Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
03:25:10 (520075): wrapper (7.7.26015): starting
03:25:10 (520075): wrapper: running run_atlas (--nthreads 4)
[2026-03-10 03:25:10] Arguments: --nthreads 4
[2026-03-10 03:25:10] Threads: 4
[2026-03-10 03:25:10] Checking for CVMFS
[2026-03-10 03:25:10] No cvmfs_config command found, will try listing directly
[2026-03-10 03:25:10] CVMFS is ok
[2026-03-10 03:25:10] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-10 03:25:10] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-10 03:25:10] Further information can be found at the LHC@home message board.
[2026-03-10 03:25:10] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-10 03:25:10] Checking for apptainer binary...
[2026-03-10 03:25:10] which: no apptainer in ((null))
[2026-03-10 03:25:10] apptainer is not installed, using version from CVMFS
[2026-03-10 03:25:10] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-10 03:25:10] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot44/slots/5/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut18.grid.cesnet.cz
[2026-03-10 03:25:10] apptainer works
[2026-03-10 03:25:10] Set ATHENA_PROC_NUMBER=4
[2026-03-10 03:25:10] Set ATHENA_CORE_NUMBER=4
[2026-03-10 03:25:10] Starting ATLAS job with PandaID=7041001595
[2026-03-10 03:25:10] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot44/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-10 04:48:41]  *** The last 200 lines of the pilot log: ***
[2026-03-10 04:48:41]  direct_access_wan=False
[2026-03-10 04:48:41]  domain=
[2026-03-10 04:48:41]  filesize=273424
[2026-03-10 04:48:41]  filetype=log
[2026-03-10 04:48:41]  guid=53972609-4c71-4842-8017-645a04fc1665
[2026-03-10 04:48:41]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-03-10 04:48:41]  is_altstaged=None
[2026-03-10 04:48:41]  is_tar=False
[2026-03-10 04:48:41]  lfn=log.48955010._019369.job.log.tgz.1
[2026-03-10 04:48:41]  mtime=0
[2026-03-10 04:48:41]  protocol_id=None
[2026-03-10 04:48:41]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-03-10 04:48:41]  replicas=None
[2026-03-10 04:48:41]  scope=mc23_13p6TeV
[2026-03-10 04:48:41]  status=None
[2026-03-10 04:48:41]  status_code=0
[2026-03-10 04:48:41]  storage_token=
[2026-03-10 04:48:41]  surl=/var/lib/boinc/var/slot44/slots/5/PanDA_Pilot-7041001595/log.48955010._019369.job.log.tgz.1
[2026-03-10 04:48:41]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ff/93/log.48955010._019369.job.log.tgz.1
[2026-03-10 04:48:41]  workdir=None
[2026-03-10 04:48:41] ]
[2026-03-10 04:48:41] 2026-03-10 03:47:45,851 | INFO     | transferring file log.48955010._019369.job.log.tgz.1 from /var/lib/boinc/var/slot44/slots/5/PanDA_Pilot-7041001595/log.48955010._019369.job.log.tgz.1 to /var/lib/b
[2026-03-10 04:48:41] 2026-03-10 03:47:45,851 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/var/slot44/slots/5/PanDA_Pilot-7041001595/log.48955010._019369.job.log.tgz.1 /var/lib/boinc/var/slot44/slots/5/lo
[2026-03-10 04:48:41] 2026-03-10 03:47:45,864 | INFO     | adding to output.list: log.48955010._019369.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ff/93/log.48955010._019369.job.log.tg
[2026-03-10 04:48:41] 2026-03-10 03:47:45,865 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-10 04:48:41] 2026-03-10 03:47:45,865 | INFO     | summary of transferred files:
[2026-03-10 04:48:41] 2026-03-10 03:47:45,865 | INFO     |  -- lfn=log.48955010._019369.job.log.tgz.1, status_code=0, status=transferred
[2026-03-10 04:48:41] 2026-03-10 03:47:45,865 | INFO     | stage-out finished correctly
