Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
07:20:14 (2380566): wrapper (7.7.26015): starting
07:20:14 (2380566): wrapper: running run_atlas (--nthreads 3)
[2026-03-10 07:20:14] Arguments: --nthreads 3
[2026-03-10 07:20:14] Threads: 3
[2026-03-10 07:20:14] Checking for CVMFS
[2026-03-10 07:20:14] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-10 07:20:15] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-10 07:20:15] Running cvmfs_config stat atlas.cern.ch
[2026-03-10 07:20:15] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-10 07:20:15] 2.9.2.0 2903 16646 85872 157105 2 50 29019441 36864000 0 130560 0 6673861 99.981 758751 6153 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-10 07:20:15] CVMFS is ok
[2026-03-10 07:20:15] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-10 07:20:15] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-10 07:20:15] Further information can be found at the LHC@home message board.
[2026-03-10 07:20:15] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-10 07:20:15] Checking for apptainer binary...
[2026-03-10 07:20:15] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-10 07:20:15] Running /usr/bin/apptainer --version
[2026-03-10 07:20:15] apptainer version 1.4.1-1.1
[2026-03-10 07:20:15] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-10 07:20:15] belleA253
[2026-03-10 07:20:15] apptainer works
[2026-03-10 07:20:15] Set ATHENA_PROC_NUMBER=3
[2026-03-10 07:20:15] Set ATHENA_CORE_NUMBER=3
[2026-03-10 07:20:15] Starting ATLAS job with PandaID=7040898933
[2026-03-10 07:20:15] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-10 08:37:37]  *** The last 200 lines of the pilot log: ***
[2026-03-10 08:37:37] 2026-03-10 07:37:05,945 | INFO     | job 7040898933 has completed (purged errors)
[2026-03-10 08:37:37] 2026-03-10 07:37:05,945 | INFO     | overall cleanup function is called
[2026-03-10 08:37:37] 2026-03-10 07:37:06,949 | INFO     | --- collectZombieJob: --- 10, [2389056]
[2026-03-10 08:37:37] 2026-03-10 07:37:06,949 | INFO     | zombie collector waiting for pid 2389056
[2026-03-10 08:37:37] 2026-03-10 07:37:06,950 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-10 08:37:37] 2026-03-10 07:37:06,950 | INFO     | collected zombie processes
[2026-03-10 08:37:37] 2026-03-10 07:37:06,950 | INFO     | will attempt to kill all subprocesses of pid=2389056
[2026-03-10 08:37:37] 2026-03-10 07:37:06,990 | INFO     | process IDs to be killed: [2389056] (in reverse order)
[2026-03-10 08:37:37] 2026-03-10 07:37:07,015 | WARNING  | found no corresponding commands to process id(s)
[2026-03-10 08:37:37] 2026-03-10 07:37:07,016 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-10 08:37:37] 2026-03-10 07:37:07,017 | INFO     | did not find any defunct processes belonging to 2389056
[2026-03-10 08:37:37] 2026-03-10 07:37:07,018 | INFO     | did not find any defunct processes belonging to 2389056
[2026-03-10 08:37:37] 2026-03-10 07:37:07,018 | INFO     | ready for new job
[2026-03-10 08:37:37] 2026-03-10 07:37:07,018 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-10 08:37:37] 2026-03-10 07:37:07,018 | INFO     | **************************************
[2026-03-10 08:37:37] 2026-03-10 07:37:07,019 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-10 08:37:37] 2026-03-10 07:37:07,019 | INFO     | **************************************
[2026-03-10 08:37:37] 2026-03-10 07:37:07,019 | INFO     | 
[2026-03-10 08:37:37] 2026-03-10 07:37:07,019 | INFO     | architecture information:
[2026-03-10 08:37:37] 2026-03-10 07:37:07,019 | INFO     | executing command: cat /etc/os-release
