Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
08:40:42 (2085196): wrapper (7.7.26015): starting
08:40:42 (2085196): wrapper: running run_atlas (--nthreads 4)
[2026-03-10 08:40:42] Arguments: --nthreads 4
[2026-03-10 08:40:42] Threads: 4
[2026-03-10 08:40:42] Checking for CVMFS
[2026-03-10 08:40:42] No cvmfs_config command found, will try listing directly
[2026-03-10 08:40:42] CVMFS is ok
[2026-03-10 08:40:42] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-10 08:40:42] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-10 08:40:42] Further information can be found at the LHC@home message board.
[2026-03-10 08:40:42] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-10 08:40:42] Checking for apptainer binary...
[2026-03-10 08:40:42] which: no apptainer in ((null))
[2026-03-10 08:40:42] apptainer is not installed, using version from CVMFS
[2026-03-10 08:40:42] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-10 08:40:42] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot16/slots/6/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut06.grid.cesnet.cz
[2026-03-10 08:40:42] apptainer works
[2026-03-10 08:40:42] Set ATHENA_PROC_NUMBER=4
[2026-03-10 08:40:42] Set ATHENA_CORE_NUMBER=4
[2026-03-10 08:40:42] Starting ATLAS job with PandaID=7041380089
[2026-03-10 08:40:42] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot16/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-10 11:38:22]  *** The last 200 lines of the pilot log: ***
[2026-03-10 11:38:22] 2026-03-10 10:37:35,851 | INFO     | extracted standard memory fields from prmon json
[2026-03-10 11:38:22] 2026-03-10 10:37:35,851 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-10 11:38:22] 2026-03-10 10:37:35,851 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-10 11:38:22] 2026-03-10 10:37:35,851 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-10 11:38:22] 2026-03-10 10:37:35,854 | INFO     | fitting pss+swap vs Time
[2026-03-10 11:38:22] 2026-03-10 10:37:35,855 | INFO     | sum of square deviations: 1633472487.5
[2026-03-10 11:38:22] 2026-03-10 10:37:35,856 | INFO     | sum of deviations: 4909941544.999998
[2026-03-10 11:38:22] 2026-03-10 10:37:35,856 | INFO     | mean x: 1773133759.5
[2026-03-10 11:38:22] 2026-03-10 10:37:35,856 | INFO     | mean y: 2297329.9655172415
[2026-03-10 11:38:22] 2026-03-10 10:37:35,856 | INFO     | intersect: -5327442336.440149
[2026-03-10 11:38:22] 2026-03-10 10:37:35,856 | INFO     | chi2: 2.1253178491081544
[2026-03-10 11:38:22] 2026-03-10 10:37:35,856 | INFO     | sum of square deviations: 1496660620.0
[2026-03-10 11:38:22] 2026-03-10 10:37:35,857 | INFO     | sum of deviations: 15546503614.999998
[2026-03-10 11:38:22] 2026-03-10 10:37:35,858 | INFO     | mean x: 1773133607.0
[2026-03-10 11:38:22] 2026-03-10 10:37:35,858 | INFO     | mean y: 2308903.1834319527
[2026-03-10 11:38:22] 2026-03-10 10:37:35,858 | INFO     | intersect: -18416047043.87388
[2026-03-10 11:38:22] 2026-03-10 10:37:35,858 | INFO     | chi2: 1.3167121568943623
[2026-03-10 11:38:22] 2026-03-10 10:37:35,858 | INFO     | current chi2=1.3167121568943623 (change=38.0463417532162 %)
[2026-03-10 11:38:22] 2026-03-10 10:37:35,858 | INFO     | sum of square deviations: 1367709365.0
[2026-03-10 11:38:22] 2026-03-10 10:37:35,859 | INFO     | sum of deviations: 15075210203.499994
[2026-03-10 11:38:22] 2026-03-10 10:37:35,859 | INFO     | mean x: 1773133454.5
