Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
14:53:52 (600837): wrapper (7.7.26015): starting
14:53:52 (600837): wrapper: running run_atlas (--nthreads 4)
[2026-03-11 14:53:52] Arguments: --nthreads 4
[2026-03-11 14:53:52] Threads: 4
[2026-03-11 14:53:52] Checking for CVMFS
[2026-03-11 14:53:52] No cvmfs_config command found, will try listing directly
[2026-03-11 14:53:52] CVMFS is ok
[2026-03-11 14:53:52] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-11 14:53:52] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-11 14:53:52] Further information can be found at the LHC@home message board.
[2026-03-11 14:53:52] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-11 14:53:52] Checking for apptainer binary...
[2026-03-11 14:53:52] which: no apptainer in ((null))
[2026-03-11 14:53:52] apptainer is not installed, using version from CVMFS
[2026-03-11 14:53:52] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-11 14:53:52] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot36/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut05.grid.cesnet.cz
[2026-03-11 14:53:52] apptainer works
[2026-03-11 14:53:52] Set ATHENA_PROC_NUMBER=4
[2026-03-11 14:53:52] Set ATHENA_CORE_NUMBER=4
[2026-03-11 14:53:52] Starting ATLAS job with PandaID=7041363839
[2026-03-11 14:53:52] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot36/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
17:43:36 (889373): wrapper (7.7.26015): starting
17:43:36 (889373): wrapper: running run_atlas (--nthreads 4)
[2026-03-11 17:43:36] Arguments: --nthreads 4
[2026-03-11 17:43:36] Threads: 4
[2026-03-11 17:43:36] This job has been restarted, cleaning up previous attempt
[2026-03-11 17:43:36] Checking for CVMFS
[2026-03-11 17:43:36] No cvmfs_config command found, will try listing directly
[2026-03-11 17:43:36] CVMFS is ok
[2026-03-11 17:43:36] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-11 17:43:36] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-11 17:43:36] Further information can be found at the LHC@home message board.
[2026-03-11 17:43:36] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-11 17:43:36] Checking for apptainer binary...
[2026-03-11 17:43:36] which: no apptainer in ((null))
[2026-03-11 17:43:36] apptainer is not installed, using version from CVMFS
[2026-03-11 17:43:36] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-11 17:43:36] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot36/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut05.grid.cesnet.cz
[2026-03-11 17:43:36] apptainer works
[2026-03-11 17:43:36] Set ATHENA_PROC_NUMBER=4
[2026-03-11 17:43:36] Set ATHENA_CORE_NUMBER=4
[2026-03-11 17:43:36] Starting ATLAS job with PandaID=7041363839
[2026-03-11 17:43:36] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot36/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-11 20:47:38]  *** The last 200 lines of the pilot log: ***
[2026-03-11 20:47:38] 2026-03-11 19:39:43,342 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_817368/.job.ad'
[2026-03-11 20:47:38] 2026-03-11 19:39:43,342 | INFO     | total number of processed events: 400 (read)
[2026-03-11 20:47:38] 2026-03-11 19:39:43,352 | INFO     | using path: /var/lib/boinc/var/slot36/slots/0/PanDA_Pilot-7041363839/memory_monitor_summary.json (trf name=prmon)
[2026-03-11 20:47:38] 2026-03-11 19:39:43,353 | INFO     | extracted standard info from prmon json
[2026-03-11 20:47:38] 2026-03-11 19:39:43,353 | INFO     | extracted standard memory fields from prmon json
[2026-03-11 20:47:38] 2026-03-11 19:39:43,353 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-11 20:47:38] 2026-03-11 19:39:43,354 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-11 20:47:38] 2026-03-11 19:39:43,354 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-11 20:47:38] 2026-03-11 19:39:43,357 | INFO     | fitting pss+swap vs Time
[2026-03-11 20:47:38] 2026-03-11 19:39:43,357 | INFO     | sum of square deviations: 1605470102.0
[2026-03-11 20:47:38] 2026-03-11 19:39:43,358 | INFO     | sum of deviations: 26901259067.0