[2026-03-10 08:37:37] 2026-03-10 07:37:07,028 | INFO     | cat /etc/os-release:
[2026-03-10 08:37:37] NAME="CentOS Linux"
[2026-03-10 08:37:37] VERSION="7 (Core)"
[2026-03-10 08:37:37] ID="centos"
[2026-03-10 08:37:37] ID_LIKE="rhel fedora"
[2026-03-10 08:37:37] VERSION_ID="7"
[2026-03-10 08:37:37] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-10 08:37:37] ANSI_COLOR="0;31"
[2026-03-10 08:37:37] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-10 08:37:37] HOME_URL="https://www.centos.org/"
[2026-03-10 08:37:37] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-10 08:37:37] 
[2026-03-10 08:37:37] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-10 08:37:37] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-10 08:37:37] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-10 08:37:37] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-10 08:37:37] 
[2026-03-10 08:37:37] 2026-03-10 07:37:07,028 | INFO     | **************************************
[2026-03-10 08:37:37] 2026-03-10 07:37:07,532 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-10 08:37:37] 2026-03-10 07:37:07,545 | INFO     | sufficient remaining disk space (374204268544 B)
[2026-03-10 08:37:37] 2026-03-10 07:37:07,545 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-10 08:37:37] 2026-03-10 07:37:07,546 | INFO     | current server update state: UPDATING_FINAL
[2026-03-10 08:37:37] 2026-03-10 07:37:07,546 | INFO     | update_server=False
[2026-03-10 08:37:37] 2026-03-10 07:37:07,546 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-10 08:37:37] 2026-03-10 07:37:07,546 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-10 08:37:37] 2026-03-10 07:37:07,546 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-10 08:37:37] 2026-03-10 07:37:07,546 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-10 08:37:37] 2026-03-10 07:37:08,309 | INFO     | all payload control threads have been joined
[2026-03-10 08:37:37] 2026-03-10 07:37:08,442 | INFO     | all data control threads have been joined
[2026-03-10 08:37:37] 2026-03-10 07:37:08,551 | INFO     | [job] retrieve thread has finished
[2026-03-10 08:37:37] 2026-03-10 07:37:08,552 | INFO     | [job] queue monitor thread has finished
[2026-03-10 08:37:37] 2026-03-10 07:37:08,618 | INFO     | all job control threads have been joined
[2026-03-10 08:37:37] 2026-03-10 07:37:08,750 | INFO     | [payload] failed_post thread has finished
[2026-03-10 08:37:37] 2026-03-10 07:37:08,750 | INFO     | job.realtimelogging is not enabled
[2026-03-10 08:37:37] 2026-03-10 07:37:08,787 | WARNING  | process 2389056 can no longer be monitored (due to stat problems) - aborting
[2026-03-10 08:37:37] 2026-03-10 07:37:08,815 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-03-10 08:37:37] 2026-03-10 07:37:08,850 | INFO     | number of running child processes to parent process 2389056: 1
[2026-03-10 08:37:37] 2026-03-10 07:37:08,850 | INFO     | maximum number of monitored processes: 6
[2026-03-10 08:37:37] 2026-03-10 07:37:08,850 | INFO     | aborting job monitoring since job object (job id=7040898933) has expired
[2026-03-10 08:37:37] 2026-03-10 07:37:08,850 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-10 08:37:37] 2026-03-10 07:37:08,850 | INFO     | will abort loop
[2026-03-10 08:37:37] 2026-03-10 07:37:09,027 | INFO     | [payload] execute_payloads thread has finished
[2026-03-10 08:37:37] 2026-03-10 07:37:09,214 | INFO     | [job] validate thread has finished
[2026-03-10 08:37:37] 2026-03-10 07:37:09,296 | INFO     | [job] create_data_payload thread has finished
[2026-03-10 08:37:37] 2026-03-10 07:37:09,315 | INFO     | [payload] control thread has finished