[2026-03-10 11:38:22] 2026-03-10 10:37:35,859 | INFO     | mean y: 2308345.6402439023
[2026-03-10 11:38:22] 2026-03-10 10:37:35,860 | INFO     | intersect: -19541580311.907696
[2026-03-10 11:38:22] 2026-03-10 10:37:35,860 | INFO     | chi2: 1.3178443213111393
[2026-03-10 11:38:22] 2026-03-10 10:37:35,860 | INFO     | current chi2=1.3178443213111393 (change=-0.08598420017988978 %)
[2026-03-10 11:38:22] 2026-03-10 10:37:35,860 | INFO     | right removable region: 163
[2026-03-10 11:38:22] 2026-03-10 10:37:35,860 | INFO     | sum of square deviations: 1496660620.0
[2026-03-10 11:38:22] 2026-03-10 10:37:35,861 | INFO     | sum of deviations: -16083050099.0
[2026-03-10 11:38:22] 2026-03-10 10:37:35,861 | INFO     | mean x: 1773133912.0
[2026-03-10 11:38:22] 2026-03-10 10:37:35,861 | INFO     | mean y: 2320356.5562130176
[2026-03-10 11:38:22] 2026-03-10 10:37:35,862 | INFO     | intersect: 19056340458.27564
[2026-03-10 11:38:22] 2026-03-10 10:37:35,862 | INFO     | chi2: 0.8405381367529027
[2026-03-10 11:38:22] 2026-03-10 10:37:35,862 | INFO     | current chi2=0.8405381367529027 (change=60.45117970916129 %)
[2026-03-10 11:38:22] 2026-03-10 10:37:35,862 | INFO     | sum of square deviations: 1367709365.0
[2026-03-10 11:38:22] 2026-03-10 10:37:35,863 | INFO     | sum of deviations: -14059762845.5
[2026-03-10 11:38:22] 2026-03-10 10:37:35,863 | INFO     | mean x: 1773134064.5
[2026-03-10 11:38:22] 2026-03-10 10:37:35,863 | INFO     | mean y: 2317977.5792682925
[2026-03-10 11:38:22] 2026-03-10 10:37:35,864 | INFO     | intersect: 18229760940.322674
[2026-03-10 11:38:22] 2026-03-10 10:37:35,864 | INFO     | chi2: 0.8379257061044553
[2026-03-10 11:38:22] 2026-03-10 10:37:35,864 | INFO     | current chi2=0.8379257061044553 (change=0.310804535120742 %)
[2026-03-10 11:38:22] 2026-03-10 10:37:35,864 | INFO     | left removable region: 20
[2026-03-10 11:38:22] 2026-03-10 10:37:35,864 | INFO     | sum of square deviations: 906703512.0
[2026-03-10 11:38:22] 2026-03-10 10:37:35,865 | INFO     | sum of deviations: -1691550923.0000002
[2026-03-10 11:38:22] 2026-03-10 10:37:35,865 | INFO     | mean x: 1773134034.0
[2026-03-10 11:38:22] 2026-03-10 10:37:35,865 | INFO     | mean y: 2328514.72027972
[2026-03-10 11:38:22] 2026-03-10 10:37:35,865 | INFO     | intersect: 3310296855.109165
[2026-03-10 11:38:22] 2026-03-10 10:37:35,865 | INFO     | chi2: 0.0033724117746813673
[2026-03-10 11:38:22] 2026-03-10 10:37:35,866 | INFO     | current memory leak: -1.87 B/s (using 143 data points, chi2=0.00)
[2026-03-10 11:38:22] 2026-03-10 10:37:35,866 | INFO     | could have reported an average CPU frequency of 2493 MHz (9 samples)
[2026-03-10 11:38:22] 2026-03-10 10:37:35,866 | INFO     | ..............................
[2026-03-10 11:38:22] 2026-03-10 10:37:35,866 | INFO     | . Timing measurements:
[2026-03-10 11:38:22] 2026-03-10 10:37:35,866 | INFO     | . get job = 0 s
[2026-03-10 11:38:22] 2026-03-10 10:37:35,866 | INFO     | . initial setup = 6 s
[2026-03-10 11:38:22] 2026-03-10 10:37:35,867 | INFO     | . payload setup = 6 s
[2026-03-10 11:38:22] 2026-03-10 10:37:35,867 | INFO     | . stage-in = 0 s
[2026-03-10 11:38:22] 2026-03-10 10:37:35,867 | INFO     | . payload execution = 10574 s
[2026-03-10 11:38:22] 2026-03-10 10:37:35,867 | INFO     | . stage-out = 0 s
[2026-03-10 11:38:22] 2026-03-10 10:37:35,867 | INFO     | . log creation = 0 s
[2026-03-10 11:38:22] 2026-03-10 10:37:35,867 | INFO     | ..............................