[2026-03-11 20:47:38] 2026-03-11 19:39:43,358 | INFO     | mean x: 1773252694.0
[2026-03-11 20:47:38] 2026-03-11 19:39:43,358 | INFO     | mean y: 2312546.8265895955
[2026-03-11 20:47:38] 2026-03-11 19:39:43,358 | INFO     | intersect: -29710311844.698627
[2026-03-11 20:47:38] 2026-03-11 19:39:43,359 | INFO     | chi2: 1.411150238323363
[2026-03-11 20:47:38] 2026-03-11 19:39:43,359 | INFO     | sum of square deviations: 1470248962.0
[2026-03-11 20:47:38] 2026-03-11 19:39:43,360 | INFO     | sum of deviations: 25985548020.500004
[2026-03-11 20:47:38] 2026-03-11 19:39:43,360 | INFO     | mean x: 1773252541.5
[2026-03-11 20:47:38] 2026-03-11 19:39:43,360 | INFO     | mean y: 2311514.2083333335
[2026-03-11 20:47:38] 2026-03-11 19:39:43,360 | INFO     | intersect: -31338597583.89442
[2026-03-11 20:47:38] 2026-03-11 19:39:43,360 | INFO     | chi2: 1.4119394573165869
[2026-03-11 20:47:38] 2026-03-11 19:39:43,361 | INFO     | current chi2=1.4119394573165869 (change=-0.05592735428097484 %)
[2026-03-11 20:47:38] 2026-03-11 19:39:43,361 | INFO     | right removable region: 167
[2026-03-11 20:47:38] 2026-03-11 19:39:43,361 | INFO     | sum of square deviations: 1470248962.0
[2026-03-11 20:47:38] 2026-03-11 19:39:43,362 | INFO     | sum of deviations: 2712282497.4999995
[2026-03-11 20:47:38] 2026-03-11 19:39:43,362 | INFO     | mean x: 1773252846.5
[2026-03-11 20:47:38] 2026-03-11 19:39:43,362 | INFO     | mean y: 2339470.601190476
[2026-03-11 20:47:38] 2026-03-11 19:39:43,362 | INFO     | intersect: -3268917835.822266
[2026-03-11 20:47:38] 2026-03-11 19:39:43,362 | INFO     | chi2: 0.012679167917529061
[2026-03-11 20:47:38] 2026-03-11 19:39:43,362 | INFO     | current chi2=0.012679167917529061 (change=99.10150120283481 %)
[2026-03-11 20:47:38] 2026-03-11 19:39:43,363 | INFO     | sum of square deviations: 1342841922.0
[2026-03-11 20:47:38] 2026-03-11 19:39:43,363 | INFO     | sum of deviations: 449144280.99999994
[2026-03-11 20:47:38] 2026-03-11 19:39:43,363 | INFO     | mean x: 1773252999.0
[2026-03-11 20:47:38] 2026-03-11 19:39:43,364 | INFO     | mean y: 2342148.2147239265
[2026-03-11 20:47:38] 2026-03-11 19:39:43,364 | INFO     | intersect: -590762989.6415163
[2026-03-11 20:47:38] 2026-03-11 19:39:43,364 | INFO     | chi2: 0.0022298453960188456
[2026-03-11 20:47:38] 2026-03-11 19:39:43,364 | INFO     | current chi2=0.0022298453960188456 (change=82.41331441840072 %)
[2026-03-11 20:47:38] 2026-03-11 19:39:43,364 | INFO     | sum of square deviations: 1223016419.5
[2026-03-11 20:47:38] 2026-03-11 19:39:43,365 | INFO     | sum of deviations: 179070898.49999994
[2026-03-11 20:47:38] 2026-03-11 19:39:43,365 | INFO     | mean x: 1773253151.5
[2026-03-11 20:47:38] 2026-03-11 19:39:43,365 | INFO     | mean y: 2342490.740506329
[2026-03-11 20:47:38] 2026-03-11 19:39:43,365 | INFO     | intersect: -257292645.83180484
[2026-03-11 20:47:38] 2026-03-11 19:39:43,366 | INFO     | chi2: 0.002135140935880037
[2026-03-11 20:47:38] 2026-03-11 19:39:43,366 | INFO     | current chi2=0.002135140935880037 (change=4.247131227478531 %)
[2026-03-11 20:47:38] 2026-03-11 19:39:43,366 | INFO     | left removable region: 30
[2026-03-11 20:47:38] 2026-03-11 19:39:43,366 | INFO     | sum of square deviations: 797291228.0
[2026-03-11 20:47:38] 2026-03-11 19:39:43,367 | INFO     | sum of deviations: 409087349.9999999
[2026-03-11 20:47:38] 2026-03-11 19:39:43,367 | INFO     | mean x: 1773253426.0
[2026-03-11 20:47:38] 2026-03-11 19:39:43,367 | INFO     | mean y: 2341721.8540145988
[2026-03-11 20:47:38] 2026-03-11 19:39:43,367 | INFO     | intersect: -907508430.0665842
[2026-03-11 20:47:38] 2026-03-11 19:39:43,367 | INFO     | chi2: 0.001954935131900196
[2026-03-11 20:47:38] 2026-03-11 19:39:43,367 | INFO     | current memory leak: 0.51 B/s (using 137 data points, chi2=0.00)
[2026-03-11 20:47:38] 2026-03-11 19:39:43,368 | INFO     | could have reported an average CPU frequency of 2538 MHz (9 samples)
[2026-03-11 20:47:38] 2026-03-11 19:39:43,368 | INFO     | ..............................
