Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
05:46:25 (161204): wrapper (7.7.26015): starting
05:46:25 (161204): wrapper: running run_atlas (--nthreads 2)
[2026-03-13 05:46:25] Arguments: --nthreads 2
[2026-03-13 05:46:25] Threads: 2
[2026-03-13 05:46:25] Checking for CVMFS
[2026-03-13 05:46:25] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-13 05:46:28] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-13 05:46:28] Running cvmfs_config stat atlas.cern.ch
[2026-03-13 05:46:28] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-13 05:46:28] 2.13.3.0 3465 5009 88912 157227 3 49 9934233 10240001 0 130560 0 502848 99.940 190032 76 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.35.184:3128 1
[2026-03-13 05:46:28] CVMFS is ok
[2026-03-13 05:46:28] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-13 05:46:28] Checking for apptainer binary...
[2026-03-13 05:46:28] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-13 05:46:28] Running /usr/bin/apptainer --version
[2026-03-13 05:46:28] apptainer version 1.4.5-3.el9
[2026-03-13 05:46:28] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-13 05:46:28] ahanllin02
[2026-03-13 05:46:28] apptainer works
[2026-03-13 05:46:28] Set ATHENA_PROC_NUMBER=2
[2026-03-13 05:46:28] Set ATHENA_CORE_NUMBER=2
[2026-03-13 05:46:28] Starting ATLAS job with PandaID=7041005670
[2026-03-13 05:46:28] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-13 11:39:23]  *** The last 200 lines of the pilot log: ***
[2026-03-13 11:39:23] 2026-03-13 10:38:28,944 | INFO     | sum of deviations: -22128814328.000008
[2026-03-13 11:39:23] 2026-03-13 10:38:28,944 | INFO     | mean x: 1773387592.0
[2026-03-13 11:39:23] 2026-03-13 10:38:28,944 | INFO     | mean y: 2308951.815249267
[2026-03-13 11:39:23] 2026-03-13 10:38:28,945 | INFO     | intersect: 3194023067.055628
[2026-03-13 11:39:23] 2026-03-13 10:38:28,945 | INFO     | chi2: 1.3682970629994637
[2026-03-13 11:39:23] 2026-03-13 10:38:28,945 | INFO     | current chi2=1.3682970629994637 (change=0.032352332415289814 %)
[2026-03-13 11:39:23] 2026-03-13 10:38:28,945 | INFO     | right removable region: 340
[2026-03-13 11:39:23] 2026-03-13 10:38:28,945 | INFO     | sum of square deviations: 12295263090.0
[2026-03-13 11:39:23] 2026-03-13 10:38:28,948 | INFO     | sum of deviations: -45079410713.0
[2026-03-13 11:39:23] 2026-03-13 10:38:28,948 | INFO     | mean x: 1773387897.0
[2026-03-13 11:39:23] 2026-03-13 10:38:28,948 | INFO     | mean y: 2314990.249266862
[2026-03-13 11:39:23] 2026-03-13 10:38:28,948 | INFO     | intersect: 6504272758.631296
[2026-03-13 11:39:23] 2026-03-13 10:38:28,948 | INFO     | chi2: 0.3083704139249917
[2026-03-13 11:39:23] 2026-03-13 10:38:28,948 | INFO     | current chi2=0.3083704139249917 (change=77.47048815351224 %)
[2026-03-13 11:39:23] 2026-03-13 10:38:28,949 | INFO     | sum of square deviations: 11762304260.0
[2026-03-13 11:39:23] 2026-03-13 10:38:28,951 | INFO     | sum of deviations: -28112844452.499996
[2026-03-13 11:39:23] 2026-03-13 10:38:28,951 | INFO     | mean x: 1773388049.5
[2026-03-13 11:39:23] 2026-03-13 10:38:28,951 | INFO     | mean y: 2310131.901785714