[2026-03-10 11:38:22] 2026-03-10 10:37:35,956 | INFO     | 
[2026-03-10 11:38:22] 2026-03-10 10:37:35,957 | INFO     | job summary report
[2026-03-10 11:38:22] 2026-03-10 10:37:35,957 | INFO     | --------------------------------------------------
[2026-03-10 11:38:22] 2026-03-10 10:37:35,957 | INFO     | PanDA job id: 7041380089
[2026-03-10 11:38:22] 2026-03-10 10:37:35,957 | INFO     | task id: 48955006
[2026-03-10 11:38:22] 2026-03-10 10:37:35,957 | INFO     | errors: (none)
[2026-03-10 11:38:22] 2026-03-10 10:37:35,957 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-10 11:38:22] 2026-03-10 10:37:35,957 | INFO     | pilot state: finished 
[2026-03-10 11:38:22] 2026-03-10 10:37:35,958 | INFO     | transexitcode: 0
[2026-03-10 11:38:22] 2026-03-10 10:37:35,958 | INFO     | exeerrorcode: 0
[2026-03-10 11:38:22] 2026-03-10 10:37:35,958 | INFO     | exeerrordiag: 
[2026-03-10 11:38:22] 2026-03-10 10:37:35,958 | INFO     | exitcode: 0
[2026-03-10 11:38:22] 2026-03-10 10:37:35,958 | INFO     | exitmsg: OK
[2026-03-10 11:38:22] 2026-03-10 10:37:35,958 | INFO     | cpuconsumptiontime: 40505 s
[2026-03-10 11:38:22] 2026-03-10 10:37:35,958 | INFO     | nevents: 400
[2026-03-10 11:38:22] 2026-03-10 10:37:35,958 | INFO     | neventsw: 0
[2026-03-10 11:38:22] 2026-03-10 10:37:35,958 | INFO     | pid: 2094109
[2026-03-10 11:38:22] 2026-03-10 10:37:35,958 | INFO     | pgrp: 2094109
[2026-03-10 11:38:22] 2026-03-10 10:37:35,958 | INFO     | corecount: 4
[2026-03-10 11:38:22] 2026-03-10 10:37:35,958 | INFO     | event service: False
[2026-03-10 11:38:22] 2026-03-10 10:37:35,958 | INFO     | sizes: {0: 2280183, 1: 2280243, 11: 2280271, 10584: 2308975, 10586: 2318253}
[2026-03-10 11:38:22] 2026-03-10 10:37:35,958 | INFO     | --------------------------------------------------
[2026-03-10 11:38:22] 2026-03-10 10:37:35,959 | INFO     | 
[2026-03-10 11:38:22] 2026-03-10 10:37:35,959 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot16/slots/6
[2026-03-10 11:38:22] 2026-03-10 10:37:35,989 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-10 11:38:22] 2026-03-10 10:37:35,989 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-10 11:38:22] 2026-03-10 10:37:35,990 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-10 11:38:22] 2026-03-10 10:37:35,990 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-10 11:38:22] 2026-03-10 10:37:35,990 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-10 11:38:22] 2026-03-10 10:37:35,990 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-10 11:38:22] 2026-03-10 10:37:35,990 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-10 11:38:22] 2026-03-10 10:37:35,990 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-10 11:38:22] 2026-03-10 10:37:35,990 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-10 11:38:22] 2026-03-10 10:37:35,990 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-10 11:38:22] 2026-03-10 10:37:35,990 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-10 11:38:22] 2026-03-10 10:37:35,990 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-10 11:38:22] 2026-03-10 10:37:35,990 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-10 11:38:22] 2026-03-10 10:37:35,991 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-10 11:38:22] 2026-03-10 10:37:35,991 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-10 