Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
19:24:57 (1694032): wrapper (7.7.26015): starting
19:24:57 (1694032): wrapper: running run_atlas (--nthreads 12)
[2026-03-09 19:24:58] Arguments: --nthreads 12
[2026-03-09 19:24:58] Threads: 12
[2026-03-09 19:24:58] Checking for CVMFS
[2026-03-09 19:24:58] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-09 19:24:59] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-09 19:24:59] Running cvmfs_config stat atlas.cern.ch
[2026-03-09 19:25:00] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-09 19:25:00] 2.13.3.0 8980 179029 341424 157095 1 59 30787412 32935937 22131 16776704 0 780614353 99.695 604861437 33156 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-03-09 19:25:00] CVMFS is ok
[2026-03-09 19:25:00] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-09 19:25:00] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-09 19:25:00] Further information can be found at the LHC@home message board.
[2026-03-09 19:25:00] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-09 19:25:00] Checking for apptainer binary...
[2026-03-09 19:25:00] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-09 19:25:00] Running /usr/bin/apptainer --version
[2026-03-09 19:25:00] apptainer version 1.4.5-2.el9
[2026-03-09 19:25:00] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-09 19:25:01] c-5-4.aglt2.org
[2026-03-09 19:25:01] apptainer works
[2026-03-09 19:25:01] Set ATHENA_PROC_NUMBER=12
[2026-03-09 19:25:01] Set ATHENA_CORE_NUMBER=12
[2026-03-09 19:25:01] Starting ATLAS job with PandaID=7041005770
[2026-03-09 19:25:01] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-10 04:46:57]  *** The last 200 lines of the pilot log: ***
[2026-03-10 04:46:58] 2026-03-10 05:40:07,564 | INFO     | extracted standard info from prmon json
[2026-03-10 04:46:58] 2026-03-10 05:40:07,565 | INFO     | extracted standard memory fields from prmon json
[2026-03-10 04:46:58] 2026-03-10 05:40:07,565 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-10 04:46:58] 2026-03-10 05:40:07,799 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-10 04:46:58] 2026-03-10 05:40:07,799 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-10 04:46:58] 2026-03-10 05:40:08,166 | INFO     | fitting pss+swap vs Time
[2026-03-10 04:46:58] 2026-03-10 05:40:08,166 | INFO     | sum of square deviations: 15329441217.90183
[2026-03-10 04:46:58] 2026-03-10 05:40:08,324 | INFO     | time since job start (22422s) is within the limit (349056.0s)
[2026-03-10 04:46:58] 2026-03-10 05:40:08,330 | INFO     | sum of deviations: -260244487485.84204
[2026-03-10 04:46:58] 2026-03-10 05:40:08,330 | INFO     | mean x: 1773110007.9836512
[2026-03-10 04:46:58] 2026-03-10 05:40:08,331 | INFO     | mean y: 2674544.3596730246
[2026-03-10 04:46:58] 2026-03-10 05:40:08,331 | INFO     | intersect: 30104365710.039425
[2026-03-10 04:46:58] 2026-03-10 05:40:08,331 | INFO     | chi2: 8.710470036838027
[2026-03-10 04:46:58] 2026-03-10 05:40:08,332 | INFO     | sum of square deviations: 14711510024.455896
[2026-03-10 04:46:58] 2026-03-10 05:40:08,603 | INFO     | monitor loop #1098: job 0:7041005770 is in state 'finished'
[2026-03-10 04:46:58] 2026-03-10 05:40:08,604 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-03-10 04:46:58] 2026-03-10 05:40:08,606 | INFO     | sum of deviations: -134104121244.1878
[2026-03-10 04:46:58] 2026-03-10 05:40:08,606 | INFO     | mean x: 1773109855.4889503
