Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
02:25:58 (1528503): wrapper (7.7.26015): starting
02:25:58 (1528503): wrapper: running run_atlas (--nthreads 4)
[2026-03-10 02:25:58] Arguments: --nthreads 4
[2026-03-10 02:25:58] Threads: 4
[2026-03-10 02:25:58] Checking for CVMFS
[2026-03-10 02:25:58] No cvmfs_config command found, will try listing directly
[2026-03-10 02:25:58] CVMFS is ok
[2026-03-10 02:25:58] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-10 02:25:58] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-10 02:25:58] Further information can be found at the LHC@home message board.
[2026-03-10 02:25:58] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-10 02:25:58] Checking for apptainer binary...
[2026-03-10 02:25:58] which: no apptainer in ((null))
[2026-03-10 02:25:58] apptainer is not installed, using version from CVMFS
[2026-03-10 02:25:58] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-10 02:25:58] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot40/slots/8/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut25.grid.cesnet.cz
[2026-03-10 02:25:58] apptainer works
[2026-03-10 02:25:58] Set ATHENA_PROC_NUMBER=4
[2026-03-10 02:25:58] Set ATHENA_CORE_NUMBER=4
[2026-03-10 02:25:58] Starting ATLAS job with PandaID=7041001624
[2026-03-10 02:25:58] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot40/slots/8 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-10 03:38:23]  *** The last 200 lines of the pilot log: ***
[2026-03-10 03:38:23]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-03-10 03:38:23]  replicas=None
[2026-03-10 03:38:23]  scope=mc23_13p6TeV
[2026-03-10 03:38:23]  status=None
[2026-03-10 03:38:23]  status_code=0
[2026-03-10 03:38:23]  storage_token=
[2026-03-10 03:38:23]  surl=/var/lib/boinc/var/slot40/slots/8/PanDA_Pilot-7041001624/log.48955010._019398.job.log.tgz.1
[2026-03-10 03:38:23]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/2e/30/log.48955010._019398.job.log.tgz.1
[2026-03-10 03:38:23]  workdir=None
[2026-03-10 03:38:23] ]
[2026-03-10 03:38:23] 2026-03-10 02:37:14,350 | INFO     | transferring file log.48955010._019398.job.log.tgz.1 from /var/lib/boinc/var/slot40/slots/8/PanDA_Pilot-7041001624/log.48955010._019398.job.log.tgz.1 to /var/lib/b
[2026-03-10 03:38:23] 2026-03-10 02:37:14,350 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/var/slot40/slots/8/PanDA_Pilot-7041001624/log.48955010._019398.job.log.tgz.1 /var/lib/boinc/var/slot40/slots/8/lo
[2026-03-10 03:38:23] 2026-03-10 02:37:14,364 | INFO     | adding to output.list: log.48955010._019398.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/2e/30/log.48955010._019398.job.log.tg
[2026-03-10 03:38:23] 2026-03-10 02:37:14,364 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-10 03:38:23] 2026-03-10 02:37:14,364 | INFO     | summary of transferred files:
[2026-03-10 03:38:23] 2026-03-10 02:37:14,364 | INFO     |  -- lfn=log.48955010._019398.job.log.tgz.1, status_code=0, status=transferred
[2026-03-10 03:38:23] 2026-03-10 02:37:14,364 | INFO     | stage-out finished correctly
[2026-03-10 03:38:23] 2026-03-10 02:37:14,656 | INFO     | time since job start (4264s) is within the limit (349056.0s)
[2026-03-10 03:38:23] 2026-03-10 02:37:14,819 | WARNING  | process 1545147 can no longer be monitored (due to stat problems) - aborting
[2026-03-10 03:38:23] 2026-03-10 02:37:14,819 | INFO     | using path: /var/lib/boinc/var/slot40/slots/8/PanDA_Pilot-7041001624/memory_monitor_summary.json (trf name=prmon)
[2026-03-10 03:38:23] 2026-03-10 02:37:15,213 | INFO     | number of running child processes to parent process 1545147: 1