11:38:22] 2026-03-10 10:37:35,991 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-10 11:38:22] 2026-03-10 10:37:35,991 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-10 11:38:22] 2026-03-10 10:37:35,991 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-10 11:38:22] 2026-03-10 10:37:35,991 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-10 11:38:22] 2026-03-10 10:37:35,991 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-10 11:38:22] 2026-03-10 10:37:35,991 | INFO     | job 7041380089 has completed (purged errors)
[2026-03-10 11:38:22] 2026-03-10 10:37:35,991 | INFO     | overall cleanup function is called
[2026-03-10 11:38:22] 2026-03-10 10:37:36,750 | WARNING  | process 2094109 can no longer be monitored (due to stat problems) - aborting
[2026-03-10 11:38:22] 2026-03-10 10:37:36,999 | INFO     | --- collectZombieJob: --- 10, [2094109]
[2026-03-10 11:38:22] 2026-03-10 10:37:36,999 | INFO     | zombie collector waiting for pid 2094109
[2026-03-10 11:38:22] 2026-03-10 10:37:37,000 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-10 11:38:22] 2026-03-10 10:37:37,000 | INFO     | collected zombie processes
[2026-03-10 11:38:22] 2026-03-10 10:37:37,000 | INFO     | will attempt to kill all subprocesses of pid=2094109
[2026-03-10 11:38:22] 2026-03-10 10:37:37,029 | INFO     | using path: /var/lib/boinc/var/slot16/slots/6/memory_monitor_summary.json (trf name=prmon)
[2026-03-10 11:38:22] 2026-03-10 10:37:37,830 | INFO     | process IDs to be killed: [2094109] (in reverse order)
[2026-03-10 11:38:22] 2026-03-10 10:37:37,839 | INFO     | number of running child processes to parent process 2094109: 1
[2026-03-10 11:38:22] 2026-03-10 10:37:37,840 | INFO     | maximum number of monitored processes: 6
[2026-03-10 11:38:22] 2026-03-10 10:37:37,840 | INFO     | aborting job monitoring since job object (job id=7041380089) has expired
[2026-03-10 11:38:22] 2026-03-10 10:37:37,945 | WARNING  | found no corresponding commands to process id(s)
[2026-03-10 11:38:22] 2026-03-10 10:37:37,945 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-10 11:38:22] 2026-03-10 10:37:37,958 | INFO     | did not find any defunct processes belonging to 2094109
[2026-03-10 11:38:22] 2026-03-10 10:37:37,970 | INFO     | did not find any defunct processes belonging to 2094109
[2026-03-10 11:38:22] 2026-03-10 10:37:37,970 | INFO     | ready for new job
[2026-03-10 11:38:22] 2026-03-10 10:37:37,970 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-10 11:38:22] 2026-03-10 10:37:37,972 | INFO     | **************************************
[2026-03-10 11:38:22] 2026-03-10 10:37:37,973 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-10 11:38:22] 2026-03-10 10:37:37,973 | INFO     | **************************************
[2026-03-10 11:38:22] 2026-03-10 10:37:37,973 | INFO     | 
[2026-03-10 11:38:22] 2026-03-10 10:37:37,976 | INFO     | architecture information:
[2026-03-10 11:38:22] 2026-03-10 10:37:37,976 | INFO     | executing command: cat /etc/os-release
[2026-03-10 11:38:22] 2026-03-10 10:37:37,995 | INFO     | cat /etc/os-release:
[2026-03-10 11:38:22] NAME="CentOS Linux"
[2026-03-10 11:38:22] VERSION="7 (Core)"
[2026-03-10 11:38:22] ID="centos"
[2026-03-10 11:38:22] ID_LIKE="rhel fedora"
[2026-03-10 11:38:22] VERSION_ID="7"
