Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
16:59:42 (954821): wrapper (7.7.26015): starting
16:59:42 (954821): wrapper: running run_atlas (--nthreads 3)
[2026-03-10 16:59:42] Arguments: --nthreads 3
[2026-03-10 16:59:42] Threads: 3
[2026-03-10 16:59:42] Checking for CVMFS
[2026-03-10 16:59:42] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-10 16:59:43] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-10 16:59:43] Running cvmfs_config stat atlas.cern.ch
[2026-03-10 16:59:43] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-10 16:59:43] 2.9.2.0 4801 6167 84040 157119 2 50 26837779 36864001 0 130560 0 2673383 99.985 225008 6303 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-10 16:59:43] CVMFS is ok
[2026-03-10 16:59:43] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-10 16:59:43] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-10 16:59:43] Further information can be found at the LHC@home message board.
[2026-03-10 16:59:43] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-10 16:59:43] Checking for apptainer binary...
[2026-03-10 16:59:43] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-10 16:59:43] Running /usr/bin/apptainer --version
[2026-03-10 16:59:43] apptainer version 1.4.1-1.1
[2026-03-10 16:59:43] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-10 16:59:44] cosA125a
[2026-03-10 16:59:44] apptainer works
[2026-03-10 16:59:44] Set ATHENA_PROC_NUMBER=3
[2026-03-10 16:59:44] Set ATHENA_CORE_NUMBER=3
[2026-03-10 16:59:44] Starting ATLAS job with PandaID=7035730734
[2026-03-10 16:59:44] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-10 19:05:07]  *** The last 200 lines of the pilot log: ***
[2026-03-10 19:05:07] 2026-03-10 18:04:13,985 | INFO     | --- collectZombieJob: --- 10, [963311]
[2026-03-10 19:05:07] 2026-03-10 18:04:13,985 | INFO     | zombie collector waiting for pid 963311
[2026-03-10 19:05:07] 2026-03-10 18:04:13,985 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-10 19:05:07] 2026-03-10 18:04:13,985 | INFO     | collected zombie processes
[2026-03-10 19:05:07] 2026-03-10 18:04:13,985 | INFO     | will attempt to kill all subprocesses of pid=963311
[2026-03-10 19:05:07] 2026-03-10 18:04:14,031 | INFO     | process IDs to be killed: [963311] (in reverse order)
[2026-03-10 19:05:07] 2026-03-10 18:04:14,056 | WARNING  | found no corresponding commands to process id(s)
[2026-03-10 19:05:07] 2026-03-10 18:04:14,057 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-10 19:05:07] 2026-03-10 18:04:14,058 | INFO     | did not find any defunct processes belonging to 963311
[2026-03-10 19:05:07] 2026-03-10 18:04:14,059 | INFO     | did not find any defunct processes belonging to 963311
[2026-03-10 19:05:07] 2026-03-10 18:04:14,059 | INFO     | ready for new job
[2026-03-10 19:05:07] 2026-03-10 18:04:14,059 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-10 19:05:07] 2026-03-10 18:04:14,060 | INFO     | **************************************
[2026-03-10 19:05:07] 2026-03-10 18:04:14,060 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-10 19:05:07] 2026-03-10 18:04:14,060 | INFO     | **************************************
[2026-03-10 19:05:07] 2026-03-10 18:04:14,060 | INFO     | 
[2026-03-10 19:05:07] 2026-03-10 18:04:14,060 | INFO     | architecture information:
[2026-03-10 19:05:07] 2026-03-10 18:04:14,060 | INFO     | executing command: cat /etc/os-release