[2026-03-10 03:38:23] 2026-03-10 02:37:15,213 | INFO     | maximum number of monitored processes: 6
[2026-03-10 03:38:23] 2026-03-10 02:37:16,144 | INFO     | PID=1533050 has CPU usage=11.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-03-10 03:38:23] 2026-03-10 02:37:16,144 | INFO     | .. there are 59 such processes running
[2026-03-10 03:38:23] 2026-03-10 02:37:17,144 | INFO     | time since job start (4267s) is within the limit (349056.0s)
[2026-03-10 03:38:23] 2026-03-10 02:37:17,244 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-10 03:38:23] 2026-03-10 02:37:17,716 | INFO     | monitor loop #313: job 0:7041001624 is in state 'finished'
[2026-03-10 03:38:23] 2026-03-10 02:37:17,716 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-03-10 03:38:23] 2026-03-10 02:37:18,932 | INFO     | job 7041001624 has state=finished
[2026-03-10 03:38:23] 2026-03-10 02:37:18,932 | INFO     | preparing for final server update for job 7041001624 in state='finished'
[2026-03-10 03:38:23] 2026-03-10 02:37:18,933 | INFO     | reading metadata from: /var/lib/boinc/var/slot40/slots/8/PanDA_Pilot-7041001624/jobReport.json
[2026-03-10 03:38:23] 2026-03-10 02:37:18,934 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot40/slots/8/workernode_map.json
[2026-03-10 03:38:23] 2026-03-10 02:37:18,934 | INFO     | this job has now completed (state=finished)
[2026-03-10 03:38:23] 2026-03-10 02:37:18,934 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-10 03:38:23] 2026-03-10 02:37:18,934 | INFO     | log transfer has been attempted: DONE
[2026-03-10 03:38:23] 2026-03-10 02:37:18,934 | INFO     | job 7041001624 has finished - writing final server update
[2026-03-10 03:38:23] 2026-03-10 02:37:18,934 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_1384816/.job.ad'
[2026-03-10 03:38:23] 2026-03-10 02:37:18,935 | INFO     | total number of processed events: 400 (read)
[2026-03-10 03:38:23] 2026-03-10 02:37:18,952 | INFO     | using path: /var/lib/boinc/var/slot40/slots/8/PanDA_Pilot-7041001624/memory_monitor_summary.json (trf name=prmon)
[2026-03-10 03:38:23] 2026-03-10 02:37:18,952 | INFO     | extracted standard info from prmon json
[2026-03-10 03:38:23] 2026-03-10 02:37:18,952 | INFO     | extracted standard memory fields from prmon json
[2026-03-10 03:38:23] 2026-03-10 02:37:18,952 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-10 03:38:23] 2026-03-10 02:37:18,953 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-10 03:38:23] 2026-03-10 02:37:18,953 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-10 03:38:23] 2026-03-10 02:37:18,954 | INFO     | fitting pss+swap vs Time
[2026-03-10 03:38:23] 2026-03-10 02:37:18,954 | INFO     | sum of square deviations: 77515872.0
[2026-03-10 03:38:23] 2026-03-10 02:37:18,954 | INFO     | sum of deviations: -93523980.00000001
[2026-03-10 03:38:23] 2026-03-10 02:37:18,954 | INFO     | mean x: 1773108186.0
[2026-03-10 03:38:23] 2026-03-10 02:37:18,954 | INFO     | mean y: 2334133.4285714286
[2026-03-10 03:38:23] 2026-03-10 02:37:18,954 | INFO     | intersect: 2141613873.7803319
[2026-03-10 03:38:23] 2026-03-10 02:37:18,954 | INFO     | chi2: 0.00010298065888510435
[2026-03-10 03:38:23] 2026-03-10 02:37:18,954 | INFO     | current memory leak: -1.21 B/s (using 63 data points, chi2=0.00)
[2026-03-10 03:38:23] 2026-03-10 02:37:18,954 | INFO     | could have reported an average CPU frequency of 3616 MHz (6 samples)
[2026-03-10 03:38:23] 2026-03-10 02:37:18,954 | INFO     | ..............................