[2026-03-10 04:48:41] 2026-03-10 03:47:46,248 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-10 04:48:41] 2026-03-10 03:47:46,510 | INFO     | job 7041001595 has state=finished
[2026-03-10 04:48:41] 2026-03-10 03:47:46,510 | INFO     | preparing for final server update for job 7041001595 in state='finished'
[2026-03-10 04:48:41] 2026-03-10 03:47:46,510 | INFO     | reading metadata from: /var/lib/boinc/var/slot44/slots/5/PanDA_Pilot-7041001595/jobReport.json
[2026-03-10 04:48:41] 2026-03-10 03:47:46,512 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot44/slots/5/workernode_map.json
[2026-03-10 04:48:41] 2026-03-10 03:47:46,512 | INFO     | this job has now completed (state=finished)
[2026-03-10 04:48:41] 2026-03-10 03:47:46,512 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-10 04:48:41] 2026-03-10 03:47:46,512 | INFO     | log transfer has been attempted: DONE
[2026-03-10 04:48:41] 2026-03-10 03:47:46,512 | INFO     | job 7041001595 has finished - writing final server update
[2026-03-10 04:48:41] 2026-03-10 03:47:46,512 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_1571852/.job.ad'
[2026-03-10 04:48:41] 2026-03-10 03:47:46,512 | INFO     | total number of processed events: 400 (read)
[2026-03-10 04:48:41] 2026-03-10 03:47:46,531 | INFO     | using path: /var/lib/boinc/var/slot44/slots/5/PanDA_Pilot-7041001595/memory_monitor_summary.json (trf name=prmon)
[2026-03-10 04:48:41] 2026-03-10 03:47:46,531 | INFO     | extracted standard info from prmon json
[2026-03-10 04:48:41] 2026-03-10 03:47:46,532 | INFO     | extracted standard memory fields from prmon json
[2026-03-10 04:48:41] 2026-03-10 03:47:46,532 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-10 04:48:41] 2026-03-10 03:47:46,532 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-10 04:48:41] 2026-03-10 03:47:46,532 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-10 04:48:41] 2026-03-10 03:47:46,533 | INFO     | fitting pss+swap vs Time
[2026-03-10 04:48:41] 2026-03-10 03:47:46,533 | INFO     | sum of square deviations: 125630262.5
[2026-03-10 04:48:41] 2026-03-10 03:47:46,533 | INFO     | sum of deviations: -132964170.5
[2026-03-10 04:48:41] 2026-03-10 03:47:46,534 | INFO     | mean x: 1773112083.5
[2026-03-10 04:48:41] 2026-03-10 03:47:46,534 | INFO     | mean y: 2340318.9594594594
[2026-03-10 04:48:41] 2026-03-10 03:47:46,534 | INFO     | intersect: 1878961227.76401
[2026-03-10 04:48:41] 2026-03-10 03:47:46,534 | INFO     | chi2: 0.0002668509724216528
[2026-03-10 04:48:41] 2026-03-10 03:47:46,534 | INFO     | current memory leak: -1.06 B/s (using 74 data points, chi2=0.00)
[2026-03-10 04:48:41] 2026-03-10 03:47:46,534 | INFO     | could have reported an average CPU frequency of 3529 MHz (6 samples)
[2026-03-10 04:48:41] 2026-03-10 03:47:46,534 | INFO     | ..............................
[2026-03-10 04:48:41] 2026-03-10 03:47:46,534 | INFO     | . Timing measurements:
[2026-03-10 04:48:41] 2026-03-10 03:47:46,534 | INFO     | . get job = 0 s
[2026-03-10 04:48:41] 2026-03-10 03:47:46,534 | INFO     | . initial setup = 6 s
[2026-03-10 04:48:41] 2026-03-10 03:47:46,534 | INFO     | . payload setup = 6 s
[2026-03-10 04:48:41] 2026-03-10 03:47:46,534 | INFO     | . stage-in = 0 s
[2026-03-10 04:48:41] 2026-03-10 03:47:46,534 | INFO     | . payload execution = 4916 s
[2026-03-10 04:48:41] 2026-03-10 03:47:46,534 | INFO     | . stage-out = 0 s
[2026-03-10 04:48:41] 2026-03-10 03:47:46,534 | INFO     | . log creation = 0 s
[2026-03-10 04:48:41] 2026-03-10 03:47:46,534 | INFO     | ..............................