[2026-03-11 20:47:38] 2026-03-11 19:39:43,368 | INFO     | . Timing measurements:
[2026-03-11 20:47:38] 2026-03-11 19:39:43,368 | INFO     | . get job = 0 s
[2026-03-11 20:47:38] 2026-03-11 19:39:43,368 | INFO     | . initial setup = 1 s
[2026-03-11 20:47:38] 2026-03-11 19:39:43,368 | INFO     | . payload setup = 6 s
[2026-03-11 20:47:38] 2026-03-11 19:39:43,368 | INFO     | . stage-in = 0 s
[2026-03-11 20:47:38] 2026-03-11 19:39:43,369 | INFO     | . payload execution = 10530 s
[2026-03-11 20:47:38] 2026-03-11 19:39:43,369 | INFO     | . stage-out = 1 s
[2026-03-11 20:47:38] 2026-03-11 19:39:43,369 | INFO     | . log creation = 0 s
[2026-03-11 20:47:38] 2026-03-11 19:39:43,369 | INFO     | ..............................
[2026-03-11 20:47:38] 2026-03-11 19:39:43,453 | INFO     | 
[2026-03-11 20:47:38] 2026-03-11 19:39:43,453 | INFO     | job summary report
[2026-03-11 20:47:38] 2026-03-11 19:39:43,454 | INFO     | --------------------------------------------------
[2026-03-11 20:47:38] 2026-03-11 19:39:43,454 | INFO     | PanDA job id: 7041363839
[2026-03-11 20:47:38] 2026-03-11 19:39:43,454 | INFO     | task id: 48955010
[2026-03-11 20:47:38] 2026-03-11 19:39:43,454 | INFO     | errors: (none)
[2026-03-11 20:47:38] 2026-03-11 19:39:43,454 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-11 20:47:38] 2026-03-11 19:39:43,454 | INFO     | pilot state: finished 
[2026-03-11 20:47:38] 2026-03-11 19:39:43,454 | INFO     | transexitcode: 0
[2026-03-11 20:47:38] 2026-03-11 19:39:43,454 | INFO     | exeerrorcode: 0
[2026-03-11 20:47:38] 2026-03-11 19:39:43,454 | INFO     | exeerrordiag: 
[2026-03-11 20:47:38] 2026-03-11 19:39:43,454 | INFO     | exitcode: 0
[2026-03-11 20:47:38] 2026-03-11 19:39:43,454 | INFO     | exitmsg: OK
[2026-03-11 20:47:38] 2026-03-11 19:39:43,454 | INFO     | cpuconsumptiontime: 38595 s
[2026-03-11 20:47:38] 2026-03-11 19:39:43,454 | INFO     | nevents: 400
[2026-03-11 20:47:38] 2026-03-11 19:39:43,455 | INFO     | neventsw: 0
[2026-03-11 20:47:38] 2026-03-11 19:39:43,455 | INFO     | pid: 908458
[2026-03-11 20:47:38] 2026-03-11 19:39:43,455 | INFO     | pgrp: 908458
[2026-03-11 20:47:38] 2026-03-11 19:39:43,455 | INFO     | corecount: 4
[2026-03-11 20:47:38] 2026-03-11 19:39:43,455 | INFO     | event service: False
[2026-03-11 20:47:38] 2026-03-11 19:39:43,455 | INFO     | sizes: {0: 2279757, 1: 2280218, 11: 2280218, 10541: 2309476, 10543: 2318496, 10545: 2318552, 10546: 2318938}
[2026-03-11 20:47:38] 2026-03-11 19:39:43,455 | INFO     | --------------------------------------------------
[2026-03-11 20:47:38] 2026-03-11 19:39:43,455 | INFO     | 
[2026-03-11 20:47:38] 2026-03-11 19:39:43,455 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot36/slots/0
[2026-03-11 20:47:38] 2026-03-11 19:39:43,476 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-11 20:47:38] 2026-03-11 19:39:43,477 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-11 20:47:38] 2026-03-11 19:39:43,477 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-11 20:47:38] 2026-03-11 19:39:43,477 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-11 20:47:38] 2026-03-11 19:39:43,477 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-11 20:47:38] 2026-03-11 19:39:43,477 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-11 20:47:38] 2026-03-11 19:39:43,477 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-11 20:47:38] 2026-03-11 