[2026-03-10 19:05:07] 2026-03-10 18:04:14,069 | INFO     | cat /etc/os-release:
[2026-03-10 19:05:07] NAME="CentOS Linux"
[2026-03-10 19:05:07] VERSION="7 (Core)"
[2026-03-10 19:05:07] ID="centos"
[2026-03-10 19:05:07] ID_LIKE="rhel fedora"
[2026-03-10 19:05:07] VERSION_ID="7"
[2026-03-10 19:05:07] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-10 19:05:07] ANSI_COLOR="0;31"
[2026-03-10 19:05:07] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-10 19:05:07] HOME_URL="https://www.centos.org/"
[2026-03-10 19:05:07] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-10 19:05:07] 
[2026-03-10 19:05:07] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-10 19:05:07] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-10 19:05:07] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-10 19:05:07] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-10 19:05:07] 
[2026-03-10 19:05:07] 2026-03-10 18:04:14,069 | INFO     | **************************************
[2026-03-10 19:05:07] 2026-03-10 18:04:14,573 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-10 19:05:07] 2026-03-10 18:04:14,586 | INFO     | sufficient remaining disk space (331678220288 B)
[2026-03-10 19:05:07] 2026-03-10 18:04:14,586 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-10 19:05:07] 2026-03-10 18:04:14,586 | INFO     | current server update state: UPDATING_FINAL
[2026-03-10 19:05:07] 2026-03-10 18:04:14,586 | INFO     | update_server=False
[2026-03-10 19:05:07] 2026-03-10 18:04:14,586 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-10 19:05:07] 2026-03-10 18:04:14,586 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-10 19:05:07] 2026-03-10 18:04:14,587 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-10 19:05:07] 2026-03-10 18:04:14,587 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-10 19:05:07] 2026-03-10 18:04:14,690 | INFO     | all job control threads have been joined
[2026-03-10 19:05:07] 2026-03-10 18:04:14,773 | INFO     | all payload control threads have been joined
[2026-03-10 19:05:07] 2026-03-10 18:04:14,878 | INFO     | all data control threads have been joined
[2026-03-10 19:05:07] 2026-03-10 18:04:15,027 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-10 19:05:07] 2026-03-10 18:04:15,027 | INFO     | aborting loop
[2026-03-10 19:05:07] 2026-03-10 18:04:15,592 | INFO     | [job] retrieve thread has finished
[2026-03-10 19:05:07] 2026-03-10 18:04:15,592 | INFO     | [job] queue monitor thread has finished
[2026-03-10 19:05:07] 2026-03-10 18:04:15,696 | INFO     | [job] control thread has finished
[2026-03-10 19:05:07] 2026-03-10 18:04:15,779 | INFO     | [payload] control thread has finished
[2026-03-10 19:05:07] 2026-03-10 18:04:15,779 | INFO     | [payload] execute_payloads thread has finished
[2026-03-10 19:05:07] 2026-03-10 18:04:15,883 | INFO     | [data] control thread has finished
[2026-03-10 19:05:07] 2026-03-10 18:04:16,032 | INFO     | [job] job monitor thread has finished
[2026-03-10 19:05:07] 2026-03-10 18:04:16,104 | INFO     | [payload] validate_post thread has finished
[2026-03-10 19:05:07] 2026-03-10 18:04:16,194 | INFO     | [payload] failed_post thread has finished
[2026-03-10 19:05:07] 2026-03-10 18:04:16,343 | INFO     | [job] create_data_payload thread has finished
[2026-03-10 19:05:07] 2026-03-10 18:04:16,352 | INFO     | [job] validate thread has finished
