Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
15:35:57 (2464829): wrapper (7.7.26015): starting
15:35:57 (2464829): wrapper: running run_atlas (--nthreads 3)
[2026-03-10 15:35:57] Arguments: --nthreads 3
[2026-03-10 15:35:57] Threads: 3
[2026-03-10 15:35:57] Checking for CVMFS
[2026-03-10 15:35:57] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-10 15:35:58] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-10 15:35:58] Running cvmfs_config stat atlas.cern.ch
[2026-03-10 15:35:58] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-10 15:35:58] 2.9.2.0 2903 17142 86060 157117 0 50 29100131 36864001 0 130560 0 6913464 99.981 775416 6211 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-10 15:35:58] CVMFS is ok
[2026-03-10 15:35:58] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-10 15:35:58] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-10 15:35:58] Further information can be found at the LHC@home message board.
[2026-03-10 15:35:58] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-10 15:35:58] Checking for apptainer binary...
[2026-03-10 15:35:58] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-10 15:35:58] Running /usr/bin/apptainer --version
[2026-03-10 15:35:58] apptainer version 1.4.1-1.1
[2026-03-10 15:35:58] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-10 15:35:58] belleA253
[2026-03-10 15:35:58] apptainer works
[2026-03-10 15:35:58] Set ATHENA_PROC_NUMBER=3
[2026-03-10 15:35:58] Set ATHENA_CORE_NUMBER=3
[2026-03-10 15:35:58] Starting ATLAS job with PandaID=7035726592
[2026-03-10 15:35:58] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-10 16:41:18]  *** The last 200 lines of the pilot log: ***
[2026-03-10 16:41:18] 2026-03-10 15:40:35,920 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-10 16:41:18] 2026-03-10 15:40:35,920 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-10 16:41:18] 2026-03-10 15:40:35,920 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-10 16:41:18] 2026-03-10 15:40:35,920 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-10 16:41:18] 2026-03-10 15:40:35,920 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-10 16:41:18] 2026-03-10 15:40:35,920 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-10 16:41:18] 2026-03-10 15:40:35,920 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-10 16:41:18] 2026-03-10 15:40:35,920 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-10 16:41:18] 2026-03-10 15:40:35,920 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-10 16:41:18] 2026-03-10 15:40:35,920 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-10 16:41:18] 2026-03-10 15:40:35,920 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-10 16:41:18] 2026-03-10 15:40:35,920 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-10 16:41:18] 2026-03-10 15:40:35,920 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-10 16:41:18] 2026-03-10 15:40:35,920 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-10 16:41:18] 2026-03-10 15:40:35,920 | INFO     | job 7035726592 has completed (purged errors)
[2026-03-10 16:41:18] 2026-03-10 15:40:35,920 | INFO     | overall cleanup function is called
[2026-03-10 16:41:18] 2026-03-10 15:40:36,926 | INFO     | --- collectZombieJob: --- 10, [2473294]
[2026-03-10 16:41:18] 2026-03-10 15:40:36,926 | INFO     | zombie collector waiting for pid 2473294
[2026-03-10 16:41:18] 2026-03-10 15:40:36,926 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-10 16:41:18] 2026-03-10 15:40:36,927 | INFO     | collected zombie processes
[2026-03-10 16:41:18] 2026-03-10 15:40:36,927 | INFO     | will attempt to kill all subprocesses of pid=2473294
[2026-03-10 16:41:18] 2026-03-10 15:40:36,968 | INFO     | process IDs to be killed: [2473294] (in reverse order)