19:39:43,477 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-11 20:47:38] 2026-03-11 19:39:43,478 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-11 20:47:38] 2026-03-11 19:39:43,478 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-11 20:47:38] 2026-03-11 19:39:43,478 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-11 20:47:38] 2026-03-11 19:39:43,478 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-11 20:47:38] 2026-03-11 19:39:43,478 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-11 20:47:38] 2026-03-11 19:39:43,478 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-11 20:47:38] 2026-03-11 19:39:43,478 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-11 20:47:38] 2026-03-11 19:39:43,478 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-11 20:47:38] 2026-03-11 19:39:43,478 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-11 20:47:38] 2026-03-11 19:39:43,478 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-11 20:47:38] 2026-03-11 19:39:43,478 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-11 20:47:38] 2026-03-11 19:39:43,478 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-11 20:47:38] 2026-03-11 19:39:43,479 | INFO     | job 7041363839 has completed (purged errors)
[2026-03-11 20:47:38] 2026-03-11 19:39:43,479 | INFO     | overall cleanup function is called
[2026-03-11 20:47:38] 2026-03-11 19:39:44,487 | INFO     | --- collectZombieJob: --- 10, [908458]
[2026-03-11 20:47:38] 2026-03-11 19:39:44,487 | INFO     | zombie collector waiting for pid 908458
[2026-03-11 20:47:38] 2026-03-11 19:39:44,488 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-11 20:47:38] 2026-03-11 19:39:44,488 | INFO     | collected zombie processes
[2026-03-11 20:47:38] 2026-03-11 19:39:44,488 | INFO     | will attempt to kill all subprocesses of pid=908458
[2026-03-11 20:47:38] 2026-03-11 19:39:44,858 | INFO     | process IDs to be killed: [908458] (in reverse order)
[2026-03-11 20:47:38] 2026-03-11 19:39:44,976 | WARNING  | found no corresponding commands to process id(s)
[2026-03-11 20:47:38] 2026-03-11 19:39:44,976 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-11 20:47:38] 2026-03-11 19:39:44,988 | INFO     | did not find any defunct processes belonging to 908458
[2026-03-11 20:47:38] 2026-03-11 19:39:45,000 | INFO     | did not find any defunct processes belonging to 908458
[2026-03-11 20:47:38] 2026-03-11 19:39:45,000 | INFO     | ready for new job
[2026-03-11 20:47:38] 2026-03-11 19:39:45,000 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-11 20:47:38] 2026-03-11 19:39:45,002 | INFO     | **************************************
[2026-03-11 20:47:38] 2026-03-11 19:39:45,002 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-11 20:47:38] 2026-03-11 19:39:45,002 | INFO     | **************************************
[2026-03-11 20:47:38] 2026-03-11 19:39:45,002 | INFO     | 
[2026-03-11 20:47:38] 2026-03-11 19:39:45,006 | INFO     | architecture information:
[2026-03-11 20:47:38] 2026-03-11 19:39:45,007 | INFO     | executing command: cat /etc/os-release
[2026-03-11 20:47:38] 2026-03-11 19:39:45,021 | INFO     | cat /etc/os-release:
[2026-03-11 20:47:38] NAME="CentOS Linux"
[2026-03-11 20:47:38] VERSION="7 (Core)"
[2026-03-11 20:47:38] ID="centos"
[2026-03-11 20:47:38] ID_LIKE="rhel fedora"
[2026-03-11 20:47:38] VERSION_ID="7"
