Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
19:20:59 (192327): wrapper (7.7.26015): starting
19:20:59 (192327): wrapper: running run_atlas (--nthreads 2)
[2026-03-10 19:20:59] Arguments: --nthreads 2
[2026-03-10 19:20:59] Threads: 2
[2026-03-10 19:20:59] Checking for CVMFS
[2026-03-10 19:20:59] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-10 19:20:59] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-10 19:20:59] Running cvmfs_config stat atlas.cern.ch
[2026-03-10 19:20:59] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-10 19:20:59] 2.9.2.0 2856 1617 56472 157126 2 50 27433558 36864000 0 130560 0 560533 99.975 66675 16183 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-10 19:20:59] CVMFS is ok
[2026-03-10 19:20:59] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-10 19:20:59] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-10 19:20:59] Further information can be found at the LHC@home message board.
[2026-03-10 19:20:59] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-10 19:20:59] Checking for apptainer binary...
[2026-03-10 19:20:59] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-10 19:20:59] Running /usr/bin/apptainer --version
[2026-03-10 19:20:59] apptainer version 1.4.1-1.1
[2026-03-10 19:20:59] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-10 19:20:59] thA337
[2026-03-10 19:20:59] apptainer works
[2026-03-10 19:20:59] Set ATHENA_PROC_NUMBER=2
[2026-03-10 19:20:59] Set ATHENA_CORE_NUMBER=2
[2026-03-10 19:20:59] Starting ATLAS job with PandaID=7042039647
[2026-03-10 19:20:59] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-10 21:20:37]  *** The last 200 lines of the pilot log: ***
[2026-03-10 21:20:37] 2026-03-10 20:20:13,450 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-10 21:20:37] 2026-03-10 20:20:13,450 | INFO     | job 7042039647 has completed (purged errors)
[2026-03-10 21:20:37] 2026-03-10 20:20:13,450 | INFO     | overall cleanup function is called
[2026-03-10 21:20:37] 2026-03-10 20:20:14,456 | INFO     | --- collectZombieJob: --- 10, [200759]
[2026-03-10 21:20:37] 2026-03-10 20:20:14,456 | INFO     | zombie collector waiting for pid 200759
[2026-03-10 21:20:37] 2026-03-10 20:20:14,457 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-10 21:20:37] 2026-03-10 20:20:14,457 | INFO     | collected zombie processes
[2026-03-10 21:20:37] 2026-03-10 20:20:14,457 | INFO     | will attempt to kill all subprocesses of pid=200759
[2026-03-10 21:20:37] 2026-03-10 20:20:14,488 | INFO     | process IDs to be killed: [200759] (in reverse order)
[2026-03-10 21:20:37] 2026-03-10 20:20:14,509 | WARNING  | found no corresponding commands to process id(s)
[2026-03-10 21:20:37] 2026-03-10 20:20:14,509 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-10 21:20:37] 2026-03-10 20:20:14,510 | INFO     | did not find any defunct processes belonging to 200759
[2026-03-10 21:20:37] 2026-03-10 20:20:14,511 | INFO     | did not find any defunct processes belonging to 200759
[2026-03-10 21:20:37] 2026-03-10 20:20:14,511 | INFO     | ready for new job
[2026-03-10 21:20:37] 2026-03-10 20:20:14,511 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-10 21:20:37] 2026-03-10 20:20:14,511 | INFO     | **************************************
[2026-03-10 21:20:37] 2026-03-10 20:20:14,511 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-10 21:20:37] 2026-03-10 20:20:14,511 | INFO     | **************************************
[2026-03-10 21:20:37] 2026-03-10 20:20:14,511 | INFO     | 
[2026-03-10 21:20:37] 2026-03-10 20:20:14,512 | INFO     | architecture information:
[2026-03-10 21:20:37] 2026-03-10 20:20:14,512 | INFO     | executing command: cat /etc/os-release
[2026-03-10 21:20:37] 2026-03-10 20:20:14,521 | INFO     | cat /etc/os-release:
[2026-03-10 21:20:37] NAME="CentOS Linux"
[2026-03-10 21:20:37] VERSION="7 (Core)"
[2026-03-10 21:20:37] ID="centos"
[2026-03-10 21:20:37] ID_LIKE="rhel fedora"
[2026-03-10 21:20:37] VERSION_ID="7"
[2026-03-10 21:20:37] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-10 21:20:37] ANSI_COLOR="0;31"
[2026-03-10 21:20:37] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-10 21:20:37] HOME_URL="https://www.centos.org/"
[2026-03-10 21:20:37] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-10 21:20:37] 
[2026-03-10 21:20:37] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-10 21:20:37] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-10 21:20:37] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-10 21:20:37] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-10 21:20:37] 
[2026-03-10 21:20:37] 2026-03-10 20:20:14,521 | INFO     | **************************************
[2026-03-10 21:20:37] 2026-03-10 20:20:14,871 | WARNING  | process 200759 can no longer be monitored (due to stat problems) - aborting
[2026-03-10 21:20:37] 2026-03-10 20:20:14,893 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-03-10 21:20:37] 2026-03-10 20:20:14,919 | INFO     | number of running child processes to parent process 200759: 1
[2026-03-10 21:20:37] 2026-03-10 20:20:14,920 | INFO     | maximum number of monitored processes: 6
[2026-03-10 21:20:37] 2026-03-10 20:20:14,920 | INFO     | aborting job monitoring since job object (job id=7042039647) has expired
[2026-03-10 21:20:37] 2026-03-10 20:20:15,024 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-10 21:20:37] 2026-03-10 20:20:15,041 | INFO     | sufficient remaining disk space (482620735488 B)
[2026-03-10 21:20:37] 2026-03-10 20:20:15,042 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-10 21:20:37] 2026-03-10 20:20:15,042 | INFO     | current server update state: UPDATING_FINAL
[2026-03-10 21:20:37] 2026-03-10 20:20:15,042 | INFO     | update_server=False
[2026-03-10 21:20:37] 2026-03-10 20:20:15,042 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-10 21:20:37] 2026-03-10 20:20:15,043 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-03-10 21:20:37] 2026-03-10 20:20:15,043 | INFO     | found 0 job(s) in 20 queues
[2026-03-10 21:20:37] 2026-03-10 20:20:15,043 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-10 21:20:37] 2026-03-10 20:20:15,043 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-10 21:20:37] 2026-03-10 20:20:15,044 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-10 21:20:37] 2026-03-10 20:20:15,044 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-10 21:20:37] 2026-03-10 20:20:15,045 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-10 21:20:37] 2026-03-10 20:20:15,046 | INFO     | will abort loop
[2026-03-10 21:20:37] 2026-03-10 20:20:15,958 | INFO     | all data control threads have been joined
[2026-03-10 21:20:37] 2026-03-10 20:20:16,048 | INFO     | [job] retrieve thread has finished
[2026-03-10 21:20:37] 2026-03-10 20:20:16,051 | INFO     | [job] queue monitor thread has finished
[2026-03-10 21:20:37] 2026-03-10 20:20:16,051 | INFO     | [job] job monitor thread has finished
[2026-03-10 21:20:37] 2026-03-10 20:20:16,100 | INFO     | all payload control threads have been joined
[2026-03-10 21:20:37] 2026-03-10 20:20:16,133 | INFO     | [payload] failed_post thread has finished
[2026-03-10 21:20:37] 2026-03-10 20:20:16,655 | INFO     | all job control threads have been joined