[2026-03-10 16:41:18] 2026-03-10 15:40:36,994 | WARNING  | found no corresponding commands to process id(s)
[2026-03-10 16:41:18] 2026-03-10 15:40:36,994 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-10 16:41:18] 2026-03-10 15:40:36,995 | INFO     | did not find any defunct processes belonging to 2473294
[2026-03-10 16:41:18] 2026-03-10 15:40:36,996 | INFO     | did not find any defunct processes belonging to 2473294
[2026-03-10 16:41:18] 2026-03-10 15:40:36,996 | INFO     | ready for new job
[2026-03-10 16:41:18] 2026-03-10 15:40:36,996 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-10 16:41:18] 2026-03-10 15:40:36,997 | INFO     | **************************************
[2026-03-10 16:41:18] 2026-03-10 15:40:36,997 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-10 16:41:18] 2026-03-10 15:40:36,997 | INFO     | **************************************
[2026-03-10 16:41:18] 2026-03-10 15:40:36,997 | INFO     | 
[2026-03-10 16:41:18] 2026-03-10 15:40:36,997 | INFO     | architecture information:
[2026-03-10 16:41:18] 2026-03-10 15:40:36,997 | INFO     | executing command: cat /etc/os-release
[2026-03-10 16:41:18] 2026-03-10 15:40:37,007 | INFO     | cat /etc/os-release:
[2026-03-10 16:41:18] NAME="CentOS Linux"
[2026-03-10 16:41:18] VERSION="7 (Core)"
[2026-03-10 16:41:18] ID="centos"
[2026-03-10 16:41:18] ID_LIKE="rhel fedora"
[2026-03-10 16:41:18] VERSION_ID="7"
[2026-03-10 16:41:18] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-10 16:41:18] ANSI_COLOR="0;31"
[2026-03-10 16:41:18] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-10 16:41:18] HOME_URL="https://www.centos.org/"
[2026-03-10 16:41:18] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-10 16:41:18] 
[2026-03-10 16:41:18] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-10 16:41:18] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-10 16:41:18] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-10 16:41:18] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-10 16:41:18] 
[2026-03-10 16:41:18] 2026-03-10 15:40:37,007 | INFO     | **************************************
[2026-03-10 16:41:18] 2026-03-10 15:40:37,510 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-10 16:41:18] 2026-03-10 15:40:37,524 | INFO     | sufficient remaining disk space (374572318720 B)
[2026-03-10 16:41:18] 2026-03-10 15:40:37,524 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-10 16:41:18] 2026-03-10 15:40:37,524 | INFO     | current server update state: UPDATING_FINAL
[2026-03-10 16:41:18] 2026-03-10 15:40:37,524 | INFO     | update_server=False
[2026-03-10 16:41:18] 2026-03-10 15:40:37,524 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-10 16:41:18] 2026-03-10 15:40:37,524 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-10 16:41:18] 2026-03-10 15:40:37,524 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-10 16:41:18] 2026-03-10 15:40:37,770 | INFO     | all job control threads have been joined
[2026-03-10 16:41:18] 2026-03-10 15:40:37,980 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-03-10 16:41:18] 2026-03-10 15:40:37,981 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-03-10 16:41:18] 2026-03-10 15:40:37,981 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-10 16:41:18] 2026-03-10 15:40:37,981 | INFO     | will abort loop
[2026-03-10 16:41:18] 2026-03-10 15:40:38,060 | INFO     | all payload control threads have been joined
[2026-03-10 16:41:18] 2026-03-10 15:40:38,166 | INFO     | all data control threads have been joined
[2026-03-10 16:41:18] 2026-03-10 15:40:38,530 | INFO     | [job] queue monitor thread has finished
[2026-03-10 16:41:18] 2026-03-10 15:40:38,530 | INFO     | [job] retrieve thread has finished
[2026-03-10 16:41:18] 2026-03-10 15:40:38,775 | INFO     | [job] control thread has finished