[2026-03-10 04:46:58] 2026-03-10 05:40:08,606 | INFO     | mean y: 2705675.453038674
[2026-03-10 04:46:58] 2026-03-10 05:40:08,607 | INFO     | intersect: 16165651467.181772
[2026-03-10 04:46:58] 2026-03-10 05:40:08,963 | INFO     | chi2: 4.977883891500683
[2026-03-10 04:46:58] 2026-03-10 05:40:08,964 | INFO     | current chi2=4.977883891500683 (change=42.85171901805087 %)
[2026-03-10 04:46:58] 2026-03-10 05:40:08,964 | INFO     | sum of square deviations: 14110285303.82083
[2026-03-10 04:46:58] 2026-03-10 05:40:09,290 | INFO     | sum of deviations: -55562285272.028076
[2026-03-10 04:46:58] 2026-03-10 05:40:09,291 | INFO     | mean x: 1773109702.977591
[2026-03-10 04:46:58] 2026-03-10 05:40:09,291 | INFO     | mean y: 2725497.2464985996
[2026-03-10 04:46:58] 2026-03-10 05:40:09,291 | INFO     | intersect: 6984726570.517841
[2026-03-10 04:46:58] 2026-03-10 05:40:09,291 | INFO     | chi2: 2.721528213107705
[2026-03-10 04:46:58] 2026-03-10 05:40:09,292 | INFO     | current chi2=2.721528213107705 (change=45.327607625511625 %)
[2026-03-10 04:46:58] 2026-03-10 05:40:09,292 | INFO     | sum of square deviations: 13525662497.591005
[2026-03-10 04:46:58] 2026-03-10 05:40:09,300 | INFO     | sum of deviations: -54238247277.045456
[2026-03-10 04:46:58] 2026-03-10 05:40:09,300 | INFO     | mean x: 1773109550.465909
[2026-03-10 04:46:58] 2026-03-10 05:40:09,300 | INFO     | mean y: 2725842.5795454546
[2026-03-10 04:46:58] 2026-03-10 05:40:09,300 | INFO     | intersect: 7112939798.057834
[2026-03-10 04:46:58] 2026-03-10 05:40:09,301 | INFO     | chi2: 2.7203412558620426
[2026-03-10 04:46:58] 2026-03-10 05:40:09,301 | INFO     | current chi2=2.7203412558620426 (change=0.04361363001660895 %)
[2026-03-10 04:46:58] 2026-03-10 05:40:09,301 | INFO     | right removable region: 351
[2026-03-10 04:46:58] 2026-03-10 05:40:09,305 | INFO     | sum of square deviations: 14711356730.497313
[2026-03-10 04:46:58] 2026-03-10 05:40:09,313 | INFO     | sum of deviations: -345589272219.02185
[2026-03-10 04:46:58] 2026-03-10 05:40:09,313 | INFO     | mean x: 1773110160.4972377
[2026-03-10 04:46:58] 2026-03-10 05:40:09,313 | INFO     | mean y: 2695522.4779005526
[2026-03-10 04:46:58] 2026-03-10 05:40:09,313 | INFO     | intersect: 41655403777.461464
[2026-03-10 04:46:58] 2026-03-10 05:40:09,314 | INFO     | chi2: 6.636928661938886
[2026-03-10 04:46:58] 2026-03-10 05:40:09,314 | INFO     | current chi2=6.636928661938886 (change=23.80516052669706 %)
[2026-03-10 04:46:58] 2026-03-10 05:40:09,314 | INFO     | left removable region: 10
[2026-03-10 04:46:58] 2026-03-10 05:40:09,315 | INFO     | sum of square deviations: 12296829931.988249
[2026-03-10 04:46:58] 2026-03-10 05:40:09,323 | INFO     | sum of deviations: -146670270412.62762
[2026-03-10 04:46:58] 2026-03-10 05:40:09,323 | INFO     | mean x: 1773109824.994135
[2026-03-10 04:46:58] 2026-03-10 05:40:09,324 | INFO     | mean y: 2750883.6862170086
[2026-03-10 04:46:58] 2026-03-10 05:40:09,324 | INFO     | intersect: 21151494010.291992
[2026-03-10 04:46:58] 2026-03-10 05:40:09,324 | INFO     | chi2: 0.43233423811583793
[2026-03-10 04:46:58] 2026-03-10 05:40:09,325 | INFO     | current memory leak: -11.93 B/s (using 341 data points, chi2=0.43)
[2026-03-10 04:46:58] 2026-03-10 05:40:09,329 | INFO     | could have reported an average CPU frequency of 2600 MHz (16 samples)
[2026-03-10 04:46:58] 2026-03-10 05:40:09,330 | INFO     | ..............................