[2026-03-10 04:48:41] 2026-03-10 03:47:46,586 | INFO     | 
[2026-03-10 04:48:41] 2026-03-10 03:47:46,586 | INFO     | job summary report
[2026-03-10 04:48:41] 2026-03-10 03:47:46,586 | INFO     | --------------------------------------------------
[2026-03-10 04:48:41] 2026-03-10 03:47:46,586 | INFO     | PanDA job id: 7041001595
[2026-03-10 04:48:41] 2026-03-10 03:47:46,586 | INFO     | task id: 48955010
[2026-03-10 04:48:41] 2026-03-10 03:47:46,587 | INFO     | errors: (none)
[2026-03-10 04:48:41] 2026-03-10 03:47:46,587 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-10 04:48:41] 2026-03-10 03:47:46,587 | INFO     | pilot state: finished 
[2026-03-10 04:48:41] 2026-03-10 03:47:46,587 | INFO     | transexitcode: 0
[2026-03-10 04:48:41] 2026-03-10 03:47:46,587 | INFO     | exeerrorcode: 0
[2026-03-10 04:48:41] 2026-03-10 03:47:46,587 | INFO     | exeerrordiag: 
[2026-03-10 04:48:41] 2026-03-10 03:47:46,587 | INFO     | exitcode: 0
[2026-03-10 04:48:41] 2026-03-10 03:47:46,587 | INFO     | exitmsg: OK
[2026-03-10 04:48:41] 2026-03-10 03:47:46,587 | INFO     | cpuconsumptiontime: 18619 s
[2026-03-10 04:48:41] 2026-03-10 03:47:46,587 | INFO     | nevents: 400
[2026-03-10 04:48:41] 2026-03-10 03:47:46,587 | INFO     | neventsw: 0
[2026-03-10 04:48:41] 2026-03-10 03:47:46,587 | INFO     | pid: 530917
[2026-03-10 04:48:41] 2026-03-10 03:47:46,587 | INFO     | pgrp: 530917
[2026-03-10 04:48:41] 2026-03-10 03:47:46,587 | INFO     | corecount: 4
[2026-03-10 04:48:41] 2026-03-10 03:47:46,587 | INFO     | event service: False
[2026-03-10 04:48:41] 2026-03-10 03:47:46,587 | INFO     | sizes: {0: 2280188, 11: 2280188, 4925: 2306639, 4927: 2315853}
[2026-03-10 04:48:41] 2026-03-10 03:47:46,587 | INFO     | --------------------------------------------------
[2026-03-10 04:48:41] 2026-03-10 03:47:46,587 | INFO     | 
[2026-03-10 04:48:41] 2026-03-10 03:47:46,587 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot44/slots/5
[2026-03-10 04:48:41] 2026-03-10 03:47:46,610 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-10 04:48:41] 2026-03-10 03:47:46,610 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-10 04:48:41] 2026-03-10 03:47:46,611 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-10 04:48:41] 2026-03-10 03:47:46,611 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-10 04:48:41] 2026-03-10 03:47:46,611 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-10 04:48:41] 2026-03-10 03:47:46,611 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-10 04:48:41] 2026-03-10 03:47:46,611 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-10 04:48:41] 2026-03-10 03:47:46,611 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-10 04:48:41] 2026-03-10 03:47:46,611 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-10 04:48:41] 2026-03-10 03:47:46,611 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-10 04:48:41] 2026-03-10 03:47:46,611 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-10 04:48:41] 2026-03-10 03:47:46,611 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-10 04:48:41] 2026-03-10 03:47:46,611 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-10 04:48:41] 2026-03-10 03:47:46,611 