[2026-03-10 03:38:23] 2026-03-10 02:37:18,954 | INFO     | . Timing measurements:
[2026-03-10 03:38:23] 2026-03-10 02:37:18,954 | INFO     | . get job = 0 s
[2026-03-10 03:38:23] 2026-03-10 02:37:18,954 | INFO     | . initial setup = 4 s
[2026-03-10 03:38:23] 2026-03-10 02:37:18,955 | INFO     | . payload setup = 5 s
[2026-03-10 03:38:23] 2026-03-10 02:37:18,955 | INFO     | . stage-in = 0 s
[2026-03-10 03:38:23] 2026-03-10 02:37:18,955 | INFO     | . payload execution = 4244 s
[2026-03-10 03:38:23] 2026-03-10 02:37:18,955 | INFO     | . stage-out = 0 s
[2026-03-10 03:38:23] 2026-03-10 02:37:18,955 | INFO     | . log creation = 0 s
[2026-03-10 03:38:23] 2026-03-10 02:37:18,955 | INFO     | ..............................
[2026-03-10 03:38:23] 2026-03-10 02:37:19,149 | INFO     | time since job start (4269s) is within the limit (349056.0s)
[2026-03-10 03:38:23] 2026-03-10 02:37:19,424 | INFO     | 
[2026-03-10 03:38:23] 2026-03-10 02:37:19,424 | INFO     | job summary report
[2026-03-10 03:38:23] 2026-03-10 02:37:19,424 | INFO     | --------------------------------------------------
[2026-03-10 03:38:23] 2026-03-10 02:37:19,424 | INFO     | PanDA job id: 7041001624
[2026-03-10 03:38:23] 2026-03-10 02:37:19,424 | INFO     | task id: 48955010
[2026-03-10 03:38:23] 2026-03-10 02:37:19,424 | INFO     | errors: (none)
[2026-03-10 03:38:23] 2026-03-10 02:37:19,424 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-10 03:38:23] 2026-03-10 02:37:19,424 | INFO     | pilot state: finished 
[2026-03-10 03:38:23] 2026-03-10 02:37:19,424 | INFO     | transexitcode: 0
[2026-03-10 03:38:23] 2026-03-10 02:37:19,424 | INFO     | exeerrorcode: 0
[2026-03-10 03:38:23] 2026-03-10 02:37:19,424 | INFO     | exeerrordiag: 
[2026-03-10 03:38:23] 2026-03-10 02:37:19,425 | INFO     | exitcode: 0
[2026-03-10 03:38:23] 2026-03-10 02:37:19,425 | INFO     | exitmsg: OK
[2026-03-10 03:38:23] 2026-03-10 02:37:19,425 | INFO     | cpuconsumptiontime: 16111 s
[2026-03-10 03:38:23] 2026-03-10 02:37:19,425 | INFO     | nevents: 400
[2026-03-10 03:38:23] 2026-03-10 02:37:19,425 | INFO     | neventsw: 0
[2026-03-10 03:38:23] 2026-03-10 02:37:19,425 | INFO     | pid: 1545147
[2026-03-10 03:38:23] 2026-03-10 02:37:19,425 | INFO     | pgrp: 1545147
[2026-03-10 03:38:23] 2026-03-10 02:37:19,425 | INFO     | corecount: 4
[2026-03-10 03:38:23] 2026-03-10 02:37:19,425 | INFO     | event service: False
[2026-03-10 03:38:23] 2026-03-10 02:37:19,425 | INFO     | sizes: {0: 2280190, 11: 2280190, 4253: 2315231, 4256: 2315231, 4258: 2315425}
[2026-03-10 03:38:23] 2026-03-10 02:37:19,425 | INFO     | --------------------------------------------------
[2026-03-10 03:38:23] 2026-03-10 02:37:19,425 | INFO     | 
[2026-03-10 03:38:23] 2026-03-10 02:37:19,425 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot40/slots/8
[2026-03-10 03:38:23] 2026-03-10 02:37:19,444 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-10 03:38:23] 2026-03-10 02:37:19,444 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-10 03:38:23] 2026-03-10 02:37:19,444 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-10 03:38:23] 2026-03-10 02:37:19,444 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-10 03:38:23] 2026-03-10 02:37:19,444 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-10 03:38:23] 2026-03-10 02:37:19,444 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-10 