[2026-03-10 19:05:07] 2026-03-10 18:04:16,359 | INFO     | [payload] validate_pre thread has finished
[2026-03-10 19:05:07] 2026-03-10 18:04:16,500 | INFO     | [data] copytool_in thread has finished
[2026-03-10 19:05:07] 2026-03-10 18:04:16,590 | INFO     | [data] copytool_out thread has finished
[2026-03-10 19:05:07] 2026-03-10 18:04:18,593 | INFO     | [data] queue_monitor thread has finished
[2026-03-10 19:05:07] 2026-03-10 18:04:24,741 | INFO     | job.realtimelogging is not enabled
[2026-03-10 19:05:07] 2026-03-10 18:04:25,747 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-10 19:05:07] 2026-03-10 18:04:45,162 | INFO     | PID=958864 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-10 19:05:07] 2026-03-10 18:04:45,162 | INFO     | found 0 job(s) in 20 queues
[2026-03-10 19:05:07] 2026-03-10 18:04:45,162 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-10 19:05:07] 2026-03-10 18:04:45,162 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-10 19:05:07] 2026-03-10 18:05:01,443 | INFO     | [monitor] cgroup control has ended
[2026-03-10 19:05:07] 2026-03-10 18:05:02,756 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139952140199744)>', '<ExcThread(monitor, started 139951858792192)>']
[2026-03-10 19:05:07] 2026-03-10 18:05:03,242 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-10 19:05:07] 2026-03-10 18:05:03,242 | INFO     | [monitor] control thread has ended
[2026-03-10 19:05:07] 2026-03-10 18:05:07,760 | INFO     | all workflow threads have been joined
[2026-03-10 19:05:07] 2026-03-10 18:05:07,760 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-10 19:05:07] 2026-03-10 18:05:07,761 | INFO     | traces error code: 0
[2026-03-10 19:05:07] 2026-03-10 18:05:07,761 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-10 19:05:07] 2026-03-10 18:05:07,809 [wrapper] ==== pilot stdout END ====
[2026-03-10 19:05:07] 2026-03-10 18:05:07,812 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-10 19:05:07] 2026-03-10 18:05:07,814 [wrapper] pilotpid: 958864
[2026-03-10 19:05:07] 2026-03-10 18:05:07,816 [wrapper] Pilot exit status: 0
[2026-03-10 19:05:07] 2026-03-10 18:05:07,824 [wrapper] pandaids: 7035730734
[2026-03-10 19:05:07] 2026-03-10 18:05:07,841 [wrapper] cleanup supervisor_pilot  969295 958865
[2026-03-10 19:05:07] 2026-03-10 18:05:07,844 [wrapper] Test setup, not cleaning
[2026-03-10 19:05:07] 2026-03-10 18:05:07,846 [wrapper] apfmon messages muted
[2026-03-10 19:05:07] 2026-03-10 18:05:07,849 [wrapper] ==== wrapper stdout END ====
[2026-03-10 19:05:07] 2026-03-10 18:05:07,851 [wrapper] ==== wrapper stderr END ====
[2026-03-10 19:05:07]  *** Error codes and diagnostics ***
[2026-03-10 19:05:07]     "exeErrorCode": 0,
[2026-03-10 19:05:07]     "exeErrorDiag": "",
[2026-03-10 19:05:07]     "pilotErrorCode": 0,
[2026-03-10 19:05:07]     "pilotErrorDiag": "",
[2026-03-10 19:05:07]  *** Listing of results directory ***
[2026-03-10 19:05:07] total 434912
[2026-03-10 19:05:07] -rw-r--r-- 1 boinc boinc    584627 Mar  2 03:17 pilot3.tar.gz
[2026-03-10 19:05:07] -rwx------ 1 boinc boinc     36322 Mar  2 03:17 runpilot2-wrapper.sh
[2026-03-10 19:05:07] -rw-r--r-- 1 boinc boinc      5111 Mar  2 03:19 queuedata.json
[2026-03-10 19:05:07] -rw-r--r-- 1 boinc boinc       100 Mar 10 16:59 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-10 19:05:07] -rwxr-xr-x 1 boinc boinc      7986 Mar 10 16:59 run_atlas
[2026-03-10 19:05:07] -rw-r--r-- 1 boinc boinc       105 Mar 10 16:59 job.xml
