Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
17:50:27 (1654519): wrapper (7.7.26015): starting
17:50:27 (1654519): wrapper: running run_atlas (--nthreads 4)
[2026-03-10 17:50:27] Arguments: --nthreads 4
[2026-03-10 17:50:27] Threads: 4
[2026-03-10 17:50:27] Checking for CVMFS
[2026-03-10 17:50:27] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-10 17:50:27] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-10 17:50:27] Running cvmfs_config stat atlas.cern.ch
[2026-03-10 17:50:28] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-10 17:50:28] 2.9.2.0 3039 9128 101136 157122 2 50 29707917 36864001 0 130560 0 4623469 99.986 340199 11768 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-10 17:50:28] CVMFS is ok
[2026-03-10 17:50:28] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-10 17:50:28] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-10 17:50:28] Further information can be found at the LHC@home message board.
[2026-03-10 17:50:28] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-10 17:50:28] Checking for apptainer binary...
[2026-03-10 17:50:28] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-10 17:50:28] Running /usr/bin/apptainer --version
[2026-03-10 17:50:28] apptainer version 1.4.1-1.1
[2026-03-10 17:50:28] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-10 17:50:28] thA334
[2026-03-10 17:50:28] apptainer works
[2026-03-10 17:50:28] Set ATHENA_PROC_NUMBER=4
[2026-03-10 17:50:28] Set ATHENA_CORE_NUMBER=4
[2026-03-10 17:50:28] Starting ATLAS job with PandaID=7041592384
[2026-03-10 17:50:28] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-10 18:55:54]  *** The last 200 lines of the pilot log: ***
[2026-03-10 18:55:54] 2026-03-10 17:55:23,392 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-10 18:55:54] 2026-03-10 17:55:23,392 | INFO     | collected zombie processes
[2026-03-10 18:55:54] 2026-03-10 17:55:23,392 | INFO     | will attempt to kill all subprocesses of pid=1663148
[2026-03-10 18:55:54] 2026-03-10 17:55:23,433 | INFO     | process IDs to be killed: [1663148] (in reverse order)
[2026-03-10 18:55:54] 2026-03-10 17:55:23,464 | WARNING  | found no corresponding commands to process id(s)
[2026-03-10 18:55:54] 2026-03-10 17:55:23,465 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-10 18:55:54] 2026-03-10 17:55:23,466 | INFO     | did not find any defunct processes belonging to 1663148
[2026-03-10 18:55:54] 2026-03-10 17:55:23,467 | INFO     | did not find any defunct processes belonging to 1663148
[2026-03-10 18:55:54] 2026-03-10 17:55:23,467 | INFO     | ready for new job
[2026-03-10 18:55:54] 2026-03-10 17:55:23,467 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-10 18:55:54] 2026-03-10 17:55:23,468 | INFO     | **************************************
[2026-03-10 18:55:54] 2026-03-10 17:55:23,468 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-10 18:55:54] 2026-03-10 17:55:23,468 | INFO     | **************************************
[2026-03-10 18:55:54] 2026-03-10 17:55:23,468 | INFO     | 
[2026-03-10 18:55:54] 2026-03-10 17:55:23,469 | INFO     | architecture information:
[2026-03-10 18:55:54] 2026-03-10 17:55:23,469 | INFO     | executing command: cat /etc/os-release
[2026-03-10 18:55:54] 2026-03-10 17:55:23,482 | INFO     | cat /etc/os-release:
[2026-03-10 18:55:54] NAME="CentOS Linux"
[2026-03-10 18:55:54] VERSION="7 (Core)"