[2026-03-10 08:37:37] 2026-03-10 07:37:09,356 | INFO     | [payload] validate_post thread has finished
[2026-03-10 08:37:37] 2026-03-10 07:37:09,385 | INFO     | [payload] validate_pre thread has finished
[2026-03-10 08:37:37] 2026-03-10 07:37:09,447 | INFO     | [data] control thread has finished
[2026-03-10 08:37:37] 2026-03-10 07:37:09,458 | INFO     | [data] copytool_in thread has finished
[2026-03-10 08:37:37] 2026-03-10 07:37:09,552 | INFO     | [data] copytool_out thread has finished
[2026-03-10 08:37:37] 2026-03-10 07:37:09,624 | INFO     | [job] control thread has finished
[2026-03-10 08:37:37] 2026-03-10 07:37:09,756 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-10 08:37:37] 2026-03-10 07:37:09,853 | INFO     | [job] job monitor thread has finished
[2026-03-10 08:37:37] 2026-03-10 07:37:11,553 | INFO     | [data] queue_monitor thread has finished
[2026-03-10 08:37:37] 2026-03-10 07:37:32,083 | INFO     | [monitor] cgroup control has ended
[2026-03-10 08:37:37] 2026-03-10 07:37:32,544 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140522430117696)>', '<ExcThread(monitor, started 140522147821312)>']
[2026-03-10 08:37:37] 2026-03-10 07:37:37,570 | INFO     | all workflow threads have been joined
[2026-03-10 08:37:37] 2026-03-10 07:37:37,571 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-10 08:37:37] 2026-03-10 07:37:37,571 | INFO     | traces error code: 0
[2026-03-10 08:37:37] 2026-03-10 07:37:37,571 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-10 08:37:37] 2026-03-10 07:37:37,751 | INFO     | PID=2384626 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-10 08:37:37] 2026-03-10 07:37:37,751 | INFO     | found 0 job(s) in 20 queues
[2026-03-10 08:37:37] 2026-03-10 07:37:37,751 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-10 08:37:37] 2026-03-10 07:37:37,751 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-10 08:37:37] 2026-03-10 07:37:37,751 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-10 08:37:37] 2026-03-10 07:37:37,751 | INFO     | [monitor] control thread has ended
[2026-03-10 08:37:37] 2026-03-10 07:37:37,798 [wrapper] ==== pilot stdout END ====
[2026-03-10 08:37:37] 2026-03-10 07:37:37,801 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-10 08:37:37] 2026-03-10 07:37:37,803 [wrapper] pilotpid: 2384626
[2026-03-10 08:37:37] 2026-03-10 07:37:37,806 [wrapper] Pilot exit status: 0
[2026-03-10 08:37:37] 2026-03-10 07:37:37,813 [wrapper] pandaids: 7040898933
[2026-03-10 08:37:37] 2026-03-10 07:37:37,829 [wrapper] cleanup supervisor_pilot 2394277 2384627
[2026-03-10 08:37:37] 2026-03-10 07:37:37,832 [wrapper] Test setup, not cleaning
[2026-03-10 08:37:37] 2026-03-10 07:37:37,834 [wrapper] apfmon messages muted
[2026-03-10 08:37:37] 2026-03-10 07:37:37,837 [wrapper] ==== wrapper stdout END ====
[2026-03-10 08:37:37] 2026-03-10 07:37:37,839 [wrapper] ==== wrapper stderr END ====
[2026-03-10 08:37:37]  *** Error codes and diagnostics ***
[2026-03-10 08:37:37]     "exeErrorCode": 0,
[2026-03-10 08:37:37]     "exeErrorDiag": "",
[2026-03-10 08:37:37]     "pilotErrorCode": 0,
[2026-03-10 08:37:37]     "pilotErrorDiag": "",
[2026-03-10 08:37:37]  *** Listing of results directory ***
[2026-03-10 08:37:37] total 618868
[2026-03-10 08:37:37] -rw-r--r-- 1 boinc boinc      5111 Mar  9 17:24 queuedata.json
[2026-03-10 08:37:37] -rw-r--r-- 1 boinc boinc    584627 Mar  9 17:24 pilot3.tar.gz
[2026-03-10 08:37:37] -rwx------ 1 boinc boinc     36322 Mar  9 17:24 runpilot2-wrapper.sh