[2026-03-10 16:41:18] 2026-03-10 15:40:38,900 | INFO     | [payload] validate_post thread has finished
[2026-03-10 16:41:18] 2026-03-10 15:40:38,966 | INFO     | [job] validate thread has finished
[2026-03-10 16:41:18] 2026-03-10 15:40:38,986 | INFO     | [job] job monitor thread has finished
[2026-03-10 16:41:18] 2026-03-10 15:40:39,019 | INFO     | [job] create_data_payload thread has finished
[2026-03-10 16:41:18] 2026-03-10 15:40:39,066 | INFO     | [payload] control thread has finished
[2026-03-10 16:41:18] 2026-03-10 15:40:39,086 | INFO     | [payload] validate_pre thread has finished
[2026-03-10 16:41:18] 2026-03-10 15:40:39,092 | INFO     | [payload] failed_post thread has finished
[2026-03-10 16:41:18] 2026-03-10 15:40:39,171 | INFO     | [data] control thread has finished
[2026-03-10 16:41:18] 2026-03-10 15:40:39,222 | INFO     | [data] copytool_in thread has finished
[2026-03-10 16:41:18] 2026-03-10 15:40:39,269 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-10 16:41:18] 2026-03-10 15:40:39,530 | INFO     | [data] copytool_out thread has finished
[2026-03-10 16:41:18] 2026-03-10 15:40:39,878 | INFO     | [payload] execute_payloads thread has finished
[2026-03-10 16:41:18] 2026-03-10 15:40:40,228 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-10 16:41:18] 2026-03-10 15:40:44,235 | INFO     | [data] queue_monitor thread has finished
[2026-03-10 16:41:18] 2026-03-10 15:41:07,176 | INFO     | PID=2468865 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-10 16:41:18] 2026-03-10 15:41:07,177 | INFO     | found 0 job(s) in 20 queues
[2026-03-10 16:41:18] 2026-03-10 15:41:07,177 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-10 16:41:18] 2026-03-10 15:41:07,177 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-10 16:41:18] 2026-03-10 15:41:12,801 | INFO     | [monitor] cgroup control has ended
[2026-03-10 16:41:18] 2026-03-10 15:41:13,539 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140128999978816)>', '<ExcThread(monitor, started 140128064366336)>']
[2026-03-10 16:41:18] 2026-03-10 15:41:14,210 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-10 16:41:18] 2026-03-10 15:41:14,211 | INFO     | [monitor] control thread has ended
[2026-03-10 16:41:18] 2026-03-10 15:41:18,556 | INFO     | all workflow threads have been joined
[2026-03-10 16:41:18] 2026-03-10 15:41:18,556 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-10 16:41:18] 2026-03-10 15:41:18,557 | INFO     | traces error code: 0
[2026-03-10 16:41:18] 2026-03-10 15:41:18,557 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-10 16:41:18] 2026-03-10 15:41:18,607 [wrapper] ==== pilot stdout END ====
[2026-03-10 16:41:18] 2026-03-10 15:41:18,609 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-10 16:41:18] 2026-03-10 15:41:18,612 [wrapper] pilotpid: 2468865
[2026-03-10 16:41:18] 2026-03-10 15:41:18,615 [wrapper] Pilot exit status: 0
[2026-03-10 16:41:18] 2026-03-10 15:41:18,622 [wrapper] pandaids: 7035726592
[2026-03-10 16:41:18] 2026-03-10 15:41:18,639 [wrapper] cleanup supervisor_pilot 2478410 2468866
[2026-03-10 16:41:18] 2026-03-10 15:41:18,642 [wrapper] Test setup, not cleaning
[2026-03-10 16:41:18] 2026-03-10 15:41:18,645 [wrapper] apfmon messages muted
[2026-03-10 16:41:18] 2026-03-10 15:41:18,647 [wrapper] ==== wrapper stdout END ====
[2026-03-10 16:41:18] 2026-03-10 15:41:18,650 [wrapper] ==== wrapper stderr END ====
[2026-03-10 16:41:18]  *** Error codes and diagnostics ***
[2026-03-10 16:41:18]     "exeErrorCode": 0,
[2026-03-10 16:41:18]     "exeErrorDiag": "",
[2026-03-10 16:41:18]     "pilotErrorCode": 0,
[2026-03-10 16:41:18]     "pilotErrorDiag": "",
[2026-03-10 16:41:18]  *** Listing of results directory ***
[2026-03-10 16:41:18] total 338624
[2026-03-10 16:41:18] -rw-r--r-- 1 boinc boinc    584627 Mar  2 01:56 pilot3.tar.gz