[2026-03-10 04:46:58] 2026-03-10 05:40:09,330 | INFO     | . Timing measurements:
[2026-03-10 04:46:58] 2026-03-10 05:40:09,330 | INFO     | . get job = 0 s
[2026-03-10 04:46:58] 2026-03-10 05:40:09,330 | INFO     | . initial setup = 28 s
[2026-03-10 04:46:58] 2026-03-10 05:40:09,334 | INFO     | . payload setup = 25 s
[2026-03-10 04:46:58] 2026-03-10 05:40:09,334 | INFO     | . stage-in = 0 s
[2026-03-10 04:46:58] 2026-03-10 05:40:09,334 | INFO     | . payload execution = 22358 s
[2026-03-10 04:46:58] 2026-03-10 05:40:09,334 | INFO     | . stage-out = 11 s
[2026-03-10 04:46:58] 2026-03-10 05:40:09,334 | INFO     | . log creation = 1 s
[2026-03-10 04:46:58] 2026-03-10 05:40:09,334 | INFO     | ..............................
[2026-03-10 04:46:58] 2026-03-10 05:40:10,485 | INFO     | time since job start (22424s) is within the limit (349056.0s)
[2026-03-10 04:46:58] 2026-03-10 05:40:10,758 | INFO     | 
[2026-03-10 04:46:58] 2026-03-10 05:40:10,759 | INFO     | job summary report
[2026-03-10 04:46:58] 2026-03-10 05:40:10,759 | INFO     | --------------------------------------------------
[2026-03-10 04:46:58] 2026-03-10 05:40:10,759 | INFO     | PanDA job id: 7041005770
[2026-03-10 04:46:58] 2026-03-10 05:40:10,759 | INFO     | task id: 48955010
[2026-03-10 04:46:58] 2026-03-10 05:40:10,759 | INFO     | errors: (none)
[2026-03-10 04:46:58] 2026-03-10 05:40:10,759 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-10 04:46:58] 2026-03-10 05:40:10,759 | INFO     | pilot state: finished 
[2026-03-10 04:46:58] 2026-03-10 05:40:10,759 | INFO     | transexitcode: 0
[2026-03-10 04:46:58] 2026-03-10 05:40:10,759 | INFO     | exeerrorcode: 0
[2026-03-10 04:46:58] 2026-03-10 05:40:10,760 | INFO     | exeerrordiag: 
[2026-03-10 04:46:58] 2026-03-10 05:40:10,760 | INFO     | exitcode: 0
[2026-03-10 04:46:58] 2026-03-10 05:40:10,760 | INFO     | exitmsg: OK
[2026-03-10 04:46:58] 2026-03-10 05:40:10,760 | INFO     | cpuconsumptiontime: 44295 s
[2026-03-10 04:46:58] 2026-03-10 05:40:10,760 | INFO     | nevents: 400
[2026-03-10 04:46:58] 2026-03-10 05:40:10,760 | INFO     | neventsw: 0
[2026-03-10 04:46:58] 2026-03-10 05:40:10,760 | INFO     | pid: 1707187
[2026-03-10 04:46:58] 2026-03-10 05:40:10,760 | INFO     | pgrp: 1707187
[2026-03-10 04:46:58] 2026-03-10 05:40:10,760 | INFO     | corecount: 12
[2026-03-10 04:46:58] 2026-03-10 05:40:10,761 | INFO     | event service: False
[2026-03-10 04:46:58] 2026-03-10 05:40:10,761 | INFO     | sizes: {0: 2279087, 1: 2279772, 2: 2280233, 13: 2280233, 22390: 2313941, 22391: 2313940, 22404: 2323122, 22406: 2323178, 22411: 2323372}
[2026-03-10 04:46:58] 2026-03-10 05:40:10,761 | INFO     | --------------------------------------------------
[2026-03-10 04:46:58] 2026-03-10 05:40:10,761 | INFO     | 
[2026-03-10 04:46:58] 2026-03-10 05:40:10,761 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-03-10 04:46:58] 2026-03-10 05:40:11,265 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-10 04:46:58] 2026-03-10 05:40:11,265 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-10 04:46:58] 2026-03-10 05:40:11,265 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-10 04:46:58] 2026-03-10 05:40:11,265 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-10 04:46:58] 2026-03-10 05:40:11,265 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-10 04:46:58] 2026-03-10 05:40:11,266 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-10 04:46:58] 