[2026-03-10 18:55:54] ID="centos"
[2026-03-10 18:55:54] ID_LIKE="rhel fedora"
[2026-03-10 18:55:54] VERSION_ID="7"
[2026-03-10 18:55:54] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-10 18:55:54] ANSI_COLOR="0;31"
[2026-03-10 18:55:54] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-10 18:55:54] HOME_URL="https://www.centos.org/"
[2026-03-10 18:55:54] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-10 18:55:54] 
[2026-03-10 18:55:54] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-10 18:55:54] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-10 18:55:54] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-10 18:55:54] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-10 18:55:54] 
[2026-03-10 18:55:54] 2026-03-10 17:55:23,483 | INFO     | **************************************
[2026-03-10 18:55:54] 2026-03-10 17:55:23,986 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-10 18:55:54] 2026-03-10 17:55:24,004 | INFO     | sufficient remaining disk space (227280945152 B)
[2026-03-10 18:55:54] 2026-03-10 17:55:24,004 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-10 18:55:54] 2026-03-10 17:55:24,004 | INFO     | current server update state: UPDATING_FINAL
[2026-03-10 18:55:54] 2026-03-10 17:55:24,005 | INFO     | update_server=False
[2026-03-10 18:55:54] 2026-03-10 17:55:24,005 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-10 18:55:54] 2026-03-10 17:55:24,005 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-10 18:55:54] 2026-03-10 17:55:24,005 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-10 18:55:54] 2026-03-10 17:55:24,036 | INFO     | all job control threads have been joined
[2026-03-10 18:55:54] 2026-03-10 17:55:24,411 | INFO     | all payload control threads have been joined
[2026-03-10 18:55:54] 2026-03-10 17:55:24,450 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-10 18:55:54] 2026-03-10 17:55:24,450 | INFO     | aborting loop
[2026-03-10 18:55:54] 2026-03-10 17:55:24,647 | INFO     | all data control threads have been joined
[2026-03-10 18:55:54] 2026-03-10 17:55:25,010 | INFO     | [job] queue monitor thread has finished
[2026-03-10 18:55:54] 2026-03-10 17:55:25,011 | INFO     | [job] retrieve thread has finished
[2026-03-10 18:55:54] 2026-03-10 17:55:25,041 | INFO     | [job] control thread has finished
[2026-03-10 18:55:54] 2026-03-10 17:55:25,313 | INFO     | [payload] execute_payloads thread has finished
[2026-03-10 18:55:54] 2026-03-10 17:55:25,416 | INFO     | [payload] control thread has finished
[2026-03-10 18:55:54] 2026-03-10 17:55:25,456 | INFO     | [job] job monitor thread has finished
[2026-03-10 18:55:54] 2026-03-10 17:55:25,653 | INFO     | [data] control thread has finished
[2026-03-10 18:55:54] 2026-03-10 17:55:25,693 | INFO     | [payload] failed_post thread has finished
[2026-03-10 18:55:54] 2026-03-10 17:55:26,011 | INFO     | [data] copytool_out thread has finished
[2026-03-10 18:55:54] 2026-03-10 17:55:26,232 | INFO     | [job] validate thread has finished
[2026-03-10 18:55:54] 2026-03-10 17:55:26,233 | INFO     | [payload] validate_post thread has finished
[2026-03-10 18:55:54] 2026-03-10 17:55:26,337 | INFO     | [job] create_data_payload thread has finished
[2026-03-10 18:55:54] 2026-03-10 17:55:26,383 | INFO     | [payload] validate_pre thread has finished