[2026-03-13 11:39:23] 2026-03-13 10:38:28,951 | INFO     | intersect: 4240848881.4100275
[2026-03-13 11:39:23] 2026-03-13 10:38:28,952 | INFO     | chi2: 0.23052870439374007
[2026-03-13 11:39:23] 2026-03-13 10:38:28,952 | INFO     | current chi2=0.23052870439374007 (change=25.242924099127723 %)
[2026-03-13 11:39:23] 2026-03-13 10:38:28,952 | INFO     | sum of square deviations: 11244973630.0
[2026-03-13 11:39:23] 2026-03-13 10:38:28,954 | INFO     | sum of deviations: -9337010140.0
[2026-03-13 11:39:23] 2026-03-13 10:38:28,954 | INFO     | mean x: 1773388202.0
[2026-03-13 11:39:23] 2026-03-13 10:38:28,955 | INFO     | mean y: 2304596.311178248
[2026-03-13 11:39:23] 2026-03-13 10:38:28,955 | INFO     | intersect: 1474797477.9356918
[2026-03-13 11:39:23] 2026-03-13 10:38:28,955 | INFO     | chi2: 0.11824774674602294
[2026-03-13 11:39:23] 2026-03-13 10:38:28,955 | INFO     | current chi2=0.11824774674602294 (change=48.70584682415197 %)
[2026-03-13 11:39:23] 2026-03-13 10:38:28,955 | INFO     | sum of square deviations: 10743038637.5
[2026-03-13 11:39:23] 2026-03-13 10:38:28,958 | INFO     | sum of deviations: 5421059721.5
[2026-03-13 11:39:23] 2026-03-13 10:38:28,958 | INFO     | mean x: 1773388354.5
[2026-03-13 11:39:23] 2026-03-13 10:38:28,958 | INFO     | mean y: 2300128.9969325154
[2026-03-13 11:39:23] 2026-03-13 10:38:28,958 | INFO     | intersect: -892571843.7798771
[2026-03-13 11:39:23] 2026-03-13 10:38:28,958 | INFO     | chi2: 0.007099745590473297
[2026-03-13 11:39:23] 2026-03-13 10:38:28,958 | INFO     | current chi2=0.007099745590473297 (change=93.99587240700458 %)
[2026-03-13 11:39:23] 2026-03-13 10:38:28,959 | INFO     | sum of square deviations: 10256266720.0
[2026-03-13 11:39:23] 2026-03-13 10:38:28,961 | INFO     | sum of deviations: 3423575406.9999995
[2026-03-13 11:39:23] 2026-03-13 10:38:28,961 | INFO     | mean x: 1773388507.0
[2026-03-13 11:39:23] 2026-03-13 10:38:28,961 | INFO     | mean y: 2300754.744548287
[2026-03-13 11:39:23] 2026-03-13 10:38:28,961 | INFO     | intersect: -589662134.4208035
[2026-03-13 11:39:23] 2026-03-13 10:38:28,961 | INFO     | chi2: 0.0058395537529405215
[2026-03-13 11:39:23] 2026-03-13 10:38:28,961 | INFO     | current chi2=0.0058395537529405215 (change=17.749816827574048 %)
[2026-03-13 11:39:23] 2026-03-13 10:38:28,961 | INFO     | left removable region: 50
[2026-03-13 11:39:23] 2026-03-13 10:38:28,962 | INFO     | sum of square deviations: 7562532492.5
[2026-03-13 11:39:23] 2026-03-13 10:38:28,964 | INFO     | sum of deviations: -1229009608.5000005
[2026-03-13 11:39:23] 2026-03-13 10:38:28,964 | INFO     | mean x: 1773389086.5
[2026-03-13 11:39:23] 2026-03-13 10:38:28,964 | INFO     | mean y: 2302389.4103448275
[2026-03-13 11:39:23] 2026-03-13 10:38:28,964 | INFO     | intersect: 290501115.0461062
[2026-03-13 11:39:23] 2026-03-13 10:38:28,964 | INFO     | chi2: 0.003375332078371995
[2026-03-13 11:39:23] 2026-03-13 10:38:28,964 | INFO     | current memory leak: -0.16 B/s (using 290 data points, chi2=0.00)
[2026-03-13 11:39:23] 2026-03-13 10:38:28,965 | INFO     | could have reported an average CPU frequency of 2493 MHz (15 samples)
[2026-03-13 11:39:23] 2026-03-13 10:38:28,965 | INFO     | ..............................