[2026-03-11 20:47:38] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-11 20:47:38] ANSI_COLOR="0;31"
[2026-03-11 20:47:38] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-11 20:47:38] HOME_URL="https://www.centos.org/"
[2026-03-11 20:47:38] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-11 20:47:38] 
[2026-03-11 20:47:38] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-11 20:47:38] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-11 20:47:38] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-11 20:47:38] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-11 20:47:38] 
[2026-03-11 20:47:38] 2026-03-11 19:39:45,022 | INFO     | **************************************
[2026-03-11 20:47:38] 2026-03-11 19:39:45,525 | INFO     | executing command: df -mP /var/lib/boinc/var/slot36/slots/0
[2026-03-11 20:47:38] 2026-03-11 19:39:45,540 | INFO     | sufficient remaining disk space (22120759296 B)
[2026-03-11 20:47:38] 2026-03-11 19:39:45,541 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-11 20:47:38] 2026-03-11 19:39:45,541 | INFO     | current server update state: UPDATING_FINAL
[2026-03-11 20:47:38] 2026-03-11 19:39:45,541 | INFO     | update_server=False
[2026-03-11 20:47:38] 2026-03-11 19:39:45,541 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-11 20:47:38] 2026-03-11 19:39:45,618 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-11 20:47:38] 2026-03-11 19:39:45,819 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-03-11 20:47:38] 2026-03-11 19:39:45,820 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-03-11 20:47:38] 2026-03-11 19:39:45,820 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-11 20:47:38] 2026-03-11 19:39:45,820 | INFO     | will abort loop
[2026-03-11 20:47:38] 2026-03-11 19:39:46,179 | INFO     | all payload control threads have been joined
[2026-03-11 20:47:38] 2026-03-11 19:39:46,306 | INFO     | all data control threads have been joined
[2026-03-11 20:47:38] 2026-03-11 19:39:46,547 | INFO     | [job] retrieve thread has finished
[2026-03-11 20:47:38] 2026-03-11 19:39:46,677 | INFO     | [job] create_data_payload thread has finished
[2026-03-11 20:47:38] 2026-03-11 19:39:46,736 | INFO     | all job control threads have been joined
[2026-03-11 20:47:38] 2026-03-11 19:39:46,825 | INFO     | [job] job monitor thread has finished
[2026-03-11 20:47:38] 2026-03-11 19:39:47,173 | INFO     | [payload] validate_pre thread has finished
[2026-03-11 20:47:38] 2026-03-11 19:39:47,185 | INFO     | [payload] control thread has finished
[2026-03-11 20:47:38] 2026-03-11 19:39:47,262 | INFO     | [data] copytool_in thread has finished
[2026-03-11 20:47:38] 2026-03-11 19:39:47,310 | INFO     | [data] control thread has finished
[2026-03-11 20:47:38] 2026-03-11 19:39:47,618 | INFO     | [payload] failed_post thread has finished
[2026-03-11 20:47:38] 2026-03-11 19:39:47,624 | INFO     | [data] copytool_out thread has finished
[2026-03-11 20:47:38] 2026-03-11 19:39:47,627 | INFO     | [payload] validate_post thread has finished
[2026-03-11 20:47:38] 2026-03-11 19:39:47,741 | INFO     | [job] control thread has finished
[2026-03-11 20:47:38] 2026-03-11 19:39:47,763 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-11 20:47:38] 2026-03-11 19:39:47,900 | INFO     | [job] validate thread has finished
[2026-03-11 20:47:38] 2026-03-11 19:39:47,987 | INFO     | [payload] execute_payloads thread has finished