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-10 04:48:41] 2026-03-10 03:47:46,611 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-10 04:48:41] 2026-03-10 03:47:46,611 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-10 04:48:41] 2026-03-10 03:47:46,611 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-10 04:48:41] 2026-03-10 03:47:46,611 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-10 04:48:41] 2026-03-10 03:47:46,611 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-10 04:48:41] 2026-03-10 03:47:46,611 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-10 04:48:41] 2026-03-10 03:47:46,612 | INFO     | job 7041001595 has completed (purged errors)
[2026-03-10 04:48:41] 2026-03-10 03:47:46,612 | INFO     | overall cleanup function is called
[2026-03-10 04:48:41] 2026-03-10 03:47:47,619 | INFO     | --- collectZombieJob: --- 10, [530917]
[2026-03-10 04:48:41] 2026-03-10 03:47:47,619 | INFO     | zombie collector waiting for pid 530917
[2026-03-10 04:48:41] 2026-03-10 03:47:47,620 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-10 04:48:41] 2026-03-10 03:47:47,620 | INFO     | collected zombie processes
[2026-03-10 04:48:41] 2026-03-10 03:47:47,620 | INFO     | will attempt to kill all subprocesses of pid=530917
[2026-03-10 04:48:41] 2026-03-10 03:47:48,220 | INFO     | process IDs to be killed: [530917] (in reverse order)
[2026-03-10 04:48:41] 2026-03-10 03:47:48,430 | WARNING  | found no corresponding commands to process id(s)
[2026-03-10 04:48:41] 2026-03-10 03:47:48,430 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-10 04:48:41] 2026-03-10 03:47:48,457 | INFO     | did not find any defunct processes belonging to 530917
[2026-03-10 04:48:41] 2026-03-10 03:47:48,482 | INFO     | did not find any defunct processes belonging to 530917
[2026-03-10 04:48:41] 2026-03-10 03:47:48,482 | INFO     | ready for new job
[2026-03-10 04:48:41] 2026-03-10 03:47:48,482 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-10 04:48:41] 2026-03-10 03:47:48,483 | INFO     | **************************************
[2026-03-10 04:48:41] 2026-03-10 03:47:48,483 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-10 04:48:41] 2026-03-10 03:47:48,483 | INFO     | **************************************
[2026-03-10 04:48:41] 2026-03-10 03:47:48,483 | INFO     | 
[2026-03-10 04:48:41] 2026-03-10 03:47:48,486 | INFO     | architecture information:
[2026-03-10 04:48:41] 2026-03-10 03:47:48,487 | INFO     | executing command: cat /etc/os-release
[2026-03-10 04:48:41] 2026-03-10 03:47:48,495 | INFO     | cat /etc/os-release:
[2026-03-10 04:48:41] NAME="CentOS Linux"
[2026-03-10 04:48:41] VERSION="7 (Core)"
[2026-03-10 04:48:41] ID="centos"
[2026-03-10 04:48:41] ID_LIKE="rhel fedora"
[2026-03-10 04:48:41] VERSION_ID="7"
[2026-03-10 04:48:41] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-10 04:48:41] ANSI_COLOR="0;31"
[2026-03-10 04:48:41] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-10 04:48:41] HOME_URL="https://www.centos.org/"
[2026-03-10 04:48:41] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-10 04:48:41] 