2026-03-10 05:40:11,266 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-10 04:46:58] 2026-03-10 05:40:11,266 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-10 04:46:58] 2026-03-10 05:40:11,266 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-10 04:46:58] 2026-03-10 05:40:11,266 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-10 04:46:58] 2026-03-10 05:40:11,266 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-10 04:46:58] 2026-03-10 05:40:11,266 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-10 04:46:58] 2026-03-10 05:40:11,266 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-10 04:46:58] 2026-03-10 05:40:11,266 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-10 04:46:58] 2026-03-10 05:40:11,266 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-10 04:46:58] 2026-03-10 05:40:11,267 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-10 04:46:58] 2026-03-10 05:40:11,267 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-10 04:46:58] 2026-03-10 05:40:11,267 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-10 04:46:58] 2026-03-10 05:40:11,267 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-10 04:46:58] 2026-03-10 05:40:11,267 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-10 04:46:58] 2026-03-10 05:40:11,267 | INFO     | job 7041005770 has completed (purged errors)
[2026-03-10 04:46:58] 2026-03-10 05:40:11,267 | INFO     | overall cleanup function is called
[2026-03-10 04:46:58] 2026-03-10 05:40:12,384 | INFO     | --- collectZombieJob: --- 10, [1707187]
[2026-03-10 04:46:58] 2026-03-10 05:40:12,385 | INFO     | zombie collector waiting for pid 1707187
[2026-03-10 04:46:58] 2026-03-10 05:40:12,385 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-10 04:46:58] 2026-03-10 05:40:12,385 | INFO     | collected zombie processes
[2026-03-10 04:46:58] 2026-03-10 05:40:12,385 | INFO     | will attempt to kill all subprocesses of pid=1707187
[2026-03-10 04:46:58] 2026-03-10 05:40:17,107 | INFO     | process IDs to be killed: [1707187] (in reverse order)
[2026-03-10 04:46:58] 2026-03-10 05:40:18,477 | WARNING  | found no corresponding commands to process id(s)
[2026-03-10 04:46:58] 2026-03-10 05:40:18,477 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-10 04:46:58] 2026-03-10 05:40:19,348 | INFO     | did not find any defunct processes belonging to 1707187
[2026-03-10 04:46:58] 2026-03-10 05:40:19,520 | INFO     | did not find any defunct processes belonging to 1707187
[2026-03-10 04:46:58] 2026-03-10 05:40:19,520 | INFO     | ready for new job
[2026-03-10 04:46:58] 2026-03-10 05:40:19,520 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-10 04:46:58] 2026-03-10 05:40:19,907 | INFO     | **************************************
[2026-03-10 04:46:58] 2026-03-10 05:40:19,908 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-10 04:46:58] 2026-03-10 05:40:19,908 | INFO     | **************************************
[2026-03-10 04:46:58] 2026-03-10 05:40:19,908 | INFO     | 
[2026-03-10 04:46:58] 2026-03-10 05:40:19,930 | INFO     | architecture information:
[2026-03-10 04:46:58] 2026-03-10 05:40:19,933 | INFO     | executing command: cat /etc/os-release
[2026-03-10 04:46:58] 2026-03-10 05:40:20,044 | INFO     | cat /etc/os-release:
[2026-03-10 04:46:58] NAME="CentOS Linux"
[2026-03-10 04:46:58] VERSION="7 (Core)"
[2026-03-10 04:46:58] ID="centos"
[2026-03-10 04:46:58] ID_LIKE="rhel fedora"