[2026-03-11 20:47:38] 2026-03-11 19:39:48,462 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-11 20:47:38] 2026-03-11 19:39:48,569 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-11 20:47:38] 2026-03-11 19:39:49,468 | INFO     | [job] queue monitor thread has finished
[2026-03-11 20:47:38] 2026-03-11 19:39:52,575 | INFO     | [data] queue_monitor thread has finished
[2026-03-11 20:47:38] 2026-03-11 19:40:03,345 | INFO     | [monitor] cgroup control has ended
[2026-03-11 20:47:38] 2026-03-11 19:40:05,207 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22887613347648)>', '<ExcThread(monitor, started 22887378728704)>']
[2026-03-11 20:47:38] 2026-03-11 19:40:10,214 | INFO     | all workflow threads have been joined
[2026-03-11 20:47:38] 2026-03-11 19:40:10,215 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-11 20:47:38] 2026-03-11 19:40:10,215 | INFO     | traces error code: 0
[2026-03-11 20:47:38] 2026-03-11 19:40:10,215 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-11 20:47:38] 2026-03-11 19:40:15,457 | INFO     | PID=900667 has CPU usage=6.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-11 20:47:38] 2026-03-11 19:40:15,457 | INFO     | .. there are 7 such processes running
[2026-03-11 20:47:38] 2026-03-11 19:40:15,458 | INFO     | found 0 job(s) in 20 queues
[2026-03-11 20:47:38] 2026-03-11 19:40:15,458 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-11 20:47:38] 2026-03-11 19:40:15,458 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-11 20:47:38] 2026-03-11 19:40:15,458 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-11 20:47:38] 2026-03-11 19:40:15,458 | INFO     | [monitor] control thread has ended
[2026-03-11 20:47:38] 2026-03-11 19:40:15,620 [wrapper] ==== pilot stdout END ====
[2026-03-11 20:47:38] 2026-03-11 19:40:15,622 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-11 20:47:38] 2026-03-11 19:40:15,625 [wrapper] pilotpid: 900667
[2026-03-11 20:47:38] 2026-03-11 19:40:15,627 [wrapper] Pilot exit status: 0
[2026-03-11 20:47:38] 2026-03-11 19:40:15,636 [wrapper] pandaids: 7041363839 7041363839
[2026-03-11 20:47:38] 2026-03-11 19:40:15,709 [wrapper] cleanup supervisor_pilot 1031254 900669
[2026-03-11 20:47:38] 2026-03-11 19:40:15,712 [wrapper] Test setup, not cleaning
[2026-03-11 20:47:38] 2026-03-11 19:40:15,715 [wrapper] apfmon messages muted
[2026-03-11 20:47:38] 2026-03-11 19:40:15,718 [wrapper] ==== wrapper stdout END ====
[2026-03-11 20:47:38] 2026-03-11 19:40:15,720 [wrapper] ==== wrapper stderr END ====
[2026-03-11 20:47:38]  *** Error codes and diagnostics ***
[2026-03-11 20:47:38]     "exeErrorCode": 0,
[2026-03-11 20:47:38]     "exeErrorDiag": "",
[2026-03-11 20:47:38]     "pilotErrorCode": 0,
[2026-03-11 20:47:38]     "pilotErrorDiag": "",
[2026-03-11 20:47:38]  *** Listing of results directory ***
[2026-03-11 20:47:38] total 1034736
[2026-03-11 20:47:38] drwx------. 5 boinc boinc      4096 Feb  2 16:00 pilot3
[2026-03-11 20:47:38] -rw-r--r--. 1 boinc boinc    584627 Mar  9 20:33 pilot3.tar.gz
[2026-03-11 20:47:38] -rwx------. 1 boinc boinc     36322 Mar  9 20:33 runpilot2-wrapper.sh
[2026-03-11 20:47:38] -rw-r--r--. 1 boinc boinc      5111 Mar  9 20:34 queuedata.json
[2026-03-11 20:47:38] -rw-r--r--. 1 boinc boinc       100 Mar 11 14:53 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-11 20:47:38] -rwxr-xr-x. 1 boinc boinc      7986 Mar 11 14:53 run_atlas