03:38:23] 2026-03-10 02:37:19,444 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-10 03:38:23] 2026-03-10 02:37:19,444 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-10 03:38:23] 2026-03-10 02:37:19,445 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-10 03:38:23] 2026-03-10 02:37:19,445 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-10 03:38:23] 2026-03-10 02:37:19,445 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-10 03:38:23] 2026-03-10 02:37:19,445 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-10 03:38:23] 2026-03-10 02:37:19,445 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-10 03:38:23] 2026-03-10 02:37:19,445 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-10 03:38:23] 2026-03-10 02:37:19,445 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-10 03:38:23] 2026-03-10 02:37:19,445 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-10 03:38:23] 2026-03-10 02:37:19,445 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-10 03:38:23] 2026-03-10 02:37:19,445 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-10 03:38:23] 2026-03-10 02:37:19,445 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-10 03:38:23] 2026-03-10 02:37:19,445 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-10 03:38:23] 2026-03-10 02:37:19,445 | INFO     | job 7041001624 has completed (purged errors)
[2026-03-10 03:38:23] 2026-03-10 02:37:19,445 | INFO     | overall cleanup function is called
[2026-03-10 03:38:23] 2026-03-10 02:37:20,452 | INFO     | --- collectZombieJob: --- 10, [1545147]
[2026-03-10 03:38:23] 2026-03-10 02:37:20,452 | INFO     | zombie collector waiting for pid 1545147
[2026-03-10 03:38:23] 2026-03-10 02:37:20,452 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-10 03:38:23] 2026-03-10 02:37:20,452 | INFO     | collected zombie processes
[2026-03-10 03:38:23] 2026-03-10 02:37:20,452 | INFO     | will attempt to kill all subprocesses of pid=1545147
[2026-03-10 03:38:23] 2026-03-10 02:37:20,871 | INFO     | process IDs to be killed: [1545147] (in reverse order)
[2026-03-10 03:38:23] 2026-03-10 02:37:21,084 | WARNING  | found no corresponding commands to process id(s)
[2026-03-10 03:38:23] 2026-03-10 02:37:21,084 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-10 03:38:23] 2026-03-10 02:37:21,110 | INFO     | did not find any defunct processes belonging to 1545147
[2026-03-10 03:38:23] 2026-03-10 02:37:21,135 | INFO     | did not find any defunct processes belonging to 1545147
[2026-03-10 03:38:23] 2026-03-10 02:37:21,135 | INFO     | ready for new job
[2026-03-10 03:38:23] 2026-03-10 02:37:21,135 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-10 03:38:23] 2026-03-10 02:37:21,136 | INFO     | **************************************
[2026-03-10 03:38:23] 2026-03-10 02:37:21,137 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-10 03:38:23] 2026-03-10 02:37:21,137 | INFO     | **************************************
[2026-03-10 03:38:23] 2026-03-10 02:37:21,137 | INFO     | 
[2026-03-10 03:38:23] 2026-03-10 02:37:21,143 | INFO     | architecture information:
[2026-03-10 03:38:23] 2026-03-10 02:37:21,143 | INFO     | executing command: cat /etc/os-release
[2026-03-10 03:38:23] 2026-03-10 02:37:21,158 | INFO     | cat /etc/os-release:
[2026-03-10 03:38:23] NAME="CentOS Linux"
[2026-03-10 03:38:23] VERSION="7 (Core)"
[2026-03-10 03:38:23] ID="centos"