[2026-03-10 18:55:54] 2026-03-10 17:55:26,502 | INFO     | [data] copytool_in thread has finished
[2026-03-10 18:55:54] 2026-03-10 17:55:27,333 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-10 18:55:54] 2026-03-10 17:55:31,340 | INFO     | [data] queue_monitor thread has finished
[2026-03-10 18:55:54] 2026-03-10 17:55:34,282 | INFO     | job.realtimelogging is not enabled
[2026-03-10 18:55:54] 2026-03-10 17:55:35,288 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-10 18:55:54] 2026-03-10 17:55:46,442 | INFO     | [monitor] cgroup control has ended
[2026-03-10 18:55:54] 2026-03-10 17:55:46,863 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139846627637056)>', '<ExcThread(monitor, started 139845410223872)>']
[2026-03-10 18:55:54] 2026-03-10 17:55:51,888 | INFO     | all workflow threads have been joined
[2026-03-10 18:55:54] 2026-03-10 17:55:51,888 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-10 18:55:54] 2026-03-10 17:55:51,889 | INFO     | traces error code: 0
[2026-03-10 18:55:54] 2026-03-10 17:55:51,889 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-10 18:55:54] 2026-03-10 17:55:54,016 | INFO     | PID=1658624 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-10 18:55:54] 2026-03-10 17:55:54,016 | INFO     | found 0 job(s) in 20 queues
[2026-03-10 18:55:54] 2026-03-10 17:55:54,016 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-10 18:55:54] 2026-03-10 17:55:54,016 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-10 18:55:54] 2026-03-10 17:55:54,016 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-10 18:55:54] 2026-03-10 17:55:54,016 | INFO     | [monitor] control thread has ended
[2026-03-10 18:55:54] 2026-03-10 17:55:54,079 [wrapper] ==== pilot stdout END ====
[2026-03-10 18:55:54] 2026-03-10 17:55:54,083 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-10 18:55:54] 2026-03-10 17:55:54,087 [wrapper] pilotpid: 1658624
[2026-03-10 18:55:54] 2026-03-10 17:55:54,091 [wrapper] Pilot exit status: 0
[2026-03-10 18:55:54] 2026-03-10 17:55:54,102 [wrapper] pandaids: 7041592384
[2026-03-10 18:55:54] 2026-03-10 17:55:54,122 [wrapper] cleanup supervisor_pilot 1668584 1658625
[2026-03-10 18:55:54] 2026-03-10 17:55:54,126 [wrapper] Test setup, not cleaning
[2026-03-10 18:55:54] 2026-03-10 17:55:54,129 [wrapper] apfmon messages muted
[2026-03-10 18:55:54] 2026-03-10 17:55:54,133 [wrapper] ==== wrapper stdout END ====
[2026-03-10 18:55:54] 2026-03-10 17:55:54,137 [wrapper] ==== wrapper stderr END ====
[2026-03-10 18:55:54]  *** Error codes and diagnostics ***
[2026-03-10 18:55:54]     "exeErrorCode": 0,
[2026-03-10 18:55:54]     "exeErrorDiag": "",
[2026-03-10 18:55:54]     "pilotErrorCode": 0,
[2026-03-10 18:55:54]     "pilotErrorDiag": "",
[2026-03-10 18:55:54]  *** Listing of results directory ***
[2026-03-10 18:55:54] total 610344
[2026-03-10 18:55:54] -rw-r--r-- 1 boinc boinc    584627 Mar 10 03:23 pilot3.tar.gz
[2026-03-10 18:55:54] -rw-r--r-- 1 boinc boinc      5111 Mar 10 03:24 queuedata.json
[2026-03-10 18:55:54] -rwx------ 1 boinc boinc     36322 Mar 10 03:24 runpilot2-wrapper.sh
[2026-03-10 18:55:54] -rw-r--r-- 1 boinc boinc       100 Mar 10 17:50 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-10 18:55:54] -rwxr-xr-x 1 boinc boinc      7986 Mar 10 17:50 run_atlas
[2026-03-10 18:55:54] -rw-r--r-- 1 boinc boinc       105 Mar 10 17:50 job.xml