[2026-03-13 11:39:23] 2026-03-13 10:38:28,965 | INFO     | . Timing measurements:
[2026-03-13 11:39:23] 2026-03-13 10:38:28,965 | INFO     | . get job = 0 s
[2026-03-13 11:39:23] 2026-03-13 10:38:28,965 | INFO     | . initial setup = 4 s
[2026-03-13 11:39:23] 2026-03-13 10:38:28,965 | INFO     | . payload setup = 3 s
[2026-03-13 11:39:23] 2026-03-13 10:38:28,965 | INFO     | . stage-in = 0 s
[2026-03-13 11:39:23] 2026-03-13 10:38:28,965 | INFO     | . payload execution = 21081 s
[2026-03-13 11:39:23] 2026-03-13 10:38:28,965 | INFO     | . stage-out = 0 s
[2026-03-13 11:39:23] 2026-03-13 10:38:28,965 | INFO     | . log creation = 0 s
[2026-03-13 11:39:23] 2026-03-13 10:38:28,965 | INFO     | ..............................
[2026-03-13 11:39:23] 2026-03-13 10:38:29,419 | INFO     | 
[2026-03-13 11:39:23] 2026-03-13 10:38:29,419 | INFO     | job summary report
[2026-03-13 11:39:23] 2026-03-13 10:38:29,419 | INFO     | --------------------------------------------------
[2026-03-13 11:39:23] 2026-03-13 10:38:29,419 | INFO     | PanDA job id: 7041005670
[2026-03-13 11:39:23] 2026-03-13 10:38:29,419 | INFO     | task id: 48955010
[2026-03-13 11:39:23] 2026-03-13 10:38:29,420 | INFO     | errors: (none)
[2026-03-13 11:39:23] 2026-03-13 10:38:29,420 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-13 11:39:23] 2026-03-13 10:38:29,420 | INFO     | pilot state: finished 
[2026-03-13 11:39:23] 2026-03-13 10:38:29,420 | INFO     | transexitcode: 0
[2026-03-13 11:39:23] 2026-03-13 10:38:29,420 | INFO     | exeerrorcode: 0
[2026-03-13 11:39:23] 2026-03-13 10:38:29,420 | INFO     | exeerrordiag: 
[2026-03-13 11:39:23] 2026-03-13 10:38:29,420 | INFO     | exitcode: 0
[2026-03-13 11:39:23] 2026-03-13 10:38:29,420 | INFO     | exitmsg: OK
[2026-03-13 11:39:23] 2026-03-13 10:38:29,420 | INFO     | cpuconsumptiontime: 41499 s
[2026-03-13 11:39:23] 2026-03-13 10:38:29,420 | INFO     | nevents: 400
[2026-03-13 11:39:23] 2026-03-13 10:38:29,420 | INFO     | neventsw: 0
[2026-03-13 11:39:23] 2026-03-13 10:38:29,420 | INFO     | pid: 169604
[2026-03-13 11:39:23] 2026-03-13 10:38:29,421 | INFO     | pgrp: 169604
[2026-03-13 11:39:23] 2026-03-13 10:38:29,421 | INFO     | corecount: 2
[2026-03-13 11:39:23] 2026-03-13 10:38:29,421 | INFO     | event service: False
[2026-03-13 11:39:23] 2026-03-13 10:38:29,421 | INFO     | sizes: {0: 2279971, 1: 2280205, 11: 2280205, 21089: 2314182, 21090: 2323180, 21092: 2323236, 21094: 2323558}
[2026-03-13 11:39:23] 2026-03-13 10:38:29,421 | INFO     | --------------------------------------------------
[2026-03-13 11:39:23] 2026-03-13 10:38:29,421 | INFO     | 
[2026-03-13 11:39:23] 2026-03-13 10:38:29,421 | INFO     | executing command: ls -lF /var/lib/boinc/slots/0
[2026-03-13 11:39:23] 2026-03-13 10:38:29,434 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-13 11:39:23] 2026-03-13 10:38:29,435 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-13 11:39:23] 2026-03-13 10:38:29,435 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-13 11:39:23] 2026-03-13 10:38:29,435 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-13 11:39:23] 2026-03-13 10:38:29,435 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-13 11:39:23] 2026-03-13 10:38:29,435 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-13 11:39:23] 2026-03-13 10:38:29,435 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-13 11:39:23] 2026-03-13 10:38:29,435 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-13 