[2026-03-10 11:38:22] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-10 11:38:22] ANSI_COLOR="0;31"
[2026-03-10 11:38:22] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-10 11:38:22] HOME_URL="https://www.centos.org/"
[2026-03-10 11:38:22] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-10 11:38:22] 
[2026-03-10 11:38:22] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-10 11:38:22] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-10 11:38:22] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-10 11:38:22] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-10 11:38:22] 
[2026-03-10 11:38:22] 2026-03-10 10:37:37,995 | INFO     | **************************************
[2026-03-10 11:38:22] 2026-03-10 10:37:38,498 | INFO     | executing command: df -mP /var/lib/boinc/var/slot16/slots/6
[2026-03-10 11:38:22] 2026-03-10 10:37:38,515 | INFO     | sufficient remaining disk space (20469252096 B)
[2026-03-10 11:38:22] 2026-03-10 10:37:38,515 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-10 11:38:22] 2026-03-10 10:37:38,515 | INFO     | current server update state: UPDATING_FINAL
[2026-03-10 11:38:22] 2026-03-10 10:37:38,515 | INFO     | update_server=False
[2026-03-10 11:38:22] 2026-03-10 10:37:38,516 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-10 11:38:22] 2026-03-10 10:37:38,516 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-10 11:38:22] 2026-03-10 10:37:38,516 | INFO     | will abort loop
[2026-03-10 11:38:22] 2026-03-10 10:37:38,664 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-10 11:38:22] 2026-03-10 10:37:38,757 | INFO     | all job control threads have been joined
[2026-03-10 11:38:22] 2026-03-10 10:37:38,949 | INFO     | all data control threads have been joined
[2026-03-10 11:38:22] 2026-03-10 10:37:39,040 | INFO     | all payload control threads have been joined
[2026-03-10 11:38:22] 2026-03-10 10:37:39,520 | INFO     | [job] retrieve thread has finished
[2026-03-10 11:38:22] 2026-03-10 10:37:39,521 | INFO     | [job] job monitor thread has finished
[2026-03-10 11:38:22] 2026-03-10 10:37:39,523 | INFO     | [data] copytool_in thread has finished
[2026-03-10 11:38:22] 2026-03-10 10:37:39,600 | INFO     | [payload] validate_pre thread has finished
[2026-03-10 11:38:22] 2026-03-10 10:37:39,762 | INFO     | [job] control thread has finished
[2026-03-10 11:38:22] 2026-03-10 10:37:39,832 | INFO     | [payload] execute_payloads thread has finished
[2026-03-10 11:38:22] 2026-03-10 10:37:39,954 | INFO     | [data] control thread has finished
[2026-03-10 11:38:22] 2026-03-10 10:37:40,045 | INFO     | [payload] control thread has finished
[2026-03-10 11:38:22] 2026-03-10 10:37:40,174 | INFO     | [payload] failed_post thread has finished
[2026-03-10 11:38:22] 2026-03-10 10:37:40,386 | INFO     | [payload] validate_post thread has finished
[2026-03-10 11:38:22] 2026-03-10 10:37:40,389 | INFO     | [job] create_data_payload thread has finished
[2026-03-10 11:38:22] 2026-03-10 10:37:40,419 | INFO     | [job] validate thread has finished
[2026-03-10 11:38:22] 2026-03-10 10:37:40,669 | INFO     | [data] copytool_out thread has finished
[2026-03-10 11:38:22] 2026-03-10 10:37:40,784 | INFO     | job.realtimelogging is not enabled