[2026-03-10 16:41:18] -rwx------ 1 boinc boinc     36322 Mar  2 01:57 runpilot2-wrapper.sh
[2026-03-10 16:41:18] -rw-r--r-- 1 boinc boinc      5111 Mar  2 01:57 queuedata.json
[2026-03-10 16:41:18] -rw-r--r-- 1 boinc boinc       100 Mar 10 15:35 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-10 16:41:18] -rwxr-xr-x 1 boinc boinc      7986 Mar 10 15:35 run_atlas
[2026-03-10 16:41:18] -rw-r--r-- 1 boinc boinc       105 Mar 10 15:35 job.xml
[2026-03-10 16:41:18] -rw-r--r-- 2 boinc boinc 191541660 Mar 10 15:35 EVNT.48700856._000061.pool.root.1
[2026-03-10 16:41:18] drwxrwx--x 2 boinc boinc      4096 Mar 10 15:35 shared
[2026-03-10 16:41:18] -rw-r--r-- 2 boinc boinc    597926 Mar 10 15:35 input.tar.gz
[2026-03-10 16:41:18] -rw-r--r-- 2 boinc boinc     15845 Mar 10 15:35 start_atlas.sh
[2026-03-10 16:41:18] -rw-r--r-- 1 boinc boinc         0 Mar 10 15:35 boinc_setup_complete
[2026-03-10 16:41:18] -rw-r--r-- 1 boinc boinc      6447 Mar 10 15:35 init_data.xml
[2026-03-10 16:41:18] -rw-r--r-- 1 boinc boinc         0 Mar 10 15:35 boinc_lockfile
[2026-03-10 16:41:18] -rw-r--r-- 1 boinc boinc      2517 Mar 10 15:35 pandaJob.out
[2026-03-10 16:41:18] -rw------- 1 boinc boinc   1006737 Mar 10 15:36 agis_schedconf.cvmfs.json
[2026-03-10 16:41:18] -rw------- 1 boinc boinc   1511578 Mar 10 15:36 agis_ddmendpoints.agis.ALL.json
[2026-03-10 16:41:18] -rw------- 1 boinc boinc       426 Mar 10 15:36 workernode_map.json
[2026-03-10 16:41:18] drwx------ 5 boinc boinc      4096 Mar 10 15:36 pilot3
[2026-03-10 16:41:18] -rw------- 1 boinc boinc 149681026 Mar 10 16:40 HITS.48700858._001506.pool.root.1
[2026-03-10 16:41:18] -rw-r--r-- 1 boinc boinc       529 Mar 10 16:40 boinc_task_state.xml
[2026-03-10 16:41:18] -rw------- 1 boinc boinc        95 Mar 10 16:40 pilot_heartbeat.json
[2026-03-10 16:41:18] -rw------- 1 boinc boinc      1014 Mar 10 16:40 memory_monitor_summary.json
[2026-03-10 16:41:18] -rw------- 1 boinc boinc    224028 Mar 10 16:40 log.48700858._001506.job.log.tgz.1
[2026-03-10 16:41:18] -rw------- 1 boinc boinc      6302 Mar 10 16:40 heartbeat.json
[2026-03-10 16:41:18] -rw-r--r-- 1 boinc boinc      8192 Mar 10 16:41 boinc_mmap_file
[2026-03-10 16:41:18] -rw-r--r-- 1 boinc boinc        27 Mar 10 16:41 wrapper_checkpoint.txt
[2026-03-10 16:41:18] -rw------- 1 boinc boinc      4934 Mar 10 16:41 pilotlog.txt
[2026-03-10 16:41:18] -rw------- 1 boinc boinc    580231 Mar 10 16:41 log.48700858._001506.job.log.1
[2026-03-10 16:41:18] -rw------- 1 boinc boinc       357 Mar 10 16:41 output.list
[2026-03-10 16:41:18] -rw-r--r-- 1 boinc boinc       620 Mar 10 16:41 runtime_log
[2026-03-10 16:41:18] -rw------- 1 boinc boinc    819200 Mar 10 16:41 result.tar.gz
[2026-03-10 16:41:18] -rw-r--r-- 1 boinc boinc      8911 Mar 10 16:41 runtime_log.err
[2026-03-10 16:41:18] -rw------- 1 boinc boinc       660 Mar 10 16:41 q3TLDmpm6G9n9Rq4apOajLDm4fhM0noT9bVooX4SDmq89KDms74hDo.diag
[2026-03-10 16:41:18] -rw-r--r-- 1 boinc boinc     12474 Mar 10 16:41 stderr.txt
[2026-03-10 16:41:18] HITS file was successfully produced:
[2026-03-10 16:41:18] -rw------- 1 boinc boinc 149681026 Mar 10 16:40 shared/HITS.pool.root.1
[2026-03-10 16:41:18]  *** Contents of shared directory: ***
[2026-03-10 16:41:18] total 334632
[2026-03-10 16:41:18] -rw-r--r-- 2 boinc boinc 191541660 Mar 10 15:35 ATLAS.root_0
[2026-03-10 16:41:18] -rw-r--r-- 2 boinc boinc    597926 Mar 10 15:35 input.tar.gz
[2026-03-10 16:41:18] -rw-r--r-- 2 boinc boinc     15845 Mar 10 15:35 start_atlas.sh
[2026-03-10 16:41:18] -rw------- 1 boinc boinc 149681026 Mar 10 16:40 HITS.pool.root.1
[2026-03-10 16:41:18] -rw------- 1 boinc boinc    819200 Mar 10 16:41 result.tar.gz
16:41:20 (2464829): run_atlas exited; CPU time 10857.470709
16:41:20 (2464829): called boinc_finish(0)

</stderr_txt>
]]>

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