11:39:23] 2026-03-13 10:38:29,435 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-13 11:39:23] 2026-03-13 10:38:29,435 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-13 11:39:23] 2026-03-13 10:38:29,435 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-13 11:39:23] 2026-03-13 10:38:29,436 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-13 11:39:23] 2026-03-13 10:38:29,436 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-13 11:39:23] 2026-03-13 10:38:29,436 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-13 11:39:23] 2026-03-13 10:38:29,436 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-13 11:39:23] 2026-03-13 10:38:29,436 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-13 11:39:23] 2026-03-13 10:38:29,436 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-13 11:39:23] 2026-03-13 10:38:29,436 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-13 11:39:23] 2026-03-13 10:38:29,436 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-13 11:39:23] 2026-03-13 10:38:29,436 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-13 11:39:23] 2026-03-13 10:38:29,436 | INFO     | job 7041005670 has completed (purged errors)
[2026-03-13 11:39:23] 2026-03-13 10:38:29,437 | INFO     | overall cleanup function is called
[2026-03-13 11:39:23] 2026-03-13 10:38:29,522 | WARNING  | process 169604 can no longer be monitored (due to stat problems) - aborting
[2026-03-13 11:39:23] 2026-03-13 10:38:29,563 | INFO     | using path: /var/lib/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-03-13 11:39:23] 2026-03-13 10:38:29,614 | INFO     | number of running child processes to parent process 169604: 1
[2026-03-13 11:39:23] 2026-03-13 10:38:29,614 | INFO     | maximum number of monitored processes: 6
[2026-03-13 11:39:23] 2026-03-13 10:38:29,614 | INFO     | aborting job monitoring since job object (job id=7041005670) has expired
[2026-03-13 11:39:23] 2026-03-13 10:38:30,443 | INFO     | --- collectZombieJob: --- 10, [169604]
[2026-03-13 11:39:23] 2026-03-13 10:38:30,443 | INFO     | zombie collector waiting for pid 169604
[2026-03-13 11:39:23] 2026-03-13 10:38:30,444 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-13 11:39:23] 2026-03-13 10:38:30,444 | INFO     | collected zombie processes
[2026-03-13 11:39:23] 2026-03-13 10:38:30,444 | INFO     | will attempt to kill all subprocesses of pid=169604
[2026-03-13 11:39:23] 2026-03-13 10:38:30,495 | INFO     | process IDs to be killed: [169604] (in reverse order)
[2026-03-13 11:39:23] 2026-03-13 10:38:30,518 | WARNING  | found no corresponding commands to process id(s)
[2026-03-13 11:39:23] 2026-03-13 10:38:30,518 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-13 11:39:23] 2026-03-13 10:38:30,520 | INFO     | did not find any defunct processes belonging to 169604
[2026-03-13 11:39:23] 2026-03-13 10:38:30,522 | INFO     | did not find any defunct processes belonging to 169604
[2026-03-13 11:39:23] 2026-03-13 10:38:30,522 | INFO     | ready for new job
[2026-03-13 11:39:23] 2026-03-13 10:38:30,522 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-13 11:39:23] 2026-03-13 10:38:30,524 | INFO     | **************************************
[2026-03-13 11:39:23] 2026-03-13 10:38:30,524 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-13 11:39:23] 2026-03-13 10:38:30,524 | INFO     | **************************************
[2026-03-13 11:39:23] 2026-03-13 10:38:30,524 | INFO     | 