[2026-03-10 21:20:37] 2026-03-10 20:20:16,769 | INFO     | [payload] execute_payloads thread has finished
[2026-03-10 21:20:37] 2026-03-10 20:20:16,783 | INFO     | [job] create_data_payload thread has finished
[2026-03-10 21:20:37] 2026-03-10 20:20:16,787 | INFO     | [job] validate thread has finished
[2026-03-10 21:20:37] 2026-03-10 20:20:16,913 | INFO     | [payload] validate_pre thread has finished
[2026-03-10 21:20:37] 2026-03-10 20:20:16,964 | INFO     | [data] control thread has finished
[2026-03-10 21:20:37] 2026-03-10 20:20:16,971 | INFO     | [data] copytool_in thread has finished
[2026-03-10 21:20:37] 2026-03-10 20:20:17,051 | INFO     | [data] copytool_out thread has finished
[2026-03-10 21:20:37] 2026-03-10 20:20:17,106 | INFO     | [payload] control thread has finished
[2026-03-10 21:20:37] 2026-03-10 20:20:17,293 | INFO     | [payload] validate_post thread has finished
[2026-03-10 21:20:37] 2026-03-10 20:20:17,661 | INFO     | [job] control thread has finished
[2026-03-10 21:20:37] 2026-03-10 20:20:17,778 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-10 21:20:37] 2026-03-10 20:20:21,786 | INFO     | [data] queue_monitor thread has finished
[2026-03-10 21:20:37] 2026-03-10 20:20:25,361 | INFO     | job.realtimelogging is not enabled
[2026-03-10 21:20:37] 2026-03-10 20:20:26,367 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-10 21:20:37] 2026-03-10 20:20:31,287 | INFO     | [monitor] cgroup control has ended
[2026-03-10 21:20:37] 2026-03-10 20:20:32,143 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140659889637184)>', '<ExcThread(monitor, started 140659163916032)>']
[2026-03-10 21:20:37] 2026-03-10 20:20:33,140 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-10 21:20:37] 2026-03-10 20:20:33,140 | INFO     | [monitor] control thread has ended
[2026-03-10 21:20:37] 2026-03-10 20:20:37,169 | INFO     | all workflow threads have been joined
[2026-03-10 21:20:37] 2026-03-10 20:20:37,170 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-10 21:20:37] 2026-03-10 20:20:37,171 | INFO     | traces error code: 0
[2026-03-10 21:20:37] 2026-03-10 20:20:37,171 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-10 21:20:37] 2026-03-10 20:20:37,212 [wrapper] ==== pilot stdout END ====
[2026-03-10 21:20:37] 2026-03-10 20:20:37,214 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-10 21:20:37] 2026-03-10 20:20:37,217 [wrapper] pilotpid: 196352
[2026-03-10 21:20:37] 2026-03-10 20:20:37,219 [wrapper] Pilot exit status: 0
[2026-03-10 21:20:37] 2026-03-10 20:20:37,225 [wrapper] pandaids: 7042039647
[2026-03-10 21:20:37] 2026-03-10 20:20:37,237 [wrapper] cleanup supervisor_pilot  205773 196353
[2026-03-10 21:20:37] 2026-03-10 20:20:37,239 [wrapper] Test setup, not cleaning
[2026-03-10 21:20:37] 2026-03-10 20:20:37,241 [wrapper] apfmon messages muted
[2026-03-10 21:20:37] 2026-03-10 20:20:37,243 [wrapper] ==== wrapper stdout END ====
[2026-03-10 21:20:37] 2026-03-10 20:20:37,245 [wrapper] ==== wrapper stderr END ====
[2026-03-10 21:20:37]  *** Error codes and diagnostics ***
[2026-03-10 21:20:37]     "exeErrorCode": 0,
[2026-03-10 21:20:37]     "exeErrorDiag": "",
[2026-03-10 21:20:37]     "pilotErrorCode": 0,
[2026-03-10 21:20:37]     "pilotErrorDiag": "",
[2026-03-10 21:20:37]  *** Listing of results directory ***
[2026-03-10 21:20:37] total 622264
[2026-03-10 21:20:37] -rw-r--r-- 1 boinc boinc    584627 Mar 10 05:09 pilot3.tar.gz
[2026-03-10 21:20:37] -rw-r--r-- 1 boinc boinc      5111 Mar 10 05:44 queuedata.json
[2026-03-10 21:20:37] -rwx------ 1 boinc boinc     36322 Mar 10 05:44 runpilot2-wrapper.sh