[2026-03-10 03:38:23] ID_LIKE="rhel fedora"
[2026-03-10 03:38:23] VERSION_ID="7"
[2026-03-10 03:38:23] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-10 03:38:23] ANSI_COLOR="0;31"
[2026-03-10 03:38:23] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-10 03:38:23] HOME_URL="https://www.centos.org/"
[2026-03-10 03:38:23] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-10 03:38:23] 
[2026-03-10 03:38:23] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-10 03:38:23] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-10 03:38:23] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-10 03:38:23] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-10 03:38:23] 
[2026-03-10 03:38:23] 2026-03-10 02:37:21,158 | INFO     | **************************************
[2026-03-10 03:38:23] 2026-03-10 02:37:21,661 | INFO     | executing command: df -mP /var/lib/boinc/var/slot40/slots/8
[2026-03-10 03:38:23] 2026-03-10 02:37:21,676 | INFO     | sufficient remaining disk space (20343422976 B)
[2026-03-10 03:38:23] 2026-03-10 02:37:21,676 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-10 03:38:23] 2026-03-10 02:37:21,676 | INFO     | current server update state: UPDATING_FINAL
[2026-03-10 03:38:23] 2026-03-10 02:37:21,676 | INFO     | update_server=False
[2026-03-10 03:38:23] 2026-03-10 02:37:21,677 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-10 03:38:23] 2026-03-10 02:37:21,677 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-10 03:38:23] 2026-03-10 02:37:21,677 | INFO     | aborting loop
[2026-03-10 03:38:23] 2026-03-10 02:37:21,818 | INFO     | all payload control threads have been joined
[2026-03-10 03:38:23] 2026-03-10 02:37:22,118 | INFO     | all data control threads have been joined
[2026-03-10 03:38:23] 2026-03-10 02:37:22,181 | INFO     | all job control threads have been joined
[2026-03-10 03:38:23] 2026-03-10 02:37:22,422 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-10 03:38:23] 2026-03-10 02:37:22,681 | INFO     | [job] retrieve thread has finished
[2026-03-10 03:38:23] 2026-03-10 02:37:22,681 | INFO     | [job] job monitor thread has finished
[2026-03-10 03:38:23] 2026-03-10 02:37:22,824 | INFO     | [payload] control thread has finished
[2026-03-10 03:38:23] 2026-03-10 02:37:22,943 | INFO     | [payload] validate_post thread has finished
[2026-03-10 03:38:23] 2026-03-10 02:37:23,123 | INFO     | [data] control thread has finished
[2026-03-10 03:38:23] 2026-03-10 02:37:23,186 | INFO     | [job] control thread has finished
[2026-03-10 03:38:23] 2026-03-10 02:37:23,294 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-10 03:38:23] 2026-03-10 02:37:23,442 | INFO     | [job] validate thread has finished
[2026-03-10 03:38:23] 2026-03-10 02:37:23,546 | INFO     | [job] create_data_payload thread has finished
[2026-03-10 03:38:23] 2026-03-10 02:37:23,802 | INFO     | [payload] validate_pre thread has finished
[2026-03-10 03:38:23] 2026-03-10 02:37:23,895 | INFO     | [payload] execute_payloads thread has finished
[2026-03-10 03:38:23] 2026-03-10 02:37:23,936 | INFO     | [payload] failed_post thread has finished
[2026-03-10 03:38:23] 2026-03-10 02:37:24,009 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-10 03:38:23] 2026-03-10 02:37:24,079 | INFO     | [data] copytool_in thread has finished
[2026-03-10 03:38:23] 2026-03-10 02:37:24,428 | INFO     | [data] copytool_out thread has finished