[2026-03-13 11:39:23] 2026-03-13 10:38:30,524 | INFO     | architecture information:
[2026-03-13 11:39:23] 2026-03-13 10:38:30,525 | INFO     | executing command: cat /etc/os-release
[2026-03-13 11:39:23] 2026-03-13 10:38:30,533 | INFO     | cat /etc/os-release:
[2026-03-13 11:39:23] NAME="CentOS Linux"
[2026-03-13 11:39:23] VERSION="7 (Core)"
[2026-03-13 11:39:23] ID="centos"
[2026-03-13 11:39:23] ID_LIKE="rhel fedora"
[2026-03-13 11:39:23] VERSION_ID="7"
[2026-03-13 11:39:23] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-13 11:39:23] ANSI_COLOR="0;31"
[2026-03-13 11:39:23] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-13 11:39:23] HOME_URL="https://www.centos.org/"
[2026-03-13 11:39:23] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-13 11:39:23] 
[2026-03-13 11:39:23] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-13 11:39:23] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-13 11:39:23] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-13 11:39:23] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-13 11:39:23] 
[2026-03-13 11:39:23] 2026-03-13 10:38:30,534 | INFO     | **************************************
[2026-03-13 11:39:23] 2026-03-13 10:38:31,037 | INFO     | executing command: df -mP /var/lib/boinc/slots/0
[2026-03-13 11:39:23] 2026-03-13 10:38:31,046 | INFO     | sufficient remaining disk space (461438451712 B)
[2026-03-13 11:39:23] 2026-03-13 10:38:31,046 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-13 11:39:23] 2026-03-13 10:38:31,046 | INFO     | current server update state: UPDATING_FINAL
[2026-03-13 11:39:23] 2026-03-13 10:38:31,046 | INFO     | update_server=False
[2026-03-13 11:39:23] 2026-03-13 10:38:31,046 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-13 11:39:23] 2026-03-13 10:38:31,047 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-13 11:39:23] 2026-03-13 10:38:31,047 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-13 11:39:23] 2026-03-13 10:38:31,047 | INFO     | aborting loop
[2026-03-13 11:39:23] 2026-03-13 10:38:31,073 | INFO     | all job control threads have been joined
[2026-03-13 11:39:23] 2026-03-13 10:38:31,241 | INFO     | all payload control threads have been joined
[2026-03-13 11:39:23] 2026-03-13 10:38:32,052 | INFO     | [job] retrieve thread has finished
[2026-03-13 11:39:23] 2026-03-13 10:38:32,053 | INFO     | [job] job monitor thread has finished
[2026-03-13 11:39:23] 2026-03-13 10:38:32,079 | INFO     | [job] control thread has finished
[2026-03-13 11:39:23] 2026-03-13 10:38:32,115 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-13 11:39:23] 2026-03-13 10:38:32,137 | INFO     | [job] create_data_payload thread has finished
[2026-03-13 11:39:23] 2026-03-13 10:38:32,139 | INFO     | all data control threads have been joined
[2026-03-13 11:39:23] 2026-03-13 10:38:32,154 | INFO     | [payload] validate_pre thread has finished
[2026-03-13 11:39:23] 2026-03-13 10:38:32,247 | INFO     | [payload] control thread has finished
[2026-03-13 11:39:23] 2026-03-13 10:38:32,522 | INFO     | [payload] execute_payloads thread has finished
[2026-03-13 11:39:23] 2026-03-13 10:38:32,576 | INFO     | [data] copytool_in thread has finished
[2026-03-13 11:39:23] 2026-03-13 10:38:32,724 | INFO     | [payload] failed_post thread has finished
[2026-03-13 11:39:23] 2026-03-13 10:38:33,040 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-13 11:39:23] 2026-03-13 10:38:33,053 | INFO     | [data] copytool_out thread has finished