[2026-03-10 04:48:41] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-10 04:48:41] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-10 04:48:41] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-10 04:48:41] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-10 04:48:41] 
[2026-03-10 04:48:41] 2026-03-10 03:47:48,495 | INFO     | **************************************
[2026-03-10 04:48:41] 2026-03-10 03:47:48,998 | INFO     | executing command: df -mP /var/lib/boinc/var/slot44/slots/5
[2026-03-10 04:48:41] 2026-03-10 03:47:49,014 | INFO     | sufficient remaining disk space (21255684096 B)
[2026-03-10 04:48:41] 2026-03-10 03:47:49,015 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-10 04:48:41] 2026-03-10 03:47:49,015 | INFO     | current server update state: UPDATING_FINAL
[2026-03-10 04:48:41] 2026-03-10 03:47:49,015 | INFO     | update_server=False
[2026-03-10 04:48:41] 2026-03-10 03:47:49,015 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-10 04:48:41] 2026-03-10 03:47:49,015 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-10 04:48:41] 2026-03-10 03:47:49,015 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-10 04:48:41] 2026-03-10 03:47:49,016 | INFO     | aborting loop
[2026-03-10 04:48:41] 2026-03-10 03:47:49,119 | INFO     | all data control threads have been joined
[2026-03-10 04:48:41] 2026-03-10 03:47:49,325 | INFO     | all job control threads have been joined
[2026-03-10 04:48:41] 2026-03-10 03:47:49,801 | INFO     | all payload control threads have been joined
[2026-03-10 04:48:41] 2026-03-10 03:47:50,020 | INFO     | [job] retrieve thread has finished
[2026-03-10 04:48:41] 2026-03-10 03:47:50,021 | INFO     | [job] job monitor thread has finished
[2026-03-10 04:48:41] 2026-03-10 03:47:50,124 | INFO     | [data] control thread has finished
[2026-03-10 04:48:41] 2026-03-10 03:47:50,231 | INFO     | [payload] execute_payloads thread has finished
[2026-03-10 04:48:41] 2026-03-10 03:47:50,232 | INFO     | job.realtimelogging is not enabled
[2026-03-10 04:48:41] 2026-03-10 03:47:50,331 | INFO     | [job] control thread has finished
[2026-03-10 04:48:41] 2026-03-10 03:47:50,585 | INFO     | [payload] validate_post thread has finished
[2026-03-10 04:48:41] 2026-03-10 03:47:50,807 | INFO     | [payload] control thread has finished
[2026-03-10 04:48:41] 2026-03-10 03:47:50,854 | INFO     | [job] create_data_payload thread has finished
[2026-03-10 04:48:41] 2026-03-10 03:47:50,871 | INFO     | [payload] failed_post thread has finished
[2026-03-10 04:48:41] 2026-03-10 03:47:51,014 | INFO     | [job] validate thread has finished
[2026-03-10 04:48:41] 2026-03-10 03:47:51,020 | INFO     | [data] copytool_out thread has finished
[2026-03-10 04:48:41] 2026-03-10 03:47:51,051 | INFO     | [payload] validate_pre thread has finished
[2026-03-10 04:48:41] 2026-03-10 03:47:51,237 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-10 04:48:41] 2026-03-10 03:47:51,451 | INFO     | [data] copytool_in thread has finished
[2026-03-10 04:48:41] 2026-03-10 03:47:51,596 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-10 04:48:41] 2026-03-10 03:47:52,308 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-10 04:48:41] 2026-03-10 03:47:52,601 | INFO     | [job] queue monitor thread has finished