[2026-03-10 18:55:54] -rw-r--r-- 2 boinc boinc 438001519 Mar 10 17:50 EVNT.46701403._000757.pool.root.1
[2026-03-10 18:55:54] -rw-r--r-- 2 boinc boinc    597951 Mar 10 17:50 input.tar.gz
[2026-03-10 18:55:54] -rw-r--r-- 2 boinc boinc     15845 Mar 10 17:50 start_atlas.sh
[2026-03-10 18:55:54] drwxrwx--x 2 boinc boinc      4096 Mar 10 17:50 shared
[2026-03-10 18:55:54] -rw-r--r-- 1 boinc boinc         0 Mar 10 17:50 boinc_setup_complete
[2026-03-10 18:55:54] -rw-r--r-- 1 boinc boinc      6369 Mar 10 17:50 init_data.xml
[2026-03-10 18:55:54] -rw-r--r-- 1 boinc boinc         0 Mar 10 17:50 boinc_lockfile
[2026-03-10 18:55:54] -rw-r--r-- 1 boinc boinc      2563 Mar 10 17:50 pandaJob.out
[2026-03-10 18:55:54] -rw------- 1 boinc boinc   1006702 Mar 10 17:50 agis_schedconf.cvmfs.json
[2026-03-10 18:55:54] -rw------- 1 boinc boinc   1511578 Mar 10 17:50 agis_ddmendpoints.agis.ALL.json
[2026-03-10 18:55:54] -rw------- 1 boinc boinc       418 Mar 10 17:50 workernode_map.json
[2026-03-10 18:55:54] drwx------ 5 boinc boinc      4096 Mar 10 17:50 pilot3
[2026-03-10 18:55:54] -rw------- 1 boinc boinc        95 Mar 10 18:54 pilot_heartbeat.json
[2026-03-10 18:55:54] -rw------- 1 boinc boinc 181430261 Mar 10 18:55 HITS.48955006._037854.pool.root.1
[2026-03-10 18:55:54] -rw-r--r-- 1 boinc boinc       531 Mar 10 18:55 boinc_task_state.xml
[2026-03-10 18:55:54] -rw------- 1 boinc boinc      1020 Mar 10 18:55 memory_monitor_summary.json
[2026-03-10 18:55:54] -rw------- 1 boinc boinc    240163 Mar 10 18:55 log.48955006._037854.job.log.tgz.1
[2026-03-10 18:55:54] -rw------- 1 boinc boinc      6304 Mar 10 18:55 heartbeat.json
[2026-03-10 18:55:54] -rw-r--r-- 1 boinc boinc      8192 Mar 10 18:55 boinc_mmap_file
[2026-03-10 18:55:54] -rw-r--r-- 1 boinc boinc        27 Mar 10 18:55 wrapper_checkpoint.txt
[2026-03-10 18:55:54] -rw------- 1 boinc boinc       747 Mar 10 18:55 pilotlog.txt
[2026-03-10 18:55:54] -rw------- 1 boinc boinc    581670 Mar 10 18:55 log.48955006._037854.job.log.1
[2026-03-10 18:55:54] -rw------- 1 boinc boinc       357 Mar 10 18:55 output.list
[2026-03-10 18:55:54] -rw-r--r-- 1 boinc boinc       620 Mar 10 18:55 runtime_log
[2026-03-10 18:55:54] -rw------- 1 boinc boinc    839680 Mar 10 18:55 result.tar.gz
[2026-03-10 18:55:54] -rw------- 1 boinc boinc       657 Mar 10 18:55 vXfMDmbw1J9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmpaeLDm9e3Dzm.diag
[2026-03-10 18:55:54] -rw-r--r-- 1 boinc boinc      8896 Mar 10 18:55 runtime_log.err
[2026-03-10 18:55:54] -rw-r--r-- 1 boinc boinc     10504 Mar 10 18:55 stderr.txt
[2026-03-10 18:55:54] HITS file was successfully produced:
[2026-03-10 18:55:54] -rw------- 1 boinc boinc 181430261 Mar 10 18:55 shared/HITS.pool.root.1
[2026-03-10 18:55:54]  *** Contents of shared directory: ***
[2026-03-10 18:55:54] total 606340
[2026-03-10 18:55:54] -rw-r--r-- 2 boinc boinc 438001519 Mar 10 17:50 ATLAS.root_0
[2026-03-10 18:55:54] -rw-r--r-- 2 boinc boinc    597951 Mar 10 17:50 input.tar.gz
[2026-03-10 18:55:54] -rw-r--r-- 2 boinc boinc     15845 Mar 10 17:50 start_atlas.sh
[2026-03-10 18:55:54] -rw------- 1 boinc boinc 181430261 Mar 10 18:55 HITS.pool.root.1
[2026-03-10 18:55:54] -rw------- 1 boinc boinc    839680 Mar 10 18:55 result.tar.gz
18:55:55 (1654519): run_atlas exited; CPU time 14359.626737
18:55:55 (1654519): called boinc_finish(0)

</stderr_txt>
]]>

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