[2026-03-13 11:39:23] 2026-03-13 10:38:33,144 | INFO     | [data] control thread has finished
[2026-03-13 11:39:23] 2026-03-13 10:38:33,237 | INFO     | [payload] validate_post thread has finished
[2026-03-13 11:39:23] 2026-03-13 10:38:33,406 | INFO     | [job] validate thread has finished
[2026-03-13 11:39:23] 2026-03-13 10:38:34,033 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-13 11:39:23] 2026-03-13 10:38:35,039 | INFO     | [job] queue monitor thread has finished
[2026-03-13 11:39:23] 2026-03-13 10:38:37,046 | INFO     | [data] queue_monitor thread has finished
[2026-03-13 11:39:23] 2026-03-13 10:39:01,415 | INFO     | PID=165225 has CPU usage=2.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-13 11:39:23] 2026-03-13 10:39:01,416 | INFO     | found 0 job(s) in 20 queues
[2026-03-13 11:39:23] 2026-03-13 10:39:01,416 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-13 11:39:23] 2026-03-13 10:39:01,416 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-13 11:39:23] 2026-03-13 10:39:16,277 | INFO     | [monitor] cgroup control has ended
[2026-03-13 11:39:23] 2026-03-13 10:39:18,327 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140669080971072)>', '<ExcThread(monitor, started 140668634658560)>']
[2026-03-13 11:39:23] 2026-03-13 10:39:18,501 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-13 11:39:23] 2026-03-13 10:39:18,502 | INFO     | [monitor] control thread has ended
[2026-03-13 11:39:23] 2026-03-13 10:39:23,353 | INFO     | all workflow threads have been joined
[2026-03-13 11:39:23] 2026-03-13 10:39:23,353 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-13 11:39:23] 2026-03-13 10:39:23,353 | INFO     | traces error code: 0
[2026-03-13 11:39:23] 2026-03-13 10:39:23,353 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-13 11:39:23] 2026-03-13 10:39:23,443 [wrapper] ==== pilot stdout END ====
[2026-03-13 11:39:23] 2026-03-13 10:39:23,446 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-13 11:39:23] 2026-03-13 10:39:23,447 [wrapper] pilotpid: 165225
[2026-03-13 11:39:23] 2026-03-13 10:39:23,450 [wrapper] Pilot exit status: 0
[2026-03-13 11:39:23] 2026-03-13 10:39:23,457 [wrapper] pandaids: 7041005670
[2026-03-13 11:39:23] 2026-03-13 10:39:23,473 [wrapper] cleanup supervisor_pilot  175011 165226
[2026-03-13 11:39:23] 2026-03-13 10:39:23,476 [wrapper] Test setup, not cleaning
[2026-03-13 11:39:23] 2026-03-13 10:39:23,478 [wrapper] apfmon messages muted
[2026-03-13 11:39:23] 2026-03-13 10:39:23,480 [wrapper] ==== wrapper stdout END ====
[2026-03-13 11:39:23] 2026-03-13 10:39:23,482 [wrapper] ==== wrapper stderr END ====
[2026-03-13 11:39:23]  *** Error codes and diagnostics ***
[2026-03-13 11:39:23]     "exeErrorCode": 0,
[2026-03-13 11:39:23]     "exeErrorDiag": "",
[2026-03-13 11:39:23]     "pilotErrorCode": 0,
[2026-03-13 11:39:23]     "pilotErrorDiag": "",
[2026-03-13 11:39:23]  *** Listing of results directory ***
[2026-03-13 11:39:23] total 616368
[2026-03-13 11:39:23] -rw-r--r-- 1 boinc boinc    584627 Mar  9 18:06 pilot3.tar.gz
[2026-03-13 11:39:23] -rw-r--r-- 1 boinc boinc      5111 Mar  9 18:49 queuedata.json
[2026-03-13 11:39:23] -rwx------ 1 boinc boinc     36322 Mar  9 18:49 runpilot2-wrapper.sh
[2026-03-13 11:39:23] -rw-r--r-- 1 boinc boinc       100 Mar 13 05:46 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-13 11:39:23] -rwxr-xr-x 1 boinc boinc      7986 Mar 13 05:46 run_atlas
[2026-03-13 11:39:23] -rw-r--r-- 1 boinc boinc       105 Mar 13 05:46 job.xml