[2026-03-11 20:47:38] -rw-r--r--. 1 boinc boinc       105 Mar 11 14:53 job.xml
[2026-03-11 20:47:38] -rw-r--r--. 3 boinc boinc 438050369 Mar 11 14:53 EVNT.46701403._001416.pool.root.1
[2026-03-11 20:47:38] -rw-r--r--. 3 boinc boinc 438050369 Mar 11 14:53 ATLAS.root_0
[2026-03-11 20:47:38] -rw-r--r--. 2 boinc boinc     15845 Mar 11 14:53 start_atlas.sh
[2026-03-11 20:47:38] drwxrwx--x. 2 boinc boinc      4096 Mar 11 14:53 shared
[2026-03-11 20:47:38] -rw-r--r--. 2 boinc boinc    597953 Mar 11 14:53 input.tar.gz
[2026-03-11 20:47:38] -rw-r--r--. 1 boinc boinc         0 Mar 11 14:53 boinc_lockfile
[2026-03-11 20:47:38] -rw-r--r--. 1 boinc boinc      6570 Mar 11 17:43 init_data.xml
[2026-03-11 20:47:38] -rw-r--r--. 1 boinc boinc      2563 Mar 11 17:43 pandaJob.out
[2026-03-11 20:47:38] -rw-------. 1 boinc boinc   1006251 Mar 11 17:43 agis_schedconf.cvmfs.json
[2026-03-11 20:47:38] -rw-------. 1 boinc boinc       448 Mar 11 17:43 workernode_map.json
[2026-03-11 20:47:38] -rw-------. 1 boinc boinc 175797595 Mar 11 20:39 HITS.48955010._020908.pool.root.1
[2026-03-11 20:47:38] -rw-r--r--. 1 boinc boinc       530 Mar 11 20:39 boinc_task_state.xml
[2026-03-11 20:47:38] -rw-------. 1 boinc boinc      1033 Mar 11 20:39 memory_monitor_summary.json
[2026-03-11 20:47:38] -rw-------. 1 boinc boinc   1511578 Mar 11 20:39 agis_ddmendpoints.agis.ALL.json
[2026-03-11 20:47:38] -rw-------. 1 boinc boinc    379676 Mar 11 20:39 log.48955010._020908.job.log.tgz.1
[2026-03-11 20:47:38] -rw-------. 1 boinc boinc      6401 Mar 11 20:39 heartbeat.json
[2026-03-11 20:47:38] -rw-------. 1 boinc boinc        97 Mar 11 20:40 pilot_heartbeat.json
[2026-03-11 20:47:38] -rw-------. 1 boinc boinc       821 Mar 11 20:40 pilotlog.txt
[2026-03-11 20:47:38] -rw-------. 1 boinc boinc   1488661 Mar 11 20:40 log.48955010._020908.job.log.1
[2026-03-11 20:47:38] -rw-------. 1 boinc boinc       357 Mar 11 20:40 output.list
[2026-03-11 20:47:38] -rw-r--r--. 1 boinc boinc       620 Mar 11 20:40 runtime_log
[2026-03-11 20:47:38] -rw-------. 1 boinc boinc   1884160 Mar 11 20:40 result.tar.gz
[2026-03-11 20:47:38] -rw-r--r--. 1 boinc boinc      9282 Mar 11 20:40 runtime_log.err
[2026-03-11 20:47:38] -rw-------. 1 boinc boinc       789 Mar 11 20:40 gVGMDmRXvJ9n9Rq4apOajLDm4fhM0noT9bVooX4SDmU0aLDmB0cw2n.diag
[2026-03-11 20:47:38] -rw-r--r--. 1 boinc boinc        27 Mar 11 20:47 wrapper_checkpoint.txt
[2026-03-11 20:47:38] -rw-r--r--. 1 boinc boinc      8192 Mar 11 20:47 boinc_mmap_file
[2026-03-11 20:47:38] -rw-r--r--. 1 boinc boinc     22834 Mar 11 20:47 stderr.txt
[2026-03-11 20:47:39] HITS file was successfully produced:
[2026-03-11 20:47:39] -rw-------. 1 boinc boinc 175797595 Mar 11 20:39 shared/HITS.pool.root.1
[2026-03-11 20:47:39]  *** Contents of shared directory: ***
[2026-03-11 20:47:39] total 601912
[2026-03-11 20:47:39] -rw-r--r--. 3 boinc boinc 438050369 Mar 11 14:53 ATLAS.root_0
[2026-03-11 20:47:39] -rw-r--r--. 2 boinc boinc     15845 Mar 11 14:53 start_atlas.sh
[2026-03-11 20:47:39] -rw-r--r--. 2 boinc boinc    597953 Mar 11 14:53 input.tar.gz
[2026-03-11 20:47:39] -rw-------. 1 boinc boinc 175797595 Mar 11 20:39 HITS.pool.root.1
[2026-03-11 20:47:39] -rw-------. 1 boinc boinc   1884160 Mar 11 20:40 result.tar.gz
20:47:40 (889373): run_atlas exited; CPU time 39045.588211
20:47:40 (889373): called boinc_finish(0)

</stderr_txt>
]]>

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