[2026-03-10 21:20:37] -rw-r--r-- 1 boinc boinc       100 Mar 10 19:20 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-10 21:20:37] -rwxr-xr-x 1 boinc boinc      7986 Mar 10 19:20 run_atlas
[2026-03-10 21:20:37] -rw-r--r-- 1 boinc boinc       105 Mar 10 19:20 job.xml
[2026-03-10 21:20:37] -rw-r--r-- 2 boinc boinc 441644767 Mar 10 19:20 EVNT.46701403._002309.pool.root.1
[2026-03-10 21:20:37] -rw-r--r-- 2 boinc boinc    597964 Mar 10 19:20 input.tar.gz
[2026-03-10 21:20:37] -rw-r--r-- 2 boinc boinc     15845 Mar 10 19:20 start_atlas.sh
[2026-03-10 21:20:37] drwxrwx--x 2 boinc boinc      4096 Mar 10 19:20 shared
[2026-03-10 21:20:37] -rw-r--r-- 1 boinc boinc         0 Mar 10 19:20 boinc_setup_complete
[2026-03-10 21:20:37] -rw-r--r-- 1 boinc boinc      6205 Mar 10 19:20 init_data.xml
[2026-03-10 21:20:37] -rw-r--r-- 1 boinc boinc         0 Mar 10 19:20 boinc_lockfile
[2026-03-10 21:20:37] -rw-r--r-- 1 boinc boinc      2571 Mar 10 19:20 pandaJob.out
[2026-03-10 21:20:37] -rw------- 1 boinc boinc   1006644 Mar 10 19:21 agis_schedconf.cvmfs.json
[2026-03-10 21:20:37] -rw------- 1 boinc boinc   1511578 Mar 10 19:21 agis_ddmendpoints.agis.ALL.json
[2026-03-10 21:20:37] -rw------- 1 boinc boinc       419 Mar 10 19:21 workernode_map.json
[2026-03-10 21:20:37] drwx------ 5 boinc boinc      4096 Mar 10 19:21 pilot3
[2026-03-10 21:20:37] -rw------- 1 boinc boinc        95 Mar 10 21:19 pilot_heartbeat.json
[2026-03-10 21:20:37] -rw------- 1 boinc boinc 189039572 Mar 10 21:19 HITS.48955015._012665.pool.root.1
[2026-03-10 21:20:37] -rw-r--r-- 1 boinc boinc       531 Mar 10 21:19 boinc_task_state.xml
[2026-03-10 21:20:37] -rw------- 1 boinc boinc      1013 Mar 10 21:20 memory_monitor_summary.json
[2026-03-10 21:20:37] -rw------- 1 boinc boinc    271736 Mar 10 21:20 log.48955015._012665.job.log.tgz.1
[2026-03-10 21:20:37] -rw------- 1 boinc boinc      6295 Mar 10 21:20 heartbeat.json
[2026-03-10 21:20:37] -rw-r--r-- 1 boinc boinc      8192 Mar 10 21:20 boinc_mmap_file
[2026-03-10 21:20:37] -rw-r--r-- 1 boinc boinc        27 Mar 10 21:20 wrapper_checkpoint.txt
[2026-03-10 21:20:37] -rw------- 1 boinc boinc      5146 Mar 10 21:20 pilotlog.txt
[2026-03-10 21:20:37] -rw------- 1 boinc boinc   1023249 Mar 10 21:20 log.48955015._012665.job.log.1
[2026-03-10 21:20:37] -rw------- 1 boinc boinc       357 Mar 10 21:20 output.list
[2026-03-10 21:20:37] -rw-r--r-- 1 boinc boinc       620 Mar 10 21:20 runtime_log
[2026-03-10 21:20:37] -rw------- 1 boinc boinc   1310720 Mar 10 21:20 result.tar.gz
[2026-03-10 21:20:37] -rw-r--r-- 1 boinc boinc      8896 Mar 10 21:20 runtime_log.err
[2026-03-10 21:20:37] -rw------- 1 boinc boinc       657 Mar 10 21:20 GDNNDmX83J9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmE7eLDmDNhcTm.diag
[2026-03-10 21:20:37] -rw-r--r-- 1 boinc boinc     11538 Mar 10 21:20 stderr.txt
[2026-03-10 21:20:37] HITS file was successfully produced:
[2026-03-10 21:20:37] -rw------- 1 boinc boinc 189039572 Mar 10 21:19 shared/HITS.pool.root.1
[2026-03-10 21:20:37]  *** Contents of shared directory: ***
[2026-03-10 21:20:37] total 617796
[2026-03-10 21:20:37] -rw-r--r-- 2 boinc boinc 441644767 Mar 10 19:20 ATLAS.root_0
[2026-03-10 21:20:37] -rw-r--r-- 2 boinc boinc    597964 Mar 10 19:20 input.tar.gz
[2026-03-10 21:20:37] -rw-r--r-- 2 boinc boinc     15845 Mar 10 19:20 start_atlas.sh
[2026-03-10 21:20:37] -rw------- 1 boinc boinc 189039572 Mar 10 21:19 HITS.pool.root.1
[2026-03-10 21:20:37] -rw------- 1 boinc boinc   1310720 Mar 10 21:20 result.tar.gz
21:20:38 (192327): run_atlas exited; CPU time 13802.807086
21:20:38 (192327): called boinc_finish(0)

</stderr_txt>
]]>

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