[2026-03-13 11:39:23] -rw-r--r-- 2 boinc boinc     15845 Mar 13 05:46 start_atlas.sh
[2026-03-13 11:39:23] drwxrwx--x 2 boinc boinc        68 Mar 13 05:46 shared
[2026-03-13 11:39:23] -rw-r--r-- 2 boinc boinc    597952 Mar 13 05:46 input.tar.gz
[2026-03-13 11:39:23] -rw-r--r-- 1 boinc boinc      6511 Mar 13 05:46 init_data.xml
[2026-03-13 11:39:23] -rw-r--r-- 2 boinc boinc 435329129 Mar 13 05:46 EVNT.46701403._001402.pool.root.1
[2026-03-13 11:39:23] -rw-r--r-- 1 boinc boinc         0 Mar 13 05:46 boinc_setup_complete
[2026-03-13 11:39:23] -rw-r--r-- 1 boinc boinc         0 Mar 13 05:46 boinc_lockfile
[2026-03-13 11:39:23] -rw-r--r-- 1 boinc boinc      2562 Mar 13 05:46 pandaJob.out
[2026-03-13 11:39:23] -rw------- 1 boinc boinc        51 Mar 13 05:46 setup.sh.local
[2026-03-13 11:39:23] -rw------- 1 boinc boinc   1006514 Mar 13 05:46 agis_schedconf.cvmfs.json
[2026-03-13 11:39:23] -rw------- 1 boinc boinc       419 Mar 13 05:46 workernode_map.json
[2026-03-13 11:39:23] drwx------ 5 boinc boinc      4096 Mar 13 05:46 pilot3
[2026-03-13 11:39:23] -rw------- 1 boinc boinc 185142314 Mar 13 11:37 HITS.48955010._020117.pool.root.1
[2026-03-13 11:39:23] -rw------- 1 boinc boinc      1015 Mar 13 11:38 memory_monitor_summary.json
[2026-03-13 11:39:23] -rw------- 1 boinc boinc   1511578 Mar 13 11:38 agis_ddmendpoints.agis.ALL.json
[2026-03-13 11:39:23] -rw-r--r-- 1 boinc boinc       531 Mar 13 11:38 boinc_task_state.xml
[2026-03-13 11:39:23] -rw------- 1 boinc boinc        95 Mar 13 11:38 pilot_heartbeat.json
[2026-03-13 11:39:23] -rw------- 1 boinc boinc    455929 Mar 13 11:38 log.48955010._020117.job.log.tgz.1
[2026-03-13 11:39:23] -rw------- 1 boinc boinc      6313 Mar 13 11:38 heartbeat.json
[2026-03-13 11:39:23] -rw-r--r-- 1 boinc boinc        28 Mar 13 11:38 wrapper_checkpoint.txt
[2026-03-13 11:39:23] -rw-r--r-- 1 boinc boinc      8192 Mar 13 11:38 boinc_mmap_file
[2026-03-13 11:39:23] -rw------- 1 boinc boinc      4744 Mar 13 11:39 pilotlog.txt
[2026-03-13 11:39:23] -rw------- 1 boinc boinc   2922751 Mar 13 11:39 log.48955010._020117.job.log.1
[2026-03-13 11:39:23] -rw------- 1 boinc boinc       357 Mar 13 11:39 output.list
[2026-03-13 11:39:23] -rw-r--r-- 1 boinc boinc       620 Mar 13 11:39 runtime_log
[2026-03-13 11:39:23] -rw------- 1 boinc boinc   3399680 Mar 13 11:39 result.tar.gz
[2026-03-13 11:39:23] -rw-r--r-- 1 boinc boinc      9293 Mar 13 11:39 runtime_log.err
[2026-03-13 11:39:23] -rw------- 1 boinc boinc       652 Mar 13 11:39 gwYNDmdutJ9n9Rq4apOajLDm4fhM0noT9bVooX4SDmbiaLDmMZXnrn.diag
[2026-03-13 11:39:23] -rw-r--r-- 1 boinc boinc     20747 Mar 13 11:39 stderr.txt
[2026-03-13 11:39:23] HITS file was successfully produced:
[2026-03-13 11:39:23] -rw------- 1 boinc boinc 185142314 Mar 13 11:37 shared/HITS.pool.root.1
[2026-03-13 11:39:23]  *** Contents of shared directory: ***
[2026-03-13 11:39:23] total 609852
[2026-03-13 11:39:23] -rw-r--r-- 2 boinc boinc     15845 Mar 13 05:46 start_atlas.sh
[2026-03-13 11:39:23] -rw-r--r-- 2 boinc boinc    597952 Mar 13 05:46 input.tar.gz
[2026-03-13 11:39:23] -rw-r--r-- 2 boinc boinc 435329129 Mar 13 05:46 ATLAS.root_0
[2026-03-13 11:39:23] -rw------- 1 boinc boinc 185142314 Mar 13 11:37 HITS.pool.root.1
[2026-03-13 11:39:23] -rw------- 1 boinc boinc   3399680 Mar 13 11:39 result.tar.gz
11:39:24 (161204): run_atlas exited; CPU time 41843.182783
11:39:24 (161204): called boinc_finish(0)

</stderr_txt>
]]>

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