boinc boinc        27 Mar 11 20:46 wrapper_checkpoint.txt
[2026-03-11 20:46:54] -rw-r--r--. 1 boinc boinc      8192 Mar 11 20:46 boinc_mmap_file
[2026-03-11 20:46:54] -rw-r--r--. 1 boinc boinc     23066 Mar 11 20:46 stderr.txt
[2026-03-11 20:46:54] HITS file was successfully produced:
[2026-03-11 20:46:54] -rw-------. 1 boinc boinc 185493923 Mar 11 20:42 shared/HITS.pool.root.1
[2026-03-11 20:46:54]  *** Contents of shared directory: ***
[2026-03-11 20:46:54] total 616536
[2026-03-11 20:46:54] -rw-r--r--. 3 boinc boinc 443248110 Mar 11 16:58 ATLAS.root_0
[2026-03-11 20:46:54] -rw-r--r--. 2 boinc boinc     15845 Mar 11 16:58 start_atlas.sh
[2026-03-11 20:46:54] -rw-r--r--. 2 boinc boinc    597946 Mar 11 16:58 input.tar.gz
[2026-03-11 20:46:54] -rw-------. 1 boinc boinc 185493923 Mar 11 20:42 HITS.pool.root.1
[2026-03-11 20:46:54] -rw-------. 1 boinc boinc   1966080 Mar 11 20:43 result.tar.gz
20:46:56 (621591): run_atlas exited; CPU time 42256.985279
20:46:56 (621591): called boinc_finish(0)

</stderr_txt>
]]>

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