[2026-03-10 04:46:58] VERSION_ID="7"
[2026-03-10 04:46:58] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-10 04:46:58] ANSI_COLOR="0;31"
[2026-03-10 04:46:58] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-10 04:46:58] HOME_URL="https://www.centos.org/"
[2026-03-10 04:46:58] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-10 04:46:58] 
[2026-03-10 04:46:58] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-10 04:46:58] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-10 04:46:58] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-10 04:46:58] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-10 04:46:58] 
[2026-03-10 04:46:58] 2026-03-10 05:40:20,057 | INFO     | **************************************
[2026-03-10 04:46:58] 2026-03-10 05:40:20,560 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-03-10 04:46:58] 2026-03-10 05:40:20,740 | INFO     | sufficient remaining disk space (72901197824 B)
[2026-03-10 04:46:58] 2026-03-10 05:40:20,740 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-10 04:46:58] 2026-03-10 05:40:20,740 | INFO     | current server update state: UPDATING_FINAL
[2026-03-10 04:46:58] 2026-03-10 05:40:20,741 | INFO     | update_server=False
[2026-03-10 04:46:58] 2026-03-10 05:40:20,741 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-10 04:46:58] 2026-03-10 05:40:20,742 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-10 04:46:58] 2026-03-10 05:40:20,761 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-10 04:46:58] 2026-03-10 05:40:20,768 | INFO     | aborting loop
[2026-03-10 04:46:58] 2026-03-10 05:40:21,520 | INFO     | all data control threads have been joined
[2026-03-10 04:46:58] 2026-03-10 05:40:21,747 | INFO     | [job] retrieve thread has finished
[2026-03-10 04:46:58] 2026-03-10 05:40:21,748 | INFO     | [job] queue monitor thread has finished
[2026-03-10 04:46:58] 2026-03-10 05:40:21,782 | INFO     | [job] job monitor thread has finished
[2026-03-10 04:46:58] 2026-03-10 05:40:21,958 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-10 04:46:58] 2026-03-10 05:40:22,014 | INFO     | all job control threads have been joined
[2026-03-10 04:46:58] 2026-03-10 05:40:22,130 | INFO     | all payload control threads have been joined
[2026-03-10 04:46:58] 2026-03-10 05:40:22,164 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-10 04:46:58] 2026-03-10 05:40:22,251 | INFO     | [payload] failed_post thread has finished
[2026-03-10 04:46:58] 2026-03-10 05:40:22,497 | INFO     | [data] copytool_in thread has finished
[2026-03-10 04:46:58] 2026-03-10 05:40:22,498 | INFO     | [payload] execute_payloads thread has finished
[2026-03-10 04:46:58] 2026-03-10 05:40:22,504 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-10 04:46:58] 2026-03-10 05:40:22,505 | INFO     | [job] create_data_payload thread has finished
[2026-03-10 04:46:58] 2026-03-10 05:40:22,512 | INFO     | [job] validate thread has finished
[2026-03-10 04:46:58] 2026-03-10 05:40:22,518 | INFO     | [payload] validate_pre thread has finished
[2026-03-10 04:46:58] 2026-03-10 05:40:22,526 | INFO     | [data] control thread has finished
[2026-03-10 04:46:58] 2026-03-10 05:40:23,020 | INFO     | [job] control thread has finished
[2026-03-10 04:46:58] 2026-03-10 05:40:23,136 | INFO     | [payload] control thread has finished
[2026-03-10 04:46:58] 2026-03-10 05:40:23,226 | INFO     | [payload] validate_post thread has finished