[2026-03-10 03:38:23] 2026-03-10 02:37:25,014 | INFO     | [job] queue monitor thread has finished
[2026-03-10 03:38:23] 2026-03-10 02:37:27,300 | INFO     | [data] queue_monitor thread has finished
[2026-03-10 03:38:23] 2026-03-10 02:37:32,243 | INFO     | job.realtimelogging is not enabled
[2026-03-10 03:38:23] 2026-03-10 02:37:33,248 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-10 03:38:23] 2026-03-10 02:37:52,684 | INFO     | PID=1533050 has CPU usage=3.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-10 03:38:23] 2026-03-10 02:37:52,684 | INFO     | .. there are 59 such processes running
[2026-03-10 03:38:23] 2026-03-10 02:37:52,685 | INFO     | found 0 job(s) in 20 queues
[2026-03-10 03:38:23] 2026-03-10 02:37:52,685 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-10 03:38:23] 2026-03-10 02:37:52,685 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-10 03:38:23] 2026-03-10 02:38:16,443 | INFO     | [monitor] cgroup control has ended
[2026-03-10 03:38:23] 2026-03-10 02:38:17,769 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23179034806080)>', '<ExcThread(monitor, started 23178726332160)>']
[2026-03-10 03:38:23] 2026-03-10 02:38:17,797 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-10 03:38:23] 2026-03-10 02:38:17,797 | INFO     | [monitor] control thread has ended
[2026-03-10 03:38:23] 2026-03-10 02:38:22,793 | INFO     | all workflow threads have been joined
[2026-03-10 03:38:23] 2026-03-10 02:38:22,794 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-10 03:38:23] 2026-03-10 02:38:22,794 | INFO     | traces error code: 0
[2026-03-10 03:38:23] 2026-03-10 02:38:22,794 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-10 03:38:23] 2026-03-10 02:38:22,913 [wrapper] ==== pilot stdout END ====
[2026-03-10 03:38:23] 2026-03-10 02:38:22,916 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-10 03:38:23] 2026-03-10 02:38:22,918 [wrapper] pilotpid: 1533050
[2026-03-10 03:38:23] 2026-03-10 02:38:22,920 [wrapper] Pilot exit status: 0
[2026-03-10 03:38:23] 2026-03-10 02:38:22,930 [wrapper] pandaids: 7041001624
[2026-03-10 03:38:23] 2026-03-10 02:38:23,036 [wrapper] cleanup supervisor_pilot 2264017 1533051
[2026-03-10 03:38:23] 2026-03-10 02:38:23,038 [wrapper] Test setup, not cleaning
[2026-03-10 03:38:23] 2026-03-10 02:38:23,040 [wrapper] apfmon messages muted
[2026-03-10 03:38:23] 2026-03-10 02:38:23,042 [wrapper] ==== wrapper stdout END ====
[2026-03-10 03:38:23] 2026-03-10 02:38:23,045 [wrapper] ==== wrapper stderr END ====
[2026-03-10 03:38:23]  *** Error codes and diagnostics ***
[2026-03-10 03:38:23]     "exeErrorCode": 0,
[2026-03-10 03:38:23]     "exeErrorDiag": "",
[2026-03-10 03:38:23]     "pilotErrorCode": 0,
[2026-03-10 03:38:23]     "pilotErrorDiag": "",
[2026-03-10 03:38:23]  *** Listing of results directory ***
[2026-03-10 03:38:23] total 605552
[2026-03-10 03:38:23] -rw-r--r--. 1 boinc boinc    602657 Feb  3 12:11 pilot3.tar.gz
[2026-03-10 03:38:23] -rw-r--r--. 1 boinc boinc      5111 Mar  9 18:45 queuedata.json
[2026-03-10 03:38:23] -rwx------. 1 boinc boinc     36322 Mar  9 18:45 runpilot2-wrapper.sh
[2026-03-10 03:38:23] -rw-r--r--. 1 boinc boinc       100 Mar 10 02:25 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-10 03:38:23] -rwxr-xr-x. 1 boinc boinc      7986 Mar 10 02:25 run_atlas