[2026-03-10 08:37:37] -rw-r--r-- 1 boinc boinc       100 Mar 10 07:20 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-10 08:37:37] -rwxr-xr-x 1 boinc boinc      7986 Mar 10 07:20 run_atlas
[2026-03-10 08:37:37] -rw-r--r-- 1 boinc boinc       105 Mar 10 07:20 job.xml
[2026-03-10 08:37:37] -rw-r--r-- 2 boinc boinc 438555315 Mar 10 07:20 EVNT.46701403._001385.pool.root.1
[2026-03-10 08:37:37] -rw-r--r-- 2 boinc boinc    597949 Mar 10 07:20 input.tar.gz
[2026-03-10 08:37:37] -rw-r--r-- 2 boinc boinc     15845 Mar 10 07:20 start_atlas.sh
[2026-03-10 08:37:37] drwxrwx--x 2 boinc boinc      4096 Mar 10 07:20 shared
[2026-03-10 08:37:37] -rw-r--r-- 1 boinc boinc         0 Mar 10 07:20 boinc_setup_complete
[2026-03-10 08:37:37] -rw-r--r-- 1 boinc boinc      6447 Mar 10 07:20 init_data.xml
[2026-03-10 08:37:37] -rw-r--r-- 1 boinc boinc         0 Mar 10 07:20 boinc_lockfile
[2026-03-10 08:37:37] -rw-r--r-- 1 boinc boinc      2561 Mar 10 07:20 pandaJob.out
[2026-03-10 08:37:37] -rw------- 1 boinc boinc   1005065 Mar 10 07:20 agis_schedconf.cvmfs.json
[2026-03-10 08:37:37] -rw------- 1 boinc boinc   1511578 Mar 10 07:20 agis_ddmendpoints.agis.ALL.json
[2026-03-10 08:37:37] -rw------- 1 boinc boinc       425 Mar 10 07:20 workernode_map.json
[2026-03-10 08:37:37] drwx------ 5 boinc boinc      4096 Mar 10 07:20 pilot3
[2026-03-10 08:37:37] -rw------- 1 boinc boinc        95 Mar 10 08:36 pilot_heartbeat.json
[2026-03-10 08:37:37] -rw-r--r-- 1 boinc boinc       531 Mar 10 08:36 boinc_task_state.xml
[2026-03-10 08:37:37] -rw------- 1 boinc boinc 189412471 Mar 10 08:36 HITS.48955010._019251.pool.root.1
[2026-03-10 08:37:37] -rw------- 1 boinc boinc      1017 Mar 10 08:37 memory_monitor_summary.json
[2026-03-10 08:37:37] -rw------- 1 boinc boinc    235246 Mar 10 08:37 log.48955010._019251.job.log.tgz.1
[2026-03-10 08:37:37] -rw------- 1 boinc boinc      6311 Mar 10 08:37 heartbeat.json
[2026-03-10 08:37:37] -rw-r--r-- 1 boinc boinc      8192 Mar 10 08:37 boinc_mmap_file
[2026-03-10 08:37:37] -rw-r--r-- 1 boinc boinc        27 Mar 10 08:37 wrapper_checkpoint.txt
[2026-03-10 08:37:37] -rw------- 1 boinc boinc       747 Mar 10 08:37 pilotlog.txt
[2026-03-10 08:37:37] -rw------- 1 boinc boinc    679430 Mar 10 08:37 log.48955010._019251.job.log.1
[2026-03-10 08:37:37] -rw------- 1 boinc boinc       357 Mar 10 08:37 output.list
[2026-03-10 08:37:37] -rw-r--r-- 1 boinc boinc       620 Mar 10 08:37 runtime_log
[2026-03-10 08:37:37] -rw------- 1 boinc boinc    931840 Mar 10 08:37 result.tar.gz
[2026-03-10 08:37:37] -rw-r--r-- 1 boinc boinc      8911 Mar 10 08:37 runtime_log.err
[2026-03-10 08:37:37] -rw------- 1 boinc boinc       660 Mar 10 08:37 9ErKDmhasJ9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmB0cLDmnTVlJo.diag
[2026-03-10 08:37:37] -rw-r--r-- 1 boinc boinc     11537 Mar 10 08:37 stderr.txt
[2026-03-10 08:37:37] HITS file was successfully produced:
[2026-03-10 08:37:37] -rw------- 1 boinc boinc 189412471 Mar 10 08:36 shared/HITS.pool.root.1
[2026-03-10 08:37:37]  *** Contents of shared directory: ***
[2026-03-10 08:37:37] total 614776
[2026-03-10 08:37:37] -rw-r--r-- 2 boinc boinc 438555315 Mar 10 07:20 ATLAS.root_0
[2026-03-10 08:37:37] -rw-r--r-- 2 boinc boinc    597949 Mar 10 07:20 input.tar.gz
[2026-03-10 08:37:37] -rw-r--r-- 2 boinc boinc     15845 Mar 10 07:20 start_atlas.sh
[2026-03-10 08:37:37] -rw------- 1 boinc boinc 189412471 Mar 10 08:36 HITS.pool.root.1
[2026-03-10 08:37:37] -rw------- 1 boinc boinc    931840 Mar 10 08:37 result.tar.gz
08:37:39 (2380566): run_atlas exited; CPU time 13143.508355
08:37:39 (2380566): called boinc_finish(0)

</stderr_txt>
]]>

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