[2026-03-10 04:46:58] 2026-03-10 05:40:23,966 | INFO     | [data] copytool_out thread has finished
[2026-03-10 04:46:58] 2026-03-10 05:40:26,175 | INFO     | [data] queue_monitor thread has finished
[2026-03-10 04:46:58] 2026-03-10 05:40:48,774 | INFO     | PID=1700191 has CPU usage=4.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-10 04:46:58] 2026-03-10 05:40:48,774 | INFO     | .. there are 36 such processes running
[2026-03-10 04:46:58] 2026-03-10 05:40:48,775 | INFO     | found 0 job(s) in 20 queues
[2026-03-10 04:46:58] 2026-03-10 05:40:48,775 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-10 04:46:58] 2026-03-10 05:40:48,775 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-10 04:46:58] 2026-03-10 05:40:57,850 [wrapper] supervise_pilot (15 min periods counter: 26)
[2026-03-10 04:46:58] 2026-03-10 05:41:10,392 | INFO     | [monitor] cgroup control has ended
[2026-03-10 04:46:58] 2026-03-10 05:41:12,518 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140476571699008)>', '<ExcThread(monitor, started 140475470169856)>']
[2026-03-10 04:46:58] 2026-03-10 05:41:13,155 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-10 04:46:58] 2026-03-10 05:41:13,156 | INFO     | [monitor] control thread has ended
[2026-03-10 04:46:58] 2026-03-10 05:41:17,549 | INFO     | all workflow threads have been joined
[2026-03-10 04:46:58] 2026-03-10 05:41:17,550 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-10 04:46:58] 2026-03-10 05:41:17,550 | INFO     | traces error code: 0
[2026-03-10 04:46:58] 2026-03-10 05:41:17,550 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-10 04:46:58] 2026-03-10 05:41:18,525 [wrapper] ==== pilot stdout END ====
[2026-03-10 04:46:58] 2026-03-10 05:41:18,618 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-10 04:46:58] 2026-03-10 05:41:18,653 [wrapper] pilotpid: 1700191
[2026-03-10 04:46:58] 2026-03-10 05:41:18,902 [wrapper] Pilot exit status: 0
[2026-03-10 04:46:58] 2026-03-10 05:41:19,107 [wrapper] pandaids: 7041005770
[2026-03-10 04:46:58] 2026-03-10 05:41:20,061 [wrapper] cleanup supervisor_pilot 2842663 1700192
[2026-03-10 04:46:58] 2026-03-10 05:41:20,111 [wrapper] Test setup, not cleaning
[2026-03-10 04:46:58] 2026-03-10 05:41:20,193 [wrapper] apfmon messages muted
[2026-03-10 04:46:58] 2026-03-10 05:41:20,252 [wrapper] ==== wrapper stdout END ====
[2026-03-10 04:46:58] 2026-03-10 05:41:20,274 [wrapper] ==== wrapper stderr END ====
[2026-03-10 04:46:58]  *** Error codes and diagnostics ***
[2026-03-10 04:46:58]     "exeErrorCode": 0,
[2026-03-10 04:46:58]     "exeErrorDiag": "",
[2026-03-10 04:46:58]     "pilotErrorCode": 0,
[2026-03-10 04:46:58]     "pilotErrorDiag": "",
[2026-03-10 04:46:58]  *** Listing of results directory ***
[2026-03-10 04:46:58] total 618480
[2026-03-10 04:46:58] -rw-r--r--. 1 boincer umatlas    584627 Mar  9 14:27 pilot3.tar.gz
[2026-03-10 04:46:58] -rwx------. 1 boincer umatlas     36322 Mar  9 14:30 runpilot2-wrapper.sh
[2026-03-10 04:46:58] -rw-r--r--. 1 boincer umatlas      5111 Mar  9 14:31 queuedata.json
[2026-03-10 04:46:58] -rw-r--r--. 1 boincer umatlas       100 Mar  9 19:24 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-10 04:46:58] -rwxr-xr-x. 1 boincer umatlas      7986 Mar  9 19:24 run_atlas
[2026-03-10 04:46:58] -rw-r--r--. 1 boincer umatlas       105 Mar  9 19:24 job.xml
[2026-03-10 04:46:58] -rw-r--r--. 2 boincer umatlas 438549625 Mar  9 19:24 EVNT.46701403._001404.pool.root.1