[2026-03-10 19:05:07] -rw-r--r-- 2 boinc boinc 238278400 Mar 10 16:59 EVNT.48454148._000006.pool.root.1
[2026-03-10 19:05:07] -rw-r--r-- 2 boinc boinc    597988 Mar 10 16:59 input.tar.gz
[2026-03-10 19:05:07] -rw-r--r-- 2 boinc boinc     15845 Mar 10 16:59 start_atlas.sh
[2026-03-10 19:05:07] drwxrwx--x 2 boinc boinc      4096 Mar 10 16:59 shared
[2026-03-10 19:05:07] -rw-r--r-- 1 boinc boinc         0 Mar 10 16:59 boinc_setup_complete
[2026-03-10 19:05:07] -rw-r--r-- 1 boinc boinc      6441 Mar 10 16:59 init_data.xml
[2026-03-10 19:05:07] -rw-r--r-- 1 boinc boinc         0 Mar 10 16:59 boinc_lockfile
[2026-03-10 19:05:07] -rw-r--r-- 1 boinc boinc      2650 Mar 10 16:59 pandaJob.out
[2026-03-10 19:05:07] -rw------- 1 boinc boinc   1004455 Mar 10 16:59 agis_schedconf.cvmfs.json
[2026-03-10 19:05:07] -rw------- 1 boinc boinc   1511578 Mar 10 16:59 agis_ddmendpoints.agis.ALL.json
[2026-03-10 19:05:07] -rw------- 1 boinc boinc       429 Mar 10 16:59 workernode_map.json
[2026-03-10 19:05:07] drwx------ 5 boinc boinc      4096 Mar 10 16:59 pilot3
[2026-03-10 19:05:07] -rw------- 1 boinc boinc 200440151 Mar 10 19:03 HITS.48844766._000060.pool.root.1
[2026-03-10 19:05:07] -rw-r--r-- 1 boinc boinc       529 Mar 10 19:03 boinc_task_state.xml
[2026-03-10 19:05:07] -rw------- 1 boinc boinc      1020 Mar 10 19:04 memory_monitor_summary.json
[2026-03-10 19:05:07] -rw------- 1 boinc boinc    285702 Mar 10 19:04 log.48844766._000060.job.log.tgz.1
[2026-03-10 19:05:07] -rw------- 1 boinc boinc      6304 Mar 10 19:04 heartbeat.json
[2026-03-10 19:05:07] -rw------- 1 boinc boinc        95 Mar 10 19:04 pilot_heartbeat.json
[2026-03-10 19:05:07] -rw-r--r-- 1 boinc boinc      8192 Mar 10 19:05 boinc_mmap_file
[2026-03-10 19:05:07] -rw-r--r-- 1 boinc boinc        27 Mar 10 19:05 wrapper_checkpoint.txt
[2026-03-10 19:05:07] -rw------- 1 boinc boinc      4819 Mar 10 19:05 pilotlog.txt
[2026-03-10 19:05:07] -rw------- 1 boinc boinc   1073088 Mar 10 19:05 log.48844766._000060.job.log.1
[2026-03-10 19:05:07] -rw------- 1 boinc boinc       357 Mar 10 19:05 output.list
[2026-03-10 19:05:07] -rw-r--r-- 1 boinc boinc       620 Mar 10 19:05 runtime_log
[2026-03-10 19:05:07] -rw------- 1 boinc boinc   1372160 Mar 10 19:05 result.tar.gz
[2026-03-10 19:05:07] -rw-r--r-- 1 boinc boinc      8906 Mar 10 19:05 runtime_log.err
[2026-03-10 19:05:07] -rw------- 1 boinc boinc       659 Mar 10 19:05 dFuKDm917G9n9Rq4apOajLDm4fhM0noT9bVooX4SDmnLALDmw4NY3n.diag
[2026-03-10 19:05:07] -rw-r--r-- 1 boinc boinc     10693 Mar 10 19:05 stderr.txt
[2026-03-10 19:05:07] HITS file was successfully produced:
[2026-03-10 19:05:07] -rw------- 1 boinc boinc 200440151 Mar 10 19:03 shared/HITS.pool.root.1
[2026-03-10 19:05:07]  *** Contents of shared directory: ***
[2026-03-10 19:05:07] total 430384
[2026-03-10 19:05:07] -rw-r--r-- 2 boinc boinc 238278400 Mar 10 16:59 ATLAS.root_0
[2026-03-10 19:05:07] -rw-r--r-- 2 boinc boinc    597988 Mar 10 16:59 input.tar.gz
[2026-03-10 19:05:07] -rw-r--r-- 2 boinc boinc     15845 Mar 10 16:59 start_atlas.sh
[2026-03-10 19:05:07] -rw------- 1 boinc boinc 200440151 Mar 10 19:03 HITS.pool.root.1
[2026-03-10 19:05:07] -rw------- 1 boinc boinc   1372160 Mar 10 19:05 result.tar.gz
19:05:09 (954821): run_atlas exited; CPU time 21629.232085
19:05:09 (954821): called boinc_finish(0)

</stderr_txt>
]]>

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