[2026-03-10 11:38:22] 2026-03-10 10:37:40,966 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-10 11:38:22] 2026-03-10 10:37:41,767 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-10 11:38:22] 2026-03-10 10:37:41,789 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-10 11:38:22] 2026-03-10 10:37:41,971 | INFO     | [job] queue monitor thread has finished
[2026-03-10 11:38:22] 2026-03-10 10:37:45,773 | INFO     | [data] queue_monitor thread has finished
[2026-03-10 11:38:22] 2026-03-10 10:38:08,044 | INFO     | PID=2089296 has CPU usage=8.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-10 11:38:22] 2026-03-10 10:38:08,045 | INFO     | .. there are 16 such processes running
[2026-03-10 11:38:22] 2026-03-10 10:38:08,045 | INFO     | found 0 job(s) in 20 queues
[2026-03-10 11:38:22] 2026-03-10 10:38:08,045 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-10 11:38:22] 2026-03-10 10:38:08,045 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-10 11:38:22] 2026-03-10 10:38:15,858 | INFO     | [monitor] cgroup control has ended
[2026-03-10 11:38:22] 2026-03-10 10:38:17,014 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22717510772544)>', '<ExcThread(monitor, started 22717268236032)>']
[2026-03-10 11:38:22] 2026-03-10 10:38:17,090 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-10 11:38:22] 2026-03-10 10:38:17,090 | INFO     | [monitor] control thread has ended
[2026-03-10 11:38:22] 2026-03-10 10:38:22,039 | INFO     | all workflow threads have been joined
[2026-03-10 11:38:22] 2026-03-10 10:38:22,039 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-10 11:38:22] 2026-03-10 10:38:22,039 | INFO     | traces error code: 0
[2026-03-10 11:38:22] 2026-03-10 10:38:22,040 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-10 11:38:22] 2026-03-10 10:38:22,172 [wrapper] ==== pilot stdout END ====
[2026-03-10 11:38:22] 2026-03-10 10:38:22,175 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-10 11:38:22] 2026-03-10 10:38:22,189 [wrapper] pilotpid: 2089296
[2026-03-10 11:38:22] 2026-03-10 10:38:22,196 [wrapper] Pilot exit status: 0
[2026-03-10 11:38:22] 2026-03-10 10:38:22,289 [wrapper] pandaids: 7041380089
[2026-03-10 11:38:22] 2026-03-10 10:38:22,413 [wrapper] cleanup supervisor_pilot 2336322 2089297
[2026-03-10 11:38:22] 2026-03-10 10:38:22,416 [wrapper] Test setup, not cleaning
[2026-03-10 11:38:22] 2026-03-10 10:38:22,419 [wrapper] apfmon messages muted
[2026-03-10 11:38:22] 2026-03-10 10:38:22,422 [wrapper] ==== wrapper stdout END ====
[2026-03-10 11:38:22] 2026-03-10 10:38:22,427 [wrapper] ==== wrapper stderr END ====
[2026-03-10 11:38:22]  *** Error codes and diagnostics ***
[2026-03-10 11:38:22]     "exeErrorCode": 0,
[2026-03-10 11:38:22]     "exeErrorDiag": "",
[2026-03-10 11:38:22]     "pilotErrorCode": 0,
[2026-03-10 11:38:22]     "pilotErrorDiag": "",
[2026-03-10 11:38:22]  *** Listing of results directory ***
[2026-03-10 11:38:22] total 612428
[2026-03-10 11:38:22] -rw-r--r--. 1 boinc boinc    584627 Mar 10 00:46 pilot3.tar.gz
[2026-03-10 11:38:22] -rwx------. 1 boinc boinc     36322 Mar 10 00:46 runpilot2-wrapper.sh
[2026-03-10 11:38:22] -rw-r--r--. 1 boinc boinc      5111 Mar 10 00:46 queuedata.json
[2026-03-10 11:38:22] -rw-r--r--. 1 boinc boinc       100 Mar 10 08:40 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-10 11:38:22] -rwxr-xr-x. 1 boinc boinc      7986 Mar 10 08:40 run_atlas
[2026-03-10 11:38:22] -rw-r--r--. 1 boinc boinc       105 Mar 10 08:40 job.xml