[2026-03-10 04:48:41] 2026-03-10 03:47:56,314 | INFO     | [data] queue_monitor thread has finished
[2026-03-10 04:48:41] 2026-03-10 03:48:18,242 | INFO     | PID=524693 has CPU usage=6.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-10 04:48:41] 2026-03-10 03:48:18,242 | INFO     | .. there are 62 such processes running
[2026-03-10 04:48:41] 2026-03-10 03:48:18,242 | INFO     | found 0 job(s) in 20 queues
[2026-03-10 04:48:41] 2026-03-10 03:48:18,242 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-10 04:48:41] 2026-03-10 03:48:18,243 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-10 04:48:41] 2026-03-10 03:48:35,642 | INFO     | [monitor] cgroup control has ended
[2026-03-10 04:48:41] 2026-03-10 03:48:36,071 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23182292547392)>', '<ExcThread(monitor, started 23182051649280)>']
[2026-03-10 04:48:41] 2026-03-10 03:48:36,333 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-10 04:48:41] 2026-03-10 03:48:36,333 | INFO     | [monitor] control thread has ended
[2026-03-10 04:48:41] 2026-03-10 03:48:41,096 | INFO     | all workflow threads have been joined
[2026-03-10 04:48:41] 2026-03-10 03:48:41,096 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-10 04:48:41] 2026-03-10 03:48:41,097 | INFO     | traces error code: 0
[2026-03-10 04:48:41] 2026-03-10 03:48:41,097 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-10 04:48:41] 2026-03-10 03:48:41,266 [wrapper] ==== pilot stdout END ====
[2026-03-10 04:48:41] 2026-03-10 03:48:41,269 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-10 04:48:41] 2026-03-10 03:48:41,270 [wrapper] pilotpid: 524693
[2026-03-10 04:48:41] 2026-03-10 03:48:41,272 [wrapper] Pilot exit status: 0
[2026-03-10 04:48:41] 2026-03-10 03:48:41,281 [wrapper] pandaids: 7041001595
[2026-03-10 04:48:41] 2026-03-10 03:48:41,415 [wrapper] cleanup supervisor_pilot 1359678 524694
[2026-03-10 04:48:41] 2026-03-10 03:48:41,418 [wrapper] Test setup, not cleaning
[2026-03-10 04:48:41] 2026-03-10 03:48:41,421 [wrapper] apfmon messages muted
[2026-03-10 04:48:41] 2026-03-10 03:48:41,424 [wrapper] ==== wrapper stdout END ====
[2026-03-10 04:48:41] 2026-03-10 03:48:41,426 [wrapper] ==== wrapper stderr END ====
[2026-03-10 04:48:41]  *** Error codes and diagnostics ***
[2026-03-10 04:48:41]     "exeErrorCode": 0,
[2026-03-10 04:48:41]     "exeErrorDiag": "",
[2026-03-10 04:48:41]     "pilotErrorCode": 0,
[2026-03-10 04:48:41]     "pilotErrorDiag": "",
[2026-03-10 04:48:41]  *** Listing of results directory ***
[2026-03-10 04:48:41] total 612549
[2026-03-10 04:48:41] -rw-r--r--. 1 boinc boinc    584627 Mar  9 18:06 pilot3.tar.gz
[2026-03-10 04:48:41] -rwx------. 1 boinc boinc     36322 Mar  9 18:49 runpilot2-wrapper.sh
[2026-03-10 04:48:41] -rw-r--r--. 1 boinc boinc      5111 Mar  9 18:49 queuedata.json
[2026-03-10 04:48:41] -rw-r--r--. 1 boinc boinc       100 Mar 10 03:25 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-10 04:48:41] -rwxr-xr-x. 1 boinc boinc      7986 Mar 10 03:25 run_atlas
[2026-03-10 04:48:41] -rw-r--r--. 1 boinc boinc       105 Mar 10 03:25 job.xml
[2026-03-10 04:48:41] -rw-r--r--. 2 boinc boinc 437194299 Mar 10 03:25 EVNT.46701403._001387.pool.root.1