[2026-03-10 04:46:58] -rw-r--r--. 2 boincer umatlas     15845 Mar  9 19:24 start_atlas.sh
[2026-03-10 04:46:58] drwxrwx--x. 2 boincer umatlas      4096 Mar  9 19:24 shared
[2026-03-10 04:46:58] -rw-r--r--. 2 boincer umatlas    597953 Mar  9 19:24 input.tar.gz
[2026-03-10 04:46:58] -rw-r--r--. 1 boincer umatlas         0 Mar  9 19:24 boinc_lockfile
[2026-03-10 04:46:58] -rw-r--r--. 1 boincer umatlas      2562 Mar  9 19:25 pandaJob.out
[2026-03-10 04:46:58] -rw-------. 1 boincer umatlas        57 Mar  9 19:25 setup.sh.local
[2026-03-10 04:46:58] -rw-------. 1 boincer umatlas   1002738 Mar  9 19:25 agis_schedconf.cvmfs.json
[2026-03-10 04:46:58] -rw-------. 1 boincer umatlas       439 Mar  9 19:26 workernode_map.json
[2026-03-10 04:46:58] drwx------. 5 boincer umatlas      4096 Mar  9 19:26 pilot3
[2026-03-10 04:46:58] -rw-------. 1 boincer umatlas 184774881 Mar 10 01:31 HITS.48955010._020217.pool.root.1
[2026-03-10 04:46:58] -rw-r--r--. 1 boincer umatlas       532 Mar 10 01:32 boinc_task_state.xml
[2026-03-10 04:46:58] -rw-------. 1 boincer umatlas      1042 Mar 10 01:39 memory_monitor_summary.json
[2026-03-10 04:46:58] -rw-------. 1 boincer umatlas   1511578 Mar 10 01:39 agis_ddmendpoints.agis.ALL.json
[2026-03-10 04:46:58] -rw-------. 1 boincer umatlas    585034 Mar 10 01:40 log.48955010._020217.job.log.tgz.1
[2026-03-10 04:46:58] -rw-------. 1 boincer umatlas      6390 Mar 10 01:40 heartbeat.json
[2026-03-10 04:46:58] -rw-------. 1 boincer umatlas        95 Mar 10 01:40 pilot_heartbeat.json
[2026-03-10 04:46:58] -rw-------. 1 boincer umatlas      4820 Mar 10 01:41 pilotlog.txt
[2026-03-10 04:46:58] -rw-------. 1 boincer umatlas   2444567 Mar 10 01:41 log.48955010._020217.job.log.1
[2026-03-10 04:46:58] -rw-------. 1 boincer umatlas       357 Mar 10 01:41 output.list
[2026-03-10 04:46:58] -rw-r--r--. 1 boincer umatlas       620 Mar 10 01:41 runtime_log
[2026-03-10 04:46:58] -rw-------. 1 boincer umatlas   3051520 Mar 10 01:41 result.tar.gz
[2026-03-10 04:46:58] -rw-------. 1 boincer umatlas       654 Mar 10 01:41 yhgLDm9XuJ9n9Rq4apOajLDm4fhM0noT9bVooX4SDmPoaLDmyPDJXn.diag
[2026-03-10 04:46:58] -rw-r--r--. 1 boincer umatlas      9329 Mar 10 01:41 runtime_log.err
[2026-03-10 04:46:58] -rw-r--r--. 1 boincer umatlas        28 Mar 10 04:46 wrapper_checkpoint.txt
[2026-03-10 04:46:58] -rw-r--r--. 1 boincer umatlas      6658 Mar 10 04:46 init_data.xml
[2026-03-10 04:46:58] -rw-r--r--. 1 boincer umatlas      8192 Mar 10 04:46 boinc_mmap_file
[2026-03-10 04:46:58] -rw-r--r--. 1 boincer umatlas     21171 Mar 10 04:46 stderr.txt
[2026-03-10 04:46:58] HITS file was successfully produced:
[2026-03-10 04:46:58] -rw-------. 1 boincer umatlas 184774881 Mar 10 01:31 shared/HITS.pool.root.1
[2026-03-10 04:46:58]  *** Contents of shared directory: ***
[2026-03-10 04:46:58] total 612308
[2026-03-10 04:46:58] -rw-r--r--. 2 boincer umatlas 438549625 Mar  9 19:24 ATLAS.root_0
[2026-03-10 04:46:58] -rw-r--r--. 2 boincer umatlas     15845 Mar  9 19:24 start_atlas.sh
[2026-03-10 04:46:58] -rw-r--r--. 2 boincer umatlas    597953 Mar  9 19:24 input.tar.gz
[2026-03-10 04:46:58] -rw-------. 1 boincer umatlas 184774881 Mar 10 01:31 HITS.pool.root.1
[2026-03-10 04:46:58] -rw-------. 1 boincer umatlas   3051520 Mar 10 01:41 result.tar.gz
04:46:59 (1694032): run_atlas exited; CPU time 45209.118995
04:46:59 (1694032): called boinc_finish(0)

</stderr_txt>
]]>

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