[2026-03-10 11:38:22] -rw-r--r--. 2 boinc boinc 441186994 Mar 10 08:40 EVNT.46701403._000717.pool.root.1
[2026-03-10 11:38:22] -rw-r--r--. 1 boinc boinc      6561 Mar 10 08:40 init_data.xml
[2026-03-10 11:38:22] -rw-r--r--. 2 boinc boinc     15845 Mar 10 08:40 start_atlas.sh
[2026-03-10 11:38:22] drwxrwx--x. 2 boinc boinc      4096 Mar 10 08:40 shared
[2026-03-10 11:38:22] -rw-r--r--. 2 boinc boinc    597960 Mar 10 08:40 input.tar.gz
[2026-03-10 11:38:22] -rw-r--r--. 1 boinc boinc         0 Mar 10 08:40 boinc_lockfile
[2026-03-10 11:38:22] -rw-r--r--. 1 boinc boinc      2565 Mar 10 08:40 pandaJob.out
[2026-03-10 11:38:22] -rw-------. 1 boinc boinc   1005057 Mar 10 08:40 agis_schedconf.cvmfs.json
[2026-03-10 11:38:22] -rw-------. 1 boinc boinc   1511578 Mar 10 08:40 agis_ddmendpoints.agis.ALL.json
[2026-03-10 11:38:22] -rw-------. 1 boinc boinc       452 Mar 10 08:40 workernode_map.json
[2026-03-10 11:38:22] drwx------. 5 boinc boinc      4096 Mar 10 08:40 pilot3
[2026-03-10 11:38:22] -rw-------. 1 boinc boinc 178224620 Mar 10 11:36 HITS.48955006._035874.pool.root.1
[2026-03-10 11:38:22] -rw-r--r--. 1 boinc boinc       531 Mar 10 11:37 boinc_task_state.xml
[2026-03-10 11:38:22] -rw-------. 1 boinc boinc        95 Mar 10 11:37 pilot_heartbeat.json
[2026-03-10 11:38:22] -rw-------. 1 boinc boinc      1033 Mar 10 11:37 memory_monitor_summary.json
[2026-03-10 11:38:22] -rw-------. 1 boinc boinc    390362 Mar 10 11:37 log.48955006._035874.job.log.tgz.1
[2026-03-10 11:38:22] -rw-------. 1 boinc boinc      6406 Mar 10 11:37 heartbeat.json
[2026-03-10 11:38:22] -rw-r--r--. 1 boinc boinc        28 Mar 10 11:38 wrapper_checkpoint.txt
[2026-03-10 11:38:22] -rw-r--r--. 1 boinc boinc      8192 Mar 10 11:38 boinc_mmap_file
[2026-03-10 11:38:22] -rw-------. 1 boinc boinc      4903 Mar 10 11:38 pilotlog.txt
[2026-03-10 11:38:22] -rw-------. 1 boinc boinc   1501228 Mar 10 11:38 log.48955006._035874.job.log.1
[2026-03-10 11:38:22] -rw-------. 1 boinc boinc       357 Mar 10 11:38 output.list
[2026-03-10 11:38:22] -rw-r--r--. 1 boinc boinc       620 Mar 10 11:38 runtime_log
[2026-03-10 11:38:22] -rw-------. 1 boinc boinc   1904640 Mar 10 11:38 result.tar.gz
[2026-03-10 11:38:22] -rw-r--r--. 1 boinc boinc      9205 Mar 10 11:38 runtime_log.err
[2026-03-10 11:38:22] -rw-------. 1 boinc boinc       664 Mar 10 11:38 OWMMDm2TzJ9n9Rq4apOajLDm4fhM0noT9bVooX4SDmMRbLDm46GtJn.diag
[2026-03-10 11:38:22] -rw-r--r--. 1 boinc boinc     20836 Mar 10 11:38 stderr.txt
[2026-03-10 11:38:22] HITS file was successfully produced:
[2026-03-10 11:38:22] -rw-------. 1 boinc boinc 178224620 Mar 10 11:36 shared/HITS.pool.root.1
[2026-03-10 11:38:22]  *** Contents of shared directory: ***
[2026-03-10 11:38:22] total 607364
[2026-03-10 11:38:22] -rw-r--r--. 2 boinc boinc 441186994 Mar 10 08:40 ATLAS.root_0
[2026-03-10 11:38:22] -rw-r--r--. 2 boinc boinc     15845 Mar 10 08:40 start_atlas.sh
[2026-03-10 11:38:22] -rw-r--r--. 2 boinc boinc    597960 Mar 10 08:40 input.tar.gz
[2026-03-10 11:38:22] -rw-------. 1 boinc boinc 178224620 Mar 10 11:36 HITS.pool.root.1
[2026-03-10 11:38:22] -rw-------. 1 boinc boinc   1904640 Mar 10 11:38 result.tar.gz
11:38:24 (2085196): run_atlas exited; CPU time 40873.562237
11:38:24 (2085196): called boinc_finish(0)

</stderr_txt>
]]>

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