[2026-03-10 04:48:41] -rw-r--r--. 2 boinc boinc     15845 Mar 10 03:25 start_atlas.sh
[2026-03-10 04:48:41] drwxrwx--x. 2 boinc boinc         5 Mar 10 03:25 shared
[2026-03-10 04:48:41] -rw-r--r--. 2 boinc boinc    597947 Mar 10 03:25 input.tar.gz
[2026-03-10 04:48:41] -rw-r--r--. 1 boinc boinc      6705 Mar 10 03:25 init_data.xml
[2026-03-10 04:48:41] -rw-r--r--. 1 boinc boinc         0 Mar 10 03:25 boinc_lockfile
[2026-03-10 04:48:41] -rw-r--r--. 1 boinc boinc      2562 Mar 10 03:25 pandaJob.out
[2026-03-10 04:48:41] -rw-------. 1 boinc boinc   1002338 Mar 10 03:25 agis_schedconf.cvmfs.json
[2026-03-10 04:48:41] -rw-------. 1 boinc boinc   1511578 Mar 10 03:25 agis_ddmendpoints.agis.ALL.json
[2026-03-10 04:48:41] -rw-------. 1 boinc boinc       444 Mar 10 03:25 workernode_map.json
[2026-03-10 04:48:41] drwx------. 5 boinc boinc        22 Mar 10 03:25 pilot3
[2026-03-10 04:48:41] -rw-------. 1 boinc boinc 187470497 Mar 10 04:47 HITS.48955010._019369.pool.root.1
[2026-03-10 04:48:41] -rw-r--r--. 1 boinc boinc       530 Mar 10 04:47 boinc_task_state.xml
[2026-03-10 04:48:41] -rw-------. 1 boinc boinc        95 Mar 10 04:47 pilot_heartbeat.json
[2026-03-10 04:48:41] -rw-------. 1 boinc boinc      1045 Mar 10 04:47 memory_monitor_summary.json
[2026-03-10 04:48:41] -rw-------. 1 boinc boinc    273424 Mar 10 04:47 log.48955010._019369.job.log.tgz.1
[2026-03-10 04:48:41] -rw-------. 1 boinc boinc      6383 Mar 10 04:47 heartbeat.json
[2026-03-10 04:48:41] -rw-r--r--. 1 boinc boinc      8192 Mar 10 04:48 boinc_mmap_file
[2026-03-10 04:48:41] -rw-r--r--. 1 boinc boinc        27 Mar 10 04:48 wrapper_checkpoint.txt
[2026-03-10 04:48:41] -rw-------. 1 boinc boinc      4900 Mar 10 04:48 pilotlog.txt
[2026-03-10 04:48:41] -rw-------. 1 boinc boinc    718545 Mar 10 04:48 log.48955010._019369.job.log.1
[2026-03-10 04:48:41] -rw-------. 1 boinc boinc       357 Mar 10 04:48 output.list
[2026-03-10 04:48:41] -rw-r--r--. 1 boinc boinc       620 Mar 10 04:48 runtime_log
[2026-03-10 04:48:41] -rw-------. 1 boinc boinc   1013760 Mar 10 04:48 result.tar.gz
[2026-03-10 04:48:41] -rw-r--r--. 1 boinc boinc      9204 Mar 10 04:48 runtime_log.err
[2026-03-10 04:48:41] -rw-------. 1 boinc boinc       670 Mar 10 04:48 YbYNDmUutJ9n9Rq4apOajLDm4fhM0noT9bVooX4SDmahaLDmzPFgZn.diag
[2026-03-10 04:48:41] -rw-r--r--. 1 boinc boinc     20839 Mar 10 04:48 stderr.txt
[2026-03-10 04:48:41] HITS file was successfully produced:
[2026-03-10 04:48:41] -rw-------. 1 boinc boinc 187470497 Mar 10 04:47 shared/HITS.pool.root.1
[2026-03-10 04:48:41]  *** Contents of shared directory: ***
[2026-03-10 04:48:41] total 611063
[2026-03-10 04:48:41] -rw-r--r--. 2 boinc boinc 437194299 Mar 10 03:25 ATLAS.root_0
[2026-03-10 04:48:41] -rw-r--r--. 2 boinc boinc     15845 Mar 10 03:25 start_atlas.sh
[2026-03-10 04:48:41] -rw-r--r--. 2 boinc boinc    597947 Mar 10 03:25 input.tar.gz
[2026-03-10 04:48:41] -rw-------. 1 boinc boinc 187470497 Mar 10 04:47 HITS.pool.root.1
[2026-03-10 04:48:41] -rw-------. 1 boinc boinc   1013760 Mar 10 04:48 result.tar.gz
04:48:42 (520075): run_atlas exited; CPU time 18862.336378
04:48:42 (520075): called boinc_finish(0)

</stderr_txt>
]]>

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