[2026-03-10 03:38:23] -rw-r--r--. 1 boinc boinc       105 Mar 10 02:25 job.xml
[2026-03-10 03:38:23] -rw-r--r--. 1 boinc boinc      6705 Mar 10 02:25 init_data.xml
[2026-03-10 03:38:23] -rw-r--r--. 2 boinc boinc 437194299 Mar 10 02:25 EVNT.46701403._001387.pool.root.1
[2026-03-10 03:38:23] -rw-r--r--. 2 boinc boinc     15845 Mar 10 02:25 start_atlas.sh
[2026-03-10 03:38:23] drwxrwx--x. 2 boinc boinc      4096 Mar 10 02:25 shared
[2026-03-10 03:38:23] -rw-r--r--. 2 boinc boinc    616309 Mar 10 02:25 input.tar.gz
[2026-03-10 03:38:23] -rw-r--r--. 1 boinc boinc         0 Mar 10 02:25 boinc_lockfile
[2026-03-10 03:38:23] -rw-r--r--. 1 boinc boinc      2563 Mar 10 02:25 pandaJob.out
[2026-03-10 03:38:23] -rw-------. 1 boinc boinc   1002338 Mar 10 02:26 agis_schedconf.cvmfs.json
[2026-03-10 03:38:23] -rw-------. 1 boinc boinc   1511578 Mar 10 02:26 agis_ddmendpoints.agis.ALL.json
[2026-03-10 03:38:23] -rw-------. 1 boinc boinc       444 Mar 10 02:26 workernode_map.json
[2026-03-10 03:38:23] drwx------. 7 boinc boinc      4096 Mar 10 02:26 pilot3
[2026-03-10 03:38:23] -rw-------. 1 boinc boinc 177049478 Mar 10 03:36 HITS.48955010._019398.pool.root.1
[2026-03-10 03:38:23] -rw-------. 1 boinc boinc      1030 Mar 10 03:37 memory_monitor_summary.json
[2026-03-10 03:38:23] -rw-r--r--. 1 boinc boinc       530 Mar 10 03:37 boinc_task_state.xml
[2026-03-10 03:38:23] -rw-------. 1 boinc boinc    294201 Mar 10 03:37 log.48955010._019398.job.log.tgz.1
[2026-03-10 03:38:23] -rw-------. 1 boinc boinc      6354 Mar 10 03:37 heartbeat.json
[2026-03-10 03:38:23] -rw-------. 1 boinc boinc        95 Mar 10 03:37 pilot_heartbeat.json
[2026-03-10 03:38:23] -rw-r--r--. 1 boinc boinc      8192 Mar 10 03:38 boinc_mmap_file
[2026-03-10 03:38:23] -rw-r--r--. 1 boinc boinc        27 Mar 10 03:38 wrapper_checkpoint.txt
[2026-03-10 03:38:23] -rw-------. 1 boinc boinc      4901 Mar 10 03:38 pilotlog.txt
[2026-03-10 03:38:23] -rw-------. 1 boinc boinc    639999 Mar 10 03:38 log.48955010._019398.job.log.1
[2026-03-10 03:38:23] -rw-------. 1 boinc boinc       357 Mar 10 03:38 output.list
[2026-03-10 03:38:23] -rw-r--r--. 1 boinc boinc       620 Mar 10 03:38 runtime_log
[2026-03-10 03:38:23] -rw-------. 1 boinc boinc    952320 Mar 10 03:38 result.tar.gz
[2026-03-10 03:38:23] -rw-------. 1 boinc boinc       662 Mar 10 03:38 v7OMDm1qtJ9n9Rq4apOajLDm4fhM0noT9bVooX4SDm1daLDmlY8i2m.diag
[2026-03-10 03:38:23] -rw-r--r--. 1 boinc boinc      9204 Mar 10 03:38 runtime_log.err
[2026-03-10 03:38:23] -rw-r--r--. 1 boinc boinc     21839 Mar 10 03:38 stderr.txt
[2026-03-10 03:38:23] HITS file was successfully produced:
[2026-03-10 03:38:23] -rw-------. 1 boinc boinc 177049478 Mar 10 03:36 shared/HITS.pool.root.1
[2026-03-10 03:38:23]  *** Contents of shared directory: ***
[2026-03-10 03:38:23] total 601408
[2026-03-10 03:38:23] -rw-r--r--. 2 boinc boinc 437194299 Mar 10 02:25 ATLAS.root_0
[2026-03-10 03:38:23] -rw-r--r--. 2 boinc boinc     15845 Mar 10 02:25 start_atlas.sh
[2026-03-10 03:38:23] -rw-r--r--. 2 boinc boinc    616309 Mar 10 02:25 input.tar.gz
[2026-03-10 03:38:23] -rw-------. 1 boinc boinc 177049478 Mar 10 03:36 HITS.pool.root.1
[2026-03-10 03:38:23] -rw-------. 1 boinc boinc    952320 Mar 10 03:38 result.tar.gz
03:38:24 (1528503): run_atlas exited; CPU time 16272.098683
03:38:24 (1528503): called boinc_finish(0)